Ggra5031.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5031.t1
Unique Name	Ggra5031.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	342

Homology

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BLAST of Ggra5031.t1 vs. uniprot
Match: A0A2V3IQ24 (Retrotrans_gag domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ24_9FLOR)

HSP 1 Score: 212 bits (539), Expect = 3.180e-65
Identity = 107/152 (70.39%), Postives = 125/152 (82.24%), Query Frame = 0

Query:   23 ISSLQDELQTLRNAVKLQAELIEKFQSRLGDPEDLPAPNRTQSVGRNAMKAPPISMFSGKATDRSSEKVKSFVYSIRKYGKLCNYSEVNMLDLAECYLQDRAASWMMRLEKENRKPMSLEELQKAIVNEFVPANEKDAPRVKPMDLRMKDSN 174
            +SSLQ+E+Q+L+  +K Q ELIEK Q+RL    ++    RT S G+N ++APPI+MF+GKA DR+SEKVKSF YSI KYGKLCNYSE NMLDLAECYLQDRAASWMMRLE ENRKP SLEELQK +V+EFVPANEK +  VK MDLRMKDSN
Sbjct:    2 LSSLQEEVQSLKATLKTQTELIEKLQARLESTNNVTVQTRTPSAGKNTIRAPPITMFAGKAEDRNSEKVKSFFYSIPKYGKLCNYSEHNMLDLAECYLQDRAASWMMRLENENRKPTSLEELQKTMVDEFVPANEKASAPVKLMDLRMKDSN 153

[Close]

BLAST of Ggra5031.t1 vs. uniprot
Match: A0A2V3IEV0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEV0_9FLOR)

HSP 1 Score: 97.8 bits (242), Expect = 1.450e-19
Identity = 72/225 (32.00%), Postives = 106/225 (47.11%), Query Frame = 0

Query:   16 VQNEVPAISSLQDELQTLRNAVKLQAELIEKFQSRLGDPEDLPA-----------------PNRTQSVGRNAMKAPPISMFSGKATDRSSEKVKSFVYSIRKYGKLCN-YSEVNMLDLAECYLQDRAASWMMRLEKENRKPMSLEELQKAIVNEFVPANEKDAPRVKPMDLRMKDSNCLNDHITKFEDLVAICGTIDNVANIYFFNSLSKAFKGKFAERFPTSQP 222
            ++ +  AI +L+ +L  LR +    +  +       G P D                    PN+T       +K+     + GK  +R+S KV+SF+ SIR    LC   +    +D+A C L+D A  W  R+        SLE+LQ A++ EFVPANE    R+  + LRM     L  HI+KF +L  ICGT    +  YF  SL   F+ K +ER+P+ QP
Sbjct:   88 LETQQAAIEALRSQLSALRASDNTHSSSVPAIVQEKGAPPDARTAQHDPLQLHSTFQEQSKPNQTPL---QVLKSSNFLPYCGKDHERNSTKVRSFISSIRIVSNLCRGLTAREEVDIAVCLLRDHADLWYNRVTLTGEHFASLEQLQAAMIQEFVPANEHANARLSLIKLRMNGP--LEPHISKFRELTDICGTPIIESFTYFQLSLPTLFRKKLSERYPSGQP 307

The following BLAST results are available for this feature:

BLAST of Ggra5031.t1 vs. uniprot

BLAST of Ggra5031.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IQ24	3.180e-65	70.39	Retrotrans_gag domain-containing protein n=1 Tax=G...	[more]
A0A2V3IEV0	1.450e-19	32.00	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 115..194 e-value: 5.1E-6 score: 26.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:113980..115005 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5031.t1	Ggra5031.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000069_pilon 113980..115005 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5031.t1 ID=Ggra5031.t1|Name=Ggra5031.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MPRNTRGLSSADNEDVQNEVPAISSLQDELQTLRNAVKLQAELIEKFQSR
LGDPEDLPAPNRTQSVGRNAMKAPPISMFSGKATDRSSEKVKSFVYSIRK
YGKLCNYSEVNMLDLAECYLQDRAASWMMRLEKENRKPMSLEELQKAIVN
EFVPANEKDAPRVKPMDLRMKDSNCLNDHITKFEDLVAICGTIDNVANIY
FFNSLSKAFKGKFAERFPTSQPLDRFGTASIQPAYDYARTLELSLQLTRE
SQKDQNHAGKSYGKKKTSSKNCGTSNDSAKSTGQRNESKDPEAVSWGKAR
KGENGHFRQSDRCFKCRMKGWSDPNYPCKKDARQDNHSSKN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom