Ggra5957.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5957.t1
Unique NameGgra5957.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:721307..722107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5957Ggra5957Gracilaria gracilis GNS1m malegenetig00000068_pilon 721307..722107 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5957.t1.stop1Ggra5957.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 721307..721309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5957.t1.CDS1Ggra5957.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 721307..722107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5957.t1.exon1Ggra5957.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 721307..722107 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5957.t1.start1Ggra5957.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 722105..722107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5957.t1Ggra5957.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 721307..722107 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5957.t1 ID=Ggra5957.t1|Name=Ggra5957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MCTPRDAAAPSPSLTLHPARLAACALVLACVTIVTALLLTHFYPGRFHIH
PYPYLSDAGLRDPERMLLAIGLCFSANLLLPLIFSLFLYFSETVPPTLFP
TLPPWLPRPRVLAQLLLYSGLSLAFFLTLFSSVPGFWFFHHVFAALFATS
AATWSLTVALLTHVVHRRAPYVAYVCAAIQMAVIALFSCLWISLRLRFPF
PLIPNKDPRFVYMAALEYVGTTAFLICVRLATRHARPFHLSLQLHRSRSL
QHDSRTRPKSISIIAP*
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spliced messenger RNA

>Ggra5957.t1 ID=Ggra5957.t1|Name=Ggra5957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000068_pilon:721307..722107- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTACGCCACGCGACGCCGCTGCGCCGTCGCCCTCTCTCACGTTGCA
CCCCGCGCGTCTCGCCGCGTGTGCGCTCGTGCTCGCGTGCGTCACAATTG
TCACCGCGCTGCTTTTGACGCATTTCTACCCCGGCCGCTTCCACATCCAT
CCATACCCGTATCTCAGCGATGCCGGCCTTCGTGATCCGGAGCGCATGTT
GCTCGCTATCGGCCTTTGTTTCTCCGCCAATCTTCTTCTGCCCTTAATCT
TCTCTCTATTCCTCTACTTCTCCGAGACCGTCCCCCCAACGTTGTTCCCC
ACGCTCCCACCGTGGCTGCCGCGTCCACGCGTGCTGGCGCAGCTCTTGCT
CTACAGCGGTCTCTCGCTGGCGTTTTTTCTCACGCTGTTCTCCTCCGTGC
CCGGCTTCTGGTTTTTCCACCACGTTTTTGCCGCCCTGTTTGCAACAAGC
GCCGCTACTTGGAGTTTGACCGTCGCCTTACTGACACACGTAGTGCATAG
GCGCGCGCCGTACGTCGCGTACGTGTGCGCCGCCATTCAGATGGCCGTCA
TCGCGCTGTTCTCCTGCCTATGGATTTCGCTGCGACTACGCTTTCCATTC
CCGTTGATCCCTAACAAGGATCCGCGTTTTGTGTACATGGCCGCGTTGGA
ATACGTCGGCACAACAGCCTTCCTAATCTGCGTGCGTCTTGCAACCCGTC
ACGCTCGACCGTTCCACCTCTCTCTACAGCTGCATCGCAGTCGCTCGCTA
CAGCACGACTCTCGCACGCGCCCCAAGTCCATCTCGATCATCGCCCCCTG
A
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protein sequence of Ggra5957.t1

>Ggra5957.t1 ID=Ggra5957.t1|Name=Ggra5957.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MCTPRDAAAPSPSLTLHPARLAACALVLACVTIVTALLLTHFYPGRFHIH
PYPYLSDAGLRDPERMLLAIGLCFSANLLLPLIFSLFLYFSETVPPTLFP
TLPPWLPRPRVLAQLLLYSGLSLAFFLTLFSSVPGFWFFHHVFAALFATS
AATWSLTVALLTHVVHRRAPYVAYVCAAIQMAVIALFSCLWISLRLRFPF
PLIPNKDPRFVYMAALEYVGTTAFLICVRLATRHARPFHLSLQLHRSRSL
QHDSRTRPKSISIIAP*
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mRNA from alignment at tig00000068_pilon:721307..722107-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5957.t1 ID=Ggra5957.t1|Name=Ggra5957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000068_pilon:721307..722107- (Gracilaria gracilis GNS1m male)
ATGTGTACGCCACGCGACGCCGCTGCGCCGTCGCCCTCTCTCACGTTGCA
CCCCGCGCGTCTCGCCGCGTGTGCGCTCGTGCTCGCGTGCGTCACAATTG
TCACCGCGCTGCTTTTGACGCATTTCTACCCCGGCCGCTTCCACATCCAT
CCATACCCGTATCTCAGCGATGCCGGCCTTCGTGATCCGGAGCGCATGTT
GCTCGCTATCGGCCTTTGTTTCTCCGCCAATCTTCTTCTGCCCTTAATCT
TCTCTCTATTCCTCTACTTCTCCGAGACCGTCCCCCCAACGTTGTTCCCC
ACGCTCCCACCGTGGCTGCCGCGTCCACGCGTGCTGGCGCAGCTCTTGCT
CTACAGCGGTCTCTCGCTGGCGTTTTTTCTCACGCTGTTCTCCTCCGTGC
CCGGCTTCTGGTTTTTCCACCACGTTTTTGCCGCCCTGTTTGCAACAAGC
GCCGCTACTTGGAGTTTGACCGTCGCCTTACTGACACACGTAGTGCATAG
GCGCGCGCCGTACGTCGCGTACGTGTGCGCCGCCATTCAGATGGCCGTCA
TCGCGCTGTTCTCCTGCCTATGGATTTCGCTGCGACTACGCTTTCCATTC
CCGTTGATCCCTAACAAGGATCCGCGTTTTGTGTACATGGCCGCGTTGGA
ATACGTCGGCACAACAGCCTTCCTAATCTGCGTGCGTCTTGCAACCCGTC
ACGCTCGACCGTTCCACCTCTCTCTACAGCTGCATCGCAGTCGCTCGCTA
CAGCACGACTCTCGCACGCGCCCCAAGTCCATCTCGATCATCGCCCCCTG
A
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Coding sequence (CDS) from alignment at tig00000068_pilon:721307..722107-

>Ggra5957.t1 ID=Ggra5957.t1|Name=Ggra5957.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000068_pilon:721307..722107- (Gracilaria gracilis GNS1m male)
ATGTGTACGCCACGCGACGCCGCTGCGCCGTCGCCCTCTCTCACGTTGCA
CCCCGCGCGTCTCGCCGCGTGTGCGCTCGTGCTCGCGTGCGTCACAATTG
TCACCGCGCTGCTTTTGACGCATTTCTACCCCGGCCGCTTCCACATCCAT
CCATACCCGTATCTCAGCGATGCCGGCCTTCGTGATCCGGAGCGCATGTT
GCTCGCTATCGGCCTTTGTTTCTCCGCCAATCTTCTTCTGCCCTTAATCT
TCTCTCTATTCCTCTACTTCTCCGAGACCGTCCCCCCAACGTTGTTCCCC
ACGCTCCCACCGTGGCTGCCGCGTCCACGCGTGCTGGCGCAGCTCTTGCT
CTACAGCGGTCTCTCGCTGGCGTTTTTTCTCACGCTGTTCTCCTCCGTGC
CCGGCTTCTGGTTTTTCCACCACGTTTTTGCCGCCCTGTTTGCAACAAGC
GCCGCTACTTGGAGTTTGACCGTCGCCTTACTGACACACGTAGTGCATAG
GCGCGCGCCGTACGTCGCGTACGTGTGCGCCGCCATTCAGATGGCCGTCA
TCGCGCTGTTCTCCTGCCTATGGATTTCGCTGCGACTACGCTTTCCATTC
CCGTTGATCCCTAACAAGGATCCGCGTTTTGTGTACATGGCCGCGTTGGA
ATACGTCGGCACAACAGCCTTCCTAATCTGCGTGCGTCTTGCAACCCGTC
ACGCTCGACCGTTCCACCTCTCTCTACAGCTGCATCGCAGTCGCTCGCTA
CAGCACGACTCTCGCACGCGCCCCAAGTCCATCTCGATCATCGCCCCCTG
A
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