Ggra5115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5115.t1
Unique NameGgra5115.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:502462..503160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABP00151
PFAMsTim17
Max annot lvl3041|Chlorophyta
Evalue2.95e-13
EggNOG OGsKOG4608@1|root,KOG4608@2759|Eukaryota,37ME7@33090|Viridiplantae,34NQF@3041|Chlorophyta
DescriptionMitochondrial import inner membrane translocase subunit Tim17 Tim22 Tim23 family protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5115Ggra5115Gracilaria gracilis GNS1m malegenetig00000069_pilon 502462..503160 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5115.t1.stop1Ggra5115.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 502462..502464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5115.t1.CDS1Ggra5115.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 502462..503160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5115.t1.exon1Ggra5115.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 502462..503160 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5115.t1.start1Ggra5115.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 503158..503160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5115.t1Ggra5115.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 502462..503160 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5115.t1 ID=Ggra5115.t1|Name=Ggra5115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MSSDRENVDISKNGPVKGHSEKVKSIRDAFRRLEPGETPPKAPESLRTWC
AQTTYGVIGGMLFGGYRGLQQARNKNIPSPVPTTSAQHRVAVFFVRDGIL
TGSRIGVFVSLFSATALLVGNSGLTKRVDHPANYAAAGAFTCGLFAAAVG
GWVPAGPAAAFGAAISGAAATAQQSLEQLVAQSNGRLDIVQAQEPEASVG
RVIRTLEENLASHPLRAASREDPVGSPDGPQT*
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spliced messenger RNA

>Ggra5115.t1 ID=Ggra5115.t1|Name=Ggra5115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000069_pilon:502462..503160- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCAGACAGGGAAAATGTCGATATCTCCAAGAACGGGCCAGTTAA
AGGACATTCAGAAAAAGTGAAATCTATTAGAGATGCATTCCGACGTCTAG
AGCCCGGAGAAACACCTCCAAAGGCCCCGGAGTCTTTACGTACCTGGTGC
GCTCAGACGACGTATGGCGTTATTGGTGGCATGTTGTTTGGTGGCTATCG
CGGATTGCAACAAGCGCGAAACAAGAACATCCCGAGCCCTGTACCAACTA
CCTCCGCGCAGCACCGTGTCGCTGTGTTCTTTGTTCGCGACGGTATTCTA
ACAGGTTCTCGTATCGGTGTTTTTGTGTCACTGTTTTCTGCCACAGCTCT
TCTAGTCGGAAATTCAGGTCTCACGAAGAGAGTTGACCATCCGGCCAACT
ACGCTGCTGCTGGAGCATTCACCTGTGGCCTATTCGCCGCTGCCGTTGGA
GGCTGGGTACCAGCAGGTCCAGCTGCGGCGTTTGGGGCAGCTATTTCTGG
GGCCGCTGCCACAGCTCAACAATCTTTGGAACAACTTGTAGCCCAAAGCA
ATGGCAGGCTTGACATTGTTCAAGCTCAAGAACCAGAGGCTTCTGTTGGT
AGAGTGATAAGAACATTGGAAGAGAATCTTGCGTCGCATCCACTTCGTGC
TGCCAGCCGTGAAGACCCTGTTGGTTCCCCCGATGGCCCTCAAACATAG
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protein sequence of Ggra5115.t1

>Ggra5115.t1 ID=Ggra5115.t1|Name=Ggra5115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MSSDRENVDISKNGPVKGHSEKVKSIRDAFRRLEPGETPPKAPESLRTWC
AQTTYGVIGGMLFGGYRGLQQARNKNIPSPVPTTSAQHRVAVFFVRDGIL
TGSRIGVFVSLFSATALLVGNSGLTKRVDHPANYAAAGAFTCGLFAAAVG
GWVPAGPAAAFGAAISGAAATAQQSLEQLVAQSNGRLDIVQAQEPEASVG
RVIRTLEENLASHPLRAASREDPVGSPDGPQT*
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mRNA from alignment at tig00000069_pilon:502462..503160-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5115.t1 ID=Ggra5115.t1|Name=Ggra5115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000069_pilon:502462..503160- (Gracilaria gracilis GNS1m male)
ATGTCCTCAGACAGGGAAAATGTCGATATCTCCAAGAACGGGCCAGTTAA
AGGACATTCAGAAAAAGTGAAATCTATTAGAGATGCATTCCGACGTCTAG
AGCCCGGAGAAACACCTCCAAAGGCCCCGGAGTCTTTACGTACCTGGTGC
GCTCAGACGACGTATGGCGTTATTGGTGGCATGTTGTTTGGTGGCTATCG
CGGATTGCAACAAGCGCGAAACAAGAACATCCCGAGCCCTGTACCAACTA
CCTCCGCGCAGCACCGTGTCGCTGTGTTCTTTGTTCGCGACGGTATTCTA
ACAGGTTCTCGTATCGGTGTTTTTGTGTCACTGTTTTCTGCCACAGCTCT
TCTAGTCGGAAATTCAGGTCTCACGAAGAGAGTTGACCATCCGGCCAACT
ACGCTGCTGCTGGAGCATTCACCTGTGGCCTATTCGCCGCTGCCGTTGGA
GGCTGGGTACCAGCAGGTCCAGCTGCGGCGTTTGGGGCAGCTATTTCTGG
GGCCGCTGCCACAGCTCAACAATCTTTGGAACAACTTGTAGCCCAAAGCA
ATGGCAGGCTTGACATTGTTCAAGCTCAAGAACCAGAGGCTTCTGTTGGT
AGAGTGATAAGAACATTGGAAGAGAATCTTGCGTCGCATCCACTTCGTGC
TGCCAGCCGTGAAGACCCTGTTGGTTCCCCCGATGGCCCTCAAACATAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:502462..503160-

>Ggra5115.t1 ID=Ggra5115.t1|Name=Ggra5115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000069_pilon:502462..503160- (Gracilaria gracilis GNS1m male)
ATGTCCTCAGACAGGGAAAATGTCGATATCTCCAAGAACGGGCCAGTTAA
AGGACATTCAGAAAAAGTGAAATCTATTAGAGATGCATTCCGACGTCTAG
AGCCCGGAGAAACACCTCCAAAGGCCCCGGAGTCTTTACGTACCTGGTGC
GCTCAGACGACGTATGGCGTTATTGGTGGCATGTTGTTTGGTGGCTATCG
CGGATTGCAACAAGCGCGAAACAAGAACATCCCGAGCCCTGTACCAACTA
CCTCCGCGCAGCACCGTGTCGCTGTGTTCTTTGTTCGCGACGGTATTCTA
ACAGGTTCTCGTATCGGTGTTTTTGTGTCACTGTTTTCTGCCACAGCTCT
TCTAGTCGGAAATTCAGGTCTCACGAAGAGAGTTGACCATCCGGCCAACT
ACGCTGCTGCTGGAGCATTCACCTGTGGCCTATTCGCCGCTGCCGTTGGA
GGCTGGGTACCAGCAGGTCCAGCTGCGGCGTTTGGGGCAGCTATTTCTGG
GGCCGCTGCCACAGCTCAACAATCTTTGGAACAACTTGTAGCCCAAAGCA
ATGGCAGGCTTGACATTGTTCAAGCTCAAGAACCAGAGGCTTCTGTTGGT
AGAGTGATAAGAACATTGGAAGAGAATCTTGCGTCGCATCCACTTCGTGC
TGCCAGCCGTGAAGACCCTGTTGGTTCCCCCGATGGCCCTCAAACATAG
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