Ggra5833.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5833.t1
Unique NameGgra5833.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:36235..36876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ29251
PFAMsIPPT
Max annot lvl35493|Streptophyta
KEGG rclassRC02820
KEGG koko:K00791
KEGG ReactionR01122
KEGG Pathwayko00908,ko01100,ko01110,map00908,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue8.06e-19
EggNOG OGsCOG0324@1|root,KOG1384@2759|Eukaryota,37HQM@33090|Viridiplantae,3GCCH@35493|Streptophyta
EC2.5.1.75
DescriptionBelongs to the IPP transferase family
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01006,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5833Ggra5833Gracilaria gracilis GNS1m malegenetig00000068_pilon 36235..36876 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5833.t1.start1Ggra5833.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 36235..36237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5833.t1.CDS1Ggra5833.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 36235..36876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5833.t1.exon1Ggra5833.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 36235..36876 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5833.t1.stop1Ggra5833.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 36874..36876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5833.t1Ggra5833.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 36235..36876 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5833.t1 ID=Ggra5833.t1|Name=Ggra5833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MSLQGDAPQTRYSSDTLDYDFRCVFSYDERIPWNPRIDARCEEMVLPRGN
ITGEHEQLMEKSILTEICRLLLCSGLRIAPESPSFAIGYRQTIAYLTERA
LACQKQNTQAQISSPEGANSDERSEEAIRTFRSFLVGFQAATRGYAKEQL
KWFRKEKLFHWIKCDSNSEEALDTIVGMDEIEHEQFRKEHEAEQLERRED
IIRQGKEMKRYYY*
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spliced messenger RNA

>Ggra5833.t1 ID=Ggra5833.t1|Name=Ggra5833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000068_pilon:36235..36876+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTACAAGGCGATGCTCCTCAGACCCGGTACTCGAGCGATACTCT
GGACTATGACTTTAGATGCGTGTTCTCGTACGATGAGCGCATTCCTTGGA
ATCCGAGAATTGACGCACGATGTGAGGAGATGGTGCTTCCTCGAGGGAAT
ATAACTGGAGAGCATGAACAGCTTATGGAGAAAAGCATTCTCACAGAAAT
TTGTCGTCTTCTGCTCTGCAGCGGTTTGCGCATAGCACCTGAATCTCCAT
CATTTGCTATCGGGTACCGCCAGACTATTGCATATCTTACAGAAAGAGCG
CTTGCATGTCAAAAGCAAAACACGCAAGCGCAAATTAGTTCACCCGAAGG
TGCAAACAGTGATGAGCGTTCCGAAGAAGCTATTCGCACTTTCCGTTCTT
TTCTGGTGGGATTTCAGGCAGCAACCCGAGGATATGCGAAGGAACAGCTG
AAATGGTTTCGCAAGGAAAAGTTGTTTCACTGGATAAAGTGTGATTCCAA
TTCGGAAGAGGCGTTGGACACTATTGTGGGTATGGACGAAATCGAGCATG
AGCAGTTCCGGAAGGAGCACGAAGCAGAGCAGCTGGAGAGAAGGGAGGAC
ATTATACGGCAAGGCAAGGAGATGAAACGCTATTATTACTGA
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protein sequence of Ggra5833.t1

>Ggra5833.t1 ID=Ggra5833.t1|Name=Ggra5833.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MSLQGDAPQTRYSSDTLDYDFRCVFSYDERIPWNPRIDARCEEMVLPRGN
ITGEHEQLMEKSILTEICRLLLCSGLRIAPESPSFAIGYRQTIAYLTERA
LACQKQNTQAQISSPEGANSDERSEEAIRTFRSFLVGFQAATRGYAKEQL
KWFRKEKLFHWIKCDSNSEEALDTIVGMDEIEHEQFRKEHEAEQLERRED
IIRQGKEMKRYYY*
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mRNA from alignment at tig00000068_pilon:36235..36876+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5833.t1 ID=Ggra5833.t1|Name=Ggra5833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000068_pilon:36235..36876+ (Gracilaria gracilis GNS1m male)
ATGTCCTTACAAGGCGATGCTCCTCAGACCCGGTACTCGAGCGATACTCT
GGACTATGACTTTAGATGCGTGTTCTCGTACGATGAGCGCATTCCTTGGA
ATCCGAGAATTGACGCACGATGTGAGGAGATGGTGCTTCCTCGAGGGAAT
ATAACTGGAGAGCATGAACAGCTTATGGAGAAAAGCATTCTCACAGAAAT
TTGTCGTCTTCTGCTCTGCAGCGGTTTGCGCATAGCACCTGAATCTCCAT
CATTTGCTATCGGGTACCGCCAGACTATTGCATATCTTACAGAAAGAGCG
CTTGCATGTCAAAAGCAAAACACGCAAGCGCAAATTAGTTCACCCGAAGG
TGCAAACAGTGATGAGCGTTCCGAAGAAGCTATTCGCACTTTCCGTTCTT
TTCTGGTGGGATTTCAGGCAGCAACCCGAGGATATGCGAAGGAACAGCTG
AAATGGTTTCGCAAGGAAAAGTTGTTTCACTGGATAAAGTGTGATTCCAA
TTCGGAAGAGGCGTTGGACACTATTGTGGGTATGGACGAAATCGAGCATG
AGCAGTTCCGGAAGGAGCACGAAGCAGAGCAGCTGGAGAGAAGGGAGGAC
ATTATACGGCAAGGCAAGGAGATGAAACGCTATTATTACTGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:36235..36876+

>Ggra5833.t1 ID=Ggra5833.t1|Name=Ggra5833.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000068_pilon:36235..36876+ (Gracilaria gracilis GNS1m male)
ATGTCCTTACAAGGCGATGCTCCTCAGACCCGGTACTCGAGCGATACTCT
GGACTATGACTTTAGATGCGTGTTCTCGTACGATGAGCGCATTCCTTGGA
ATCCGAGAATTGACGCACGATGTGAGGAGATGGTGCTTCCTCGAGGGAAT
ATAACTGGAGAGCATGAACAGCTTATGGAGAAAAGCATTCTCACAGAAAT
TTGTCGTCTTCTGCTCTGCAGCGGTTTGCGCATAGCACCTGAATCTCCAT
CATTTGCTATCGGGTACCGCCAGACTATTGCATATCTTACAGAAAGAGCG
CTTGCATGTCAAAAGCAAAACACGCAAGCGCAAATTAGTTCACCCGAAGG
TGCAAACAGTGATGAGCGTTCCGAAGAAGCTATTCGCACTTTCCGTTCTT
TTCTGGTGGGATTTCAGGCAGCAACCCGAGGATATGCGAAGGAACAGCTG
AAATGGTTTCGCAAGGAAAAGTTGTTTCACTGGATAAAGTGTGATTCCAA
TTCGGAAGAGGCGTTGGACACTATTGTGGGTATGGACGAAATCGAGCATG
AGCAGTTCCGGAAGGAGCACGAAGCAGAGCAGCTGGAGAGAAGGGAGGAC
ATTATACGGCAAGGCAAGGAGATGAAACGCTATTATTACTGA
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