Ggra5957.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5957.t1
Unique NameGgra5957.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Homology
BLAST of Ggra5957.t1 vs. uniprot
Match: A0A2V3J3A5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3A5_9FLOR)

HSP 1 Score: 254 bits (648), Expect = 3.710e-81
Identity = 146/257 (56.81%), Postives = 183/257 (71.21%), Query Frame = 0
Query:   13 SLTLHPARLAACALVLACVTIVTALLLTHFYPGRFHIHPYPYLSDAGLRDPERMLLAIGLCFSANLLLPLIFSLFLYFSETVPPT-----LFPTLPPWLPRPRVLAQLLLYSGLSLAFFLTLFSSVPGFWFFHHVFAALFATSAATWSLTVALLTHVVHRRAPYVAYVCAAIQMAVIALFSCLWISLRLRFPFPLIPNKDPRFVYMAALEYVGTTAFLICVRLATRHARPFHLSLQLHRSRSLQHDSRTRPKSISII 264
            +L LHPA+LA   + L+  TIV +LLLT FYP RF IHPYPYLSDAGLRDPER +L+ G+  SA L LPL+ +++L++S ++P T     L   LPP       L +L L SG+ L+ FL LF+SVPGFW  HHVFAALFA SA TWS+ VA+++HV  RR P +AY+CA +Q+ VI  F+ LWISLRLR PF LIPNKDPRFVYMA LEYVGTTAFL  + LA +    +H+SL+L+R R   HD +TRP S + I
Sbjct:   16 ALKLHPAQLARYTVFLSAPTIVASLLLTQFYPKRFRIHPYPYLSDAGLRDPERFILSGGMAISAALFLPLVAAIYLHYSHSLPSTQIDHPLSRHLPP---LQNFLPRLSLLSGILLSLFLALFTSVPGFWIPHHVFAALFALSAGTWSVCVAVMSHVQGRRKPRLAYLCALVQLIVIVSFAMLWISLRLRIPFALIPNKDPRFVYMALLEYVGTTAFLTSIILAAQKVSGWHISLRLYRDRP-SHD-KTRPDSFTTI 267          
BLAST of Ggra5957.t1 vs. uniprot
Match: R7QEH0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEH0_CHOCR)

HSP 1 Score: 177 bits (448), Expect = 2.600e-50
Identity = 112/263 (42.59%), Postives = 156/263 (59.32%), Query Frame = 0
Query:   11 SPSLTLHPARLAACALVLACVTIVTALLLTHFYPGRFHIHPYPYLSDAGLRDPERMLLAIGLCFSANLLLPLIFSLFLYFSETVPPTLFPTLPP-------------WL--PRPRV-----LAQLLLYSGLSLAFFLTLFSSVPGFWFFHHVFAALFATSAATWSLTVALLTHVV------HRRAPY---VAYVCAAIQMAVIALFSCLWISLRLRFPFPLIPNKDPRFVYMAALEYVGTTAFLICVRLATRHARPFHLSLQL 244
            +P L L P  LA   ++ + VTI+TAL LTHF PGRFHIHPYPYLSDAGLRDPER++L+ GL  SA L +P+  +L+L     +         P             WL  P PRV     L ++ LY+G+ LAFFL  F+++PG++FFHH+FA  FA S+A W L+ AL ++         RR      V +V   IQ  V+ +F  +W S++ + P+ +IPNKDPRFV +A LEY+GT+AFLI + + +       ++L L
Sbjct:   47 TPVLYLRPHLLARAVVITSSVTILTALFLTHFIPGRFHIHPYPYLSDAGLRDPERIVLSFGLALSAALFVPVAAALYLLHHAYLDGARHVRSAPALTLSVTRGKSRRWLCLPLPRVVSCDVLLRVGLYAGILLAFFLAFFTAIPGWFFFHHIFALGFALSSAAWCLSHALFSYAKISADSEQRRKMSRVRVMFVLIGIQAMVVGMFGVIWGSVKAQIPYKMIPNKDPRFVMLAILEYLGTSAFLIFIWMVSNELLTQRITLSL 309          
BLAST of Ggra5957.t1 vs. uniprot
Match: A0A1X6P9S9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9S9_PORUM)

HSP 1 Score: 120 bits (301), Expect = 6.220e-29
Identity = 95/252 (37.70%), Postives = 123/252 (48.81%), Query Frame = 0
Query:   12 PSLTLHPARLAACALVLACVTIVTALLLTHFYPGRFHIHPYPYLSDAGLRDPERMLLAIGLCFSANLLLPLIFSLFLYFSETVPPTLFPTLPPWLP-----RPRVLAQLLLYSGLSLA--------FFLTLFSSVPGFWFFHHVFAALFATSAATW---SLTVALLT---HVVHR-------------------RAPYVAYVCAAIQMAVIALFSCLWISLRLRFPFPLIPNKDPRFVYMAALEYVGTTAFL 225
            P L ++PA      +  A VT+   L LT +YPGRFHIHP PY+SDAGLRDPER+LL  GL  S  L +PL  ++ L+        L  +LPP +P       R +   ++ + + LA         FL   +SVPG W  HH  AA FA   A W   S+    LT    V  R                   R   VA   +A+   +I +F  +W ++RL  P P I NKD RFV MA LEY+GT  FL
Sbjct:   18 PCLRINPAACTTACIATASVTLAACLTLTQYYPGRFHIHPLPYVSDAGLRDPERILLGAGLSLSGALFIPLSIAVRLHQRS-----LLSSLPPLIPVGGARSGRRIPVAIVATAIELAGRAGWGVFLFLVATASVPGRWLAHHAVAASFALCGAVWGGCSVGTLWLTSGGRVAPRPDGAGGTGGGPGAAVGSRARRVTVAAWLSALLCTIIVVFVAVWATVRLDMP-PKIKNKDKRFVAMAILEYIGTGCFL 263          
The following BLAST results are available for this feature:
BLAST of Ggra5957.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J3A53.710e-8156.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QEH02.600e-5042.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P9S96.220e-2937.70Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..91
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..209
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..45
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 131..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 232..266
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 171..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..130
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 166..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 142..165
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 210..231
NoneNo IPR availableTMHMMTMhelixcoord: 172..194
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 143..165
NoneNo IPR availableTMHMMTMhelixcoord: 111..133
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 209..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:721307..722107 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5957.t1Ggra5957.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 721307..722107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5957.t1 ID=Ggra5957.t1|Name=Ggra5957.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MCTPRDAAAPSPSLTLHPARLAACALVLACVTIVTALLLTHFYPGRFHIH
PYPYLSDAGLRDPERMLLAIGLCFSANLLLPLIFSLFLYFSETVPPTLFP
TLPPWLPRPRVLAQLLLYSGLSLAFFLTLFSSVPGFWFFHHVFAALFATS
AATWSLTVALLTHVVHRRAPYVAYVCAAIQMAVIALFSCLWISLRLRFPF
PLIPNKDPRFVYMAALEYVGTTAFLICVRLATRHARPFHLSLQLHRSRSL
QHDSRTRPKSISIIAP*
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