Ggra5849.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5849.t1
Unique NameGgra5849.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:130994..131929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004343412.1
PFAMsELO
Max annot lvl33154|Opisthokonta
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K10249
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Evalue1.35e-39
EggNOG OGsKOG3071@1|root,KOG3071@2759|Eukaryota,38BJ3@33154|Opisthokonta
EC2.3.1.199
Descriptionfatty acid elongation, saturated fatty acid
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5849Ggra5849Gracilaria gracilis GNS1m malegenetig00000068_pilon 130994..131929 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5849.t1.stop1Ggra5849.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 130994..130996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5849.t1.CDS1Ggra5849.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 130994..131929 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5849.t1.exon1Ggra5849.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 130994..131929 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5849.t1.start1Ggra5849.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 131927..131929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5849.t1Ggra5849.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 130994..131929 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5849.t1 ID=Ggra5849.t1|Name=Ggra5849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MAENISHISTESVPDAFEILPPTVKRLHTLMSPLNNFLPLLEPLQQKVGP
LAAQFDSAYEKLFGPTHAYSKSFPLMSPHNAAFFAALYLGLVLVLMPAFR
LAKFKLSLKPLMKVYNAFMVVLSTYMCVQAILLARASNSSVFCVPMATGV
AGERMAQLVWVFTYSKVVEFLDTVFMVFEARYRQVSFLHVYHHITILAYW
FTILWMAPGSDAYFSLAGNSFIHVLMYGYYLLASFGYSPWWKYYITKMQI
LQFCCFCVQSVYVGYVMTEKKCAFPNVLSRGLLWYMLTLIALFLHFLITN
KRSKKQKAKTS*
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spliced messenger RNA

>Ggra5849.t1 ID=Ggra5849.t1|Name=Ggra5849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000068_pilon:130994..131929- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGAACATATCGCATATCAGTACCGAAAGCGTCCCAGATGCCTT
CGAGATCCTGCCGCCCACAGTCAAGAGGCTTCACACATTAATGTCGCCTC
TGAACAACTTTCTCCCCCTTCTTGAGCCGCTGCAGCAGAAAGTCGGTCCG
CTTGCAGCTCAATTTGACTCTGCATACGAGAAACTCTTCGGTCCGACACA
CGCGTATTCCAAGAGCTTTCCGTTGATGTCACCTCACAATGCCGCCTTTT
TTGCCGCTCTCTATCTTGGTCTTGTGCTGGTGCTCATGCCCGCGTTCCGT
CTTGCAAAGTTCAAGCTTTCTCTCAAGCCTTTGATGAAAGTTTATAACGC
GTTTATGGTGGTGCTCAGTACATACATGTGCGTGCAAGCTATTCTACTTG
CGAGAGCATCTAACTCGTCCGTGTTTTGCGTGCCGATGGCCACTGGAGTG
GCGGGTGAGAGAATGGCGCAGTTGGTGTGGGTGTTCACGTATTCGAAGGT
GGTTGAGTTTTTGGACACAGTCTTCATGGTTTTCGAAGCGCGTTACCGTC
AAGTATCATTCCTTCACGTCTACCACCACATCACAATCTTAGCATACTGG
TTCACCATTTTGTGGATGGCACCTGGATCTGATGCATACTTCTCTCTGGC
TGGAAACAGCTTTATACACGTTCTCATGTACGGTTACTACCTTCTGGCAT
CCTTCGGCTATTCTCCGTGGTGGAAGTATTACATCACTAAGATGCAAATT
CTCCAATTCTGCTGCTTTTGCGTGCAGAGCGTTTACGTGGGGTATGTCAT
GACTGAGAAGAAATGCGCCTTCCCGAATGTGCTTAGCAGAGGTTTGTTAT
GGTACATGCTCACTCTTATCGCCCTTTTCTTGCACTTTTTGATCACCAAC
AAGCGGTCAAAGAAGCAAAAAGCAAAGACCTCGTAG
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protein sequence of Ggra5849.t1

>Ggra5849.t1 ID=Ggra5849.t1|Name=Ggra5849.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MAENISHISTESVPDAFEILPPTVKRLHTLMSPLNNFLPLLEPLQQKVGP
LAAQFDSAYEKLFGPTHAYSKSFPLMSPHNAAFFAALYLGLVLVLMPAFR
LAKFKLSLKPLMKVYNAFMVVLSTYMCVQAILLARASNSSVFCVPMATGV
AGERMAQLVWVFTYSKVVEFLDTVFMVFEARYRQVSFLHVYHHITILAYW
FTILWMAPGSDAYFSLAGNSFIHVLMYGYYLLASFGYSPWWKYYITKMQI
LQFCCFCVQSVYVGYVMTEKKCAFPNVLSRGLLWYMLTLIALFLHFLITN
KRSKKQKAKTS*
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mRNA from alignment at tig00000068_pilon:130994..131929-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5849.t1 ID=Ggra5849.t1|Name=Ggra5849.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000068_pilon:130994..131929- (Gracilaria gracilis GNS1m male)
ATGGCTGAGAACATATCGCATATCAGTACCGAAAGCGTCCCAGATGCCTT
CGAGATCCTGCCGCCCACAGTCAAGAGGCTTCACACATTAATGTCGCCTC
TGAACAACTTTCTCCCCCTTCTTGAGCCGCTGCAGCAGAAAGTCGGTCCG
CTTGCAGCTCAATTTGACTCTGCATACGAGAAACTCTTCGGTCCGACACA
CGCGTATTCCAAGAGCTTTCCGTTGATGTCACCTCACAATGCCGCCTTTT
TTGCCGCTCTCTATCTTGGTCTTGTGCTGGTGCTCATGCCCGCGTTCCGT
CTTGCAAAGTTCAAGCTTTCTCTCAAGCCTTTGATGAAAGTTTATAACGC
GTTTATGGTGGTGCTCAGTACATACATGTGCGTGCAAGCTATTCTACTTG
CGAGAGCATCTAACTCGTCCGTGTTTTGCGTGCCGATGGCCACTGGAGTG
GCGGGTGAGAGAATGGCGCAGTTGGTGTGGGTGTTCACGTATTCGAAGGT
GGTTGAGTTTTTGGACACAGTCTTCATGGTTTTCGAAGCGCGTTACCGTC
AAGTATCATTCCTTCACGTCTACCACCACATCACAATCTTAGCATACTGG
TTCACCATTTTGTGGATGGCACCTGGATCTGATGCATACTTCTCTCTGGC
TGGAAACAGCTTTATACACGTTCTCATGTACGGTTACTACCTTCTGGCAT
CCTTCGGCTATTCTCCGTGGTGGAAGTATTACATCACTAAGATGCAAATT
CTCCAATTCTGCTGCTTTTGCGTGCAGAGCGTTTACGTGGGGTATGTCAT
GACTGAGAAGAAATGCGCCTTCCCGAATGTGCTTAGCAGAGGTTTGTTAT
GGTACATGCTCACTCTTATCGCCCTTTTCTTGCACTTTTTGATCACCAAC
AAGCGGTCAAAGAAGCAAAAAGCAAAGACCTCGTAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:130994..131929-

>Ggra5849.t1 ID=Ggra5849.t1|Name=Ggra5849.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000068_pilon:130994..131929- (Gracilaria gracilis GNS1m male)
ATGGCTGAGAACATATCGCATATCAGTACCGAAAGCGTCCCAGATGCCTT
CGAGATCCTGCCGCCCACAGTCAAGAGGCTTCACACATTAATGTCGCCTC
TGAACAACTTTCTCCCCCTTCTTGAGCCGCTGCAGCAGAAAGTCGGTCCG
CTTGCAGCTCAATTTGACTCTGCATACGAGAAACTCTTCGGTCCGACACA
CGCGTATTCCAAGAGCTTTCCGTTGATGTCACCTCACAATGCCGCCTTTT
TTGCCGCTCTCTATCTTGGTCTTGTGCTGGTGCTCATGCCCGCGTTCCGT
CTTGCAAAGTTCAAGCTTTCTCTCAAGCCTTTGATGAAAGTTTATAACGC
GTTTATGGTGGTGCTCAGTACATACATGTGCGTGCAAGCTATTCTACTTG
CGAGAGCATCTAACTCGTCCGTGTTTTGCGTGCCGATGGCCACTGGAGTG
GCGGGTGAGAGAATGGCGCAGTTGGTGTGGGTGTTCACGTATTCGAAGGT
GGTTGAGTTTTTGGACACAGTCTTCATGGTTTTCGAAGCGCGTTACCGTC
AAGTATCATTCCTTCACGTCTACCACCACATCACAATCTTAGCATACTGG
TTCACCATTTTGTGGATGGCACCTGGATCTGATGCATACTTCTCTCTGGC
TGGAAACAGCTTTATACACGTTCTCATGTACGGTTACTACCTTCTGGCAT
CCTTCGGCTATTCTCCGTGGTGGAAGTATTACATCACTAAGATGCAAATT
CTCCAATTCTGCTGCTTTTGCGTGCAGAGCGTTTACGTGGGGTATGTCAT
GACTGAGAAGAAATGCGCCTTCCCGAATGTGCTTAGCAGAGGTTTGTTAT
GGTACATGCTCACTCTTATCGCCCTTTTCTTGCACTTTTTGATCACCAAC
AAGCGGTCAAAGAAGCAAAAAGCAAAGACCTCGTAG
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