Ggra5908.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5908.t1
Unique NameGgra5908.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length146
Homology
BLAST of Ggra5908.t1 vs. uniprot
Match: A0A2V3INR3 (40S ribosomal protein S23 n=3 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A2V3INR3_9FLOR)

HSP 1 Score: 288 bits (736), Expect = 2.170e-98
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MGNGKPAGMRCARKLRTHRREQKWHNK+YSRKHS+TALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT
Sbjct:    1 MGNGKPAGMRCARKLRTHRREQKWHNKKYSRKHSSTALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145          
BLAST of Ggra5908.t1 vs. uniprot
Match: A0A5J4Z271 (40S ribosomal protein S23 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z271_PORPP)

HSP 1 Score: 248 bits (632), Expect = 1.570e-82
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG+GKP G+R ARKLR HRREQKW NKRY+R HS T LKANPFGGASHAKGIVLERIGIEAKQPNSAIRKS RVQLIKNGKKIAAFVP DGCLNF+EENDEVLISGFGR GHSVGD+PGVRFK VKV+GV+L+AL++ KKEKPRT
Sbjct:    1 MGSGKPRGIRSARKLRNHRREQKWANKRYARAHSLTGLKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSVRVQLIKNGKKIAAFVPRDGCLNFIEENDEVLISGFGRKGHSVGDIPGVRFKAVKVSGVALIALWKMKKEKPRT 145          
BLAST of Ggra5908.t1 vs. uniprot
Match: A0A1X6P1Y2 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1Y2_PORUM)

HSP 1 Score: 246 bits (628), Expect = 6.390e-82
Identity = 123/145 (84.83%), Postives = 134/145 (92.41%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG+GKPAG+R  RKL+ HRREQ WHNK+Y+RKHSATALKANPF GASHAKGIVLERIGIEAKQPNSAIRKS RVQLIKNGKKIAAFVP DG L++VE+NDEVL+SGFGR+GHSVGDLPGVRFKVVKVA VSLLALF  KKEKPR+
Sbjct:    1 MGSGKPAGLRAGRKLKNHRREQVWHNKKYARKHSATALKANPFAGASHAKGIVLERIGIEAKQPNSAIRKSVRVQLIKNGKKIAAFVPRDGSLSYVEDNDEVLVSGFGRAGHSVGDLPGVRFKVVKVANVSLLALFLEKKEKPRS 145          
BLAST of Ggra5908.t1 vs. uniprot
Match: J7G1C8 (60S ribosomal protein S23 n=2 Tax=Cryptophyceae TaxID=3027 RepID=J7G1C8_9CRYP)

HSP 1 Score: 238 bits (606), Expect = 1.440e-78
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPR 144
            MG+GKP G++ ARKLR HR++QKW++KRY+ +HS  ALKANP  GASHAKGIV+ERIGIEAKQPNSAIRK  RVQLIKNGKKIAAFVP DGCLNF+EENDEVLISGFGR GHSVGD+PGVRFKVVKVAGVSL++LFR KKEKP+
Sbjct:    1 MGSGKPRGIQAARKLRNHRKKQKWNDKRYTHRHSLAALKANPMKGASHAKGIVVERIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPNDGCLNFIEENDEVLISGFGRKGHSVGDIPGVRFKVVKVAGVSLISLFRRKKEKPK 144          
BLAST of Ggra5908.t1 vs. uniprot
Match: A0A2P2I7D0 (40S ribosomal protein S23 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I7D0_9CRUS)

HSP 1 Score: 236 bits (601), Expect = 8.340e-78
Identity = 114/145 (78.62%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG G+P G++ ARKLR HRR+QKW +K + +KH  TALKANPF GASHAKGIV+E+IGIEAKQPNSAIRK CRVQLIKNGKKIAAFVP DGCLNF++ENDEVL+SGFGR+GHSVGD+PGVRFKVVKVAGVSL ALF  KK+KPR+
Sbjct:    1 MGTGQPRGIKAARKLRNHRRKQKWASKHFKKKHLGTALKANPFEGASHAKGIVVEKIGIEAKQPNSAIRKCCRVQLIKNGKKIAAFVPNDGCLNFIDENDEVLVSGFGRAGHSVGDIPGVRFKVVKVAGVSLKALFTEKKDKPRS 145          
BLAST of Ggra5908.t1 vs. uniprot
Match: M4BPE8 (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 235 bits (600), Expect = 1.180e-77
Identity = 115/145 (79.31%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG  KP+G+RCARKLR HRR Q+W  K Y++ HS TA+KANP GG+S AKGIVLE+IGIEAKQPNSAIRKSCRVQLIKN KKIAAFVP DGCLNFV+ENDEVLISGFGR GH+VGD+PGVRFKVVKV+GVSLLAL++ KKEKPR+
Sbjct:    1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
BLAST of Ggra5908.t1 vs. uniprot
Match: A0A7N4V263 (40S ribosomal protein S23 n=2 Tax=Amniota TaxID=32524 RepID=A0A7N4V263_SARHA)

HSP 1 Score: 234 bits (597), Expect = 5.240e-77
Identity = 111/145 (76.55%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            +G GK  G+R ARKLR+HRR+QKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:   14 LGKGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 158          
BLAST of Ggra5908.t1 vs. uniprot
Match: A0A8C6VDN2 (40S ribosomal protein S23 n=3 Tax=Elapinae TaxID=42168 RepID=A0A8C6VDN2_NAJNA)

HSP 1 Score: 232 bits (592), Expect = 1.780e-76
Identity = 111/142 (78.17%), Postives = 128/142 (90.14%), Query Frame = 0
Query:    4 GKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            GK  G+R ARKLR+HRREQKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:    1 GKCRGLRTARKLRSHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 142          
BLAST of Ggra5908.t1 vs. uniprot
Match: Q5HZT5 (40S ribosomal protein S23 n=18 Tax=Euteleostomi TaxID=117571 RepID=Q5HZT5_XENTR)

HSP 1 Score: 232 bits (592), Expect = 1.840e-76
Identity = 111/142 (78.17%), Postives = 128/142 (90.14%), Query Frame = 0
Query:    4 GKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            GK  G+R ARKLR HRREQKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR+GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRAGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of Ggra5908.t1 vs. uniprot
Match: A8KB78 (40S ribosomal protein S23 n=63 Tax=cellular organisms TaxID=131567 RepID=A8KB78_DANRE)

HSP 1 Score: 232 bits (591), Expect = 2.610e-76
Identity = 111/142 (78.17%), Postives = 127/142 (89.44%), Query Frame = 0
Query:    4 GKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            GK  G+R ARKLR HRREQKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of Ggra5908.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INR32.170e-9898.6240S ribosomal protein S23 n=3 Tax=Rhodymeniophycid... [more]
A0A5J4Z2711.570e-8284.8340S ribosomal protein S23 n=1 Tax=Porphyridium pur... [more]
A0A1X6P1Y26.390e-8284.83Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
J7G1C81.440e-7880.5660S ribosomal protein S23 n=2 Tax=Cryptophyceae Ta... [more]
A0A2P2I7D08.340e-7878.6240S ribosomal protein S23 n=1 Tax=Hirondellea giga... [more]
M4BPE81.180e-7779.31Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A7N4V2635.240e-7776.5540S ribosomal protein S23 n=2 Tax=Amniota TaxID=32... [more]
A0A8C6VDN21.780e-7678.1740S ribosomal protein S23 n=3 Tax=Elapinae TaxID=4... [more]
Q5HZT51.840e-7678.1740S ribosomal protein S23 n=18 Tax=Euteleostomi Ta... [more]
A8KB782.610e-7678.1740S ribosomal protein S23 n=63 Tax=cellular organi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 9..144
e-value: 3.0E-53
score: 177.2
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 28..142
e-value: 8.72416E-75
score: 216.366
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 31..144
e-value: 1.8E-49
score: 166.1
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 18..145
e-value: 4.4E-32
score: 108.2
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..144
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 62..69
NoneNo IPR availableGENE3D2.40.50.140coord: 27..145
e-value: 8.6E-44
score: 149.8
NoneNo IPR availablePANTHERPTHR11652:SF1440S RIBOSOMAL PROTEIN S23coord: 4..144
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 22..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:490742..491179 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5908.t1Ggra5908.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 490742..491179 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5908.t1 ID=Ggra5908.t1|Name=Ggra5908.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005680Ribosomal_S23_euk/arc
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold