Ggra5897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5897.t1
Unique NameGgra5897.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:449137..451015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra004718.1-P
PFAMsMetallophos,PPP5,TPR_1,TPR_11,TPR_8
Max annot lvl35493|Streptophyta
KEGG koko:K04460
KEGG Pathwayko04010,map04010
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005911,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046686,GO:0046906,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0090056,GO:0097159,GO:0098827,GO:0104004,GO:0140096,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1902325
Evalue3.7e-158
EggNOG OGsCOG0639@1|root,KOG0376@2759|Eukaryota,37IEQ@33090|Viridiplantae,3GC8Z@35493|Streptophyta,3HQHC@3699|Brassicales
EC3.1.3.16
DescriptionPPP5 TPR repeat region
COG categoryU
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5897Ggra5897Gracilaria gracilis GNS1m malegenetig00000068_pilon 449137..451015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5897.t1Ggra5897.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 449137..451015 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5897.t1.start1Ggra5897.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 449137..449139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5897.t1.CDS1Ggra5897.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 449137..450514 +
Ggra5897.t1.CDS2Ggra5897.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000068_pilon 450631..450748 +
Ggra5897.t1.CDS3Ggra5897.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000068_pilon 450868..451015 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5897.t1.exon1Ggra5897.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 449137..450514 +
Ggra5897.t1.exon2Ggra5897.t1.exon2Gracilaria gracilis GNS1m maleexontig00000068_pilon 450631..450748 +
Ggra5897.t1.exon3Ggra5897.t1.exon3Gracilaria gracilis GNS1m maleexontig00000068_pilon 450868..451015 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5897.t1.intron1Ggra5897.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000068_pilon 450515..450630 +
Ggra5897.t1.intron2Ggra5897.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000068_pilon 450749..450867 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5897.t1.stop1Ggra5897.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 451013..451015 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5897.t1 ID=Ggra5897.t1|Name=Ggra5897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=548bp
MSADVFRAEELQQINQIKKEANDCFKNHRFHEAEKLYTRALNHALLLNVD
QNTRAVLFGNRAFTRLKLEQYGYAINDATSALSHDPNYIKAYYRRGSAYF
ALSRYKDAKRDYAIIAQRIPENKDTAAKLKECDKRIKEAAFAKAIEGDSL
RVHVCDTIDIASMQVPDSYDGPRIQPHGEITEKFVRDLIQCFRKQKRLHI
KYATMIVLAAKNIFDQLPNVVELPVTAGNSITVCGDVHGQYYDLADGIFE
RNGLPSAKNPYLFNGDFVDRGSFSVEVILTLLAFKAWCPEAIHLTRGNHE
SLNMNRIYGFEGEVRVKYTETIFNLFSETFQSLPLAYILDGSSTSDGRKA
FVVHGGLFSKDGVTIADINALNRKCEPDAGLMAEMLWSDPQEENGWGPSK
RGIGVAFGPDVTHRFLDLNGLDIVVRSHEMKDEGFEVSANGRLVTIFSAP
NYCDQMGNQVMSSSNDSEFLSSARFEVRFNSCTKDCGMNDYFANSLELID
VLDPDAANRLIEKCLARGRGPLNVGTVRSTTSMLLTLGSRASVGTKP*
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spliced messenger RNA

>Ggra5897.t1 ID=Ggra5897.t1|Name=Ggra5897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000068_pilon:449137..451015+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCTGACGTGTTTCGTGCAGAGGAGCTCCAACAGATCAATCAGAT
CAAGAAGGAGGCCAATGACTGCTTTAAGAACCATCGTTTCCATGAAGCAG
AGAAGCTTTACACCCGAGCGCTCAACCACGCTTTGCTCCTAAATGTAGAC
CAAAACACCCGTGCCGTCTTGTTCGGCAATCGCGCCTTTACTAGACTCAA
GCTCGAGCAGTATGGATACGCTATCAACGACGCCACCAGCGCTCTCTCAC
ACGATCCTAATTACATCAAGGCCTACTATCGACGCGGAAGTGCCTACTTT
GCACTCAGCAGGTACAAGGACGCCAAAAGAGACTATGCCATCATTGCCCA
GCGCATCCCGGAAAACAAGGACACCGCCGCCAAGCTCAAGGAATGTGACA
AACGAATCAAGGAAGCCGCCTTTGCAAAGGCCATTGAGGGCGATTCTCTA
CGCGTCCACGTCTGTGATACTATTGACATCGCCTCTATGCAAGTTCCTGA
CTCGTATGACGGGCCCCGAATACAACCGCACGGCGAGATCACTGAAAAGT
TTGTGCGCGATCTCATTCAGTGCTTCCGAAAGCAGAAGCGCTTGCACATC
AAGTATGCCACCATGATTGTGCTGGCTGCGAAGAACATCTTTGATCAATT
GCCTAATGTCGTCGAGTTGCCGGTCACCGCCGGTAATTCAATCACTGTTT
GTGGCGATGTCCATGGTCAGTATTATGATCTTGCCGATGGCATCTTCGAG
CGTAATGGACTCCCGAGCGCCAAGAATCCCTACTTGTTCAACGGTGATTT
TGTCGATCGCGGATCGTTTAGCGTAGAGGTTATCCTCACTCTTTTGGCTT
TCAAGGCTTGGTGTCCCGAAGCCATCCATCTTACGCGCGGTAATCATGAA
TCGCTCAATATGAATCGCATCTATGGCTTTGAAGGTGAAGTGCGAGTCAA
GTACACCGAGACCATATTCAACCTCTTTTCGGAGACTTTTCAGAGCCTAC
CTCTGGCTTACATTCTGGACGGAAGCAGCACGTCCGATGGTCGTAAAGCT
TTCGTCGTCCATGGTGGATTGTTCTCAAAAGATGGCGTCACCATTGCGGA
CATAAACGCCCTCAACCGTAAATGCGAACCGGATGCGGGACTTATGGCCG
AAATGTTGTGGAGCGATCCACAGGAAGAGAATGGATGGGGTCCCTCGAAA
AGGGGTATCGGTGTGGCGTTTGGTCCAGATGTCACGCACCGCTTCTTGGA
TCTTAATGGTCTGGATATCGTCGTCAGATCTCATGAAATGAAGGACGAAG
GTTTTGAAGTGTCAGCGAATGGCCGTCTTGTTACAATTTTCTCAGCTCCT
AACTACTGTGACCAAATGGGCAACCAGGTGATGAGCAGTTCAAATGATAG
TGAGTTTCTATCCTCCGCCCGTTTTGAAGTCCGCTTCAATTCGTGTACAA
AAGACTGTGGTATGAACGATTACTTTGCCAATAGTCTTGAGCTTATCGAC
GTACTGGACCCCGACGCTGCGAATAGGCTGATTGAAAAGTGCTTGGCCCG
TGGCAGAGGCCCGCTCAACGTTGGTACAGTAAGAAGCACCACAAGTATGT
TGCTTACGCTTGGCTCAAGAGCATCTGTCGGTACTAAACCATGA
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protein sequence of Ggra5897.t1

>Ggra5897.t1 ID=Ggra5897.t1|Name=Ggra5897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=548bp
MSADVFRAEELQQINQIKKEANDCFKNHRFHEAEKLYTRALNHALLLNVD
QNTRAVLFGNRAFTRLKLEQYGYAINDATSALSHDPNYIKAYYRRGSAYF
ALSRYKDAKRDYAIIAQRIPENKDTAAKLKECDKRIKEAAFAKAIEGDSL
RVHVCDTIDIASMQVPDSYDGPRIQPHGEITEKFVRDLIQCFRKQKRLHI
KYATMIVLAAKNIFDQLPNVVELPVTAGNSITVCGDVHGQYYDLADGIFE
RNGLPSAKNPYLFNGDFVDRGSFSVEVILTLLAFKAWCPEAIHLTRGNHE
SLNMNRIYGFEGEVRVKYTETIFNLFSETFQSLPLAYILDGSSTSDGRKA
FVVHGGLFSKDGVTIADINALNRKCEPDAGLMAEMLWSDPQEENGWGPSK
RGIGVAFGPDVTHRFLDLNGLDIVVRSHEMKDEGFEVSANGRLVTIFSAP
NYCDQMGNQVMSSSNDSEFLSSARFEVRFNSCTKDCGMNDYFANSLELID
VLDPDAANRLIEKCLARGRGPLNVGTVRSTTSMLLTLGSRASVGTKP*
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mRNA from alignment at tig00000068_pilon:449137..451015+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5897.t1 ID=Ggra5897.t1|Name=Ggra5897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1879bp|location=Sequence derived from alignment at tig00000068_pilon:449137..451015+ (Gracilaria gracilis GNS1m male)
ATGAGTGCTGACGTGTTTCGTGCAGAGGAGCTCCAACAGATCAATCAGAT
CAAGAAGGAGGCCAATGACTGCTTTAAGAACCATCGTTTCCATGAAGCAG
AGAAGCTTTACACCCGAGCGCTCAACCACGCTTTGCTCCTAAATGTAGAC
CAAAACACCCGTGCCGTCTTGTTCGGCAATCGCGCCTTTACTAGACTCAA
GCTCGAGCAGTATGGATACGCTATCAACGACGCCACCAGCGCTCTCTCAC
ACGATCCTAATTACATCAAGGCCTACTATCGACGCGGAAGTGCCTACTTT
GCACTCAGCAGGTACAAGGACGCCAAAAGAGACTATGCCATCATTGCCCA
GCGCATCCCGGAAAACAAGGACACCGCCGCCAAGCTCAAGGAATGTGACA
AACGAATCAAGGAAGCCGCCTTTGCAAAGGCCATTGAGGGCGATTCTCTA
CGCGTCCACGTCTGTGATACTATTGACATCGCCTCTATGCAAGTTCCTGA
CTCGTATGACGGGCCCCGAATACAACCGCACGGCGAGATCACTGAAAAGT
TTGTGCGCGATCTCATTCAGTGCTTCCGAAAGCAGAAGCGCTTGCACATC
AAGTATGCCACCATGATTGTGCTGGCTGCGAAGAACATCTTTGATCAATT
GCCTAATGTCGTCGAGTTGCCGGTCACCGCCGGTAATTCAATCACTGTTT
GTGGCGATGTCCATGGTCAGTATTATGATCTTGCCGATGGCATCTTCGAG
CGTAATGGACTCCCGAGCGCCAAGAATCCCTACTTGTTCAACGGTGATTT
TGTCGATCGCGGATCGTTTAGCGTAGAGGTTATCCTCACTCTTTTGGCTT
TCAAGGCTTGGTGTCCCGAAGCCATCCATCTTACGCGCGGTAATCATGAA
TCGCTCAATATGAATCGCATCTATGGCTTTGAAGGTGAAGTGCGAGTCAA
GTACACCGAGACCATATTCAACCTCTTTTCGGAGACTTTTCAGAGCCTAC
CTCTGGCTTACATTCTGGACGGAAGCAGCACGTCCGATGGTCGTAAAGCT
TTCGTCGTCCATGGTGGATTGTTCTCAAAAGATGGCGTCACCATTGCGGA
CATAAACGCCCTCAACCGTAAATGCGAACCGGATGCGGGACTTATGGCCG
AAATGTTGTGGAGCGATCCACAGGAAGAGAATGGATGGGGTCCCTCGAAA
AGGGGTATCGGTGTGGCGTTTGGTCCAGATGTCACGCACCGCTTCTTGGA
TCTTAATGGTCTGGATATCGTCGTCAGATCTCATGAAATGAAGGACGAAG
GTTTTGAAGTGTCAGCGAATGGCCGTCTTGTTACAATTTTCTCAGCTCCT
AACTACTGTGACCAAATGGGCAACCAGGGTGCGTACATCCGATTCAAGTC
TGACATGGAGCCTGCTTTCGTTCAATTTGGTGCTGTGCCTCACCCCTTTG
TTCCTCCGATGCAATACGCGTCCAAGCTGTTGATGGGATCTCAGTGATGA
GCAGTTCAAATGATAGTGAGTTTCTATCCTCCGCCCGTTTTGAAGTCCGC
TTCAATTCGTGTACAAAAGACTGTGGTATGAACGATTACTTTGCCAATAG
TCTTGAGCTTATGTAAGGCTTAATTGTTTTTCAAACTAGTTTTTCGACAG
GATGCTAGTGGTCTTCATTCAAGAGCCTCTTCATTCAAGAGCCTAACTCA
AATAACTGTCCCTAACAACCTGGTCAAACAGCGACGTACTGGACCCCGAC
GCTGCGAATAGGCTGATTGAAAAGTGCTTGGCCCGTGGCAGAGGCCCGCT
CAACGTTGGTACAGTAAGAAGCACCACAAGTATGTTGCTTACGCTTGGCT
CAAGAGCATCTGTCGGTACTAAACCATGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:449137..451015+

>Ggra5897.t1 ID=Ggra5897.t1|Name=Ggra5897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00000068_pilon:449137..451015+ (Gracilaria gracilis GNS1m male)
ATGAGTGCTGACGTGTTTCGTGCAGAGGAGCTCCAACAGATCAATCAGAT
CAAGAAGGAGGCCAATGACTGCTTTAAGAACCATCGTTTCCATGAAGCAG
AGAAGCTTTACACCCGAGCGCTCAACCACGCTTTGCTCCTAAATGTAGAC
CAAAACACCCGTGCCGTCTTGTTCGGCAATCGCGCCTTTACTAGACTCAA
GCTCGAGCAGTATGGATACGCTATCAACGACGCCACCAGCGCTCTCTCAC
ACGATCCTAATTACATCAAGGCCTACTATCGACGCGGAAGTGCCTACTTT
GCACTCAGCAGGTACAAGGACGCCAAAAGAGACTATGCCATCATTGCCCA
GCGCATCCCGGAAAACAAGGACACCGCCGCCAAGCTCAAGGAATGTGACA
AACGAATCAAGGAAGCCGCCTTTGCAAAGGCCATTGAGGGCGATTCTCTA
CGCGTCCACGTCTGTGATACTATTGACATCGCCTCTATGCAAGTTCCTGA
CTCGTATGACGGGCCCCGAATACAACCGCACGGCGAGATCACTGAAAAGT
TTGTGCGCGATCTCATTCAGTGCTTCCGAAAGCAGAAGCGCTTGCACATC
AAGTATGCCACCATGATTGTGCTGGCTGCGAAGAACATCTTTGATCAATT
GCCTAATGTCGTCGAGTTGCCGGTCACCGCCGGTAATTCAATCACTGTTT
GTGGCGATGTCCATGGTCAGTATTATGATCTTGCCGATGGCATCTTCGAG
CGTAATGGACTCCCGAGCGCCAAGAATCCCTACTTGTTCAACGGTGATTT
TGTCGATCGCGGATCGTTTAGCGTAGAGGTTATCCTCACTCTTTTGGCTT
TCAAGGCTTGGTGTCCCGAAGCCATCCATCTTACGCGCGGTAATCATGAA
TCGCTCAATATGAATCGCATCTATGGCTTTGAAGGTGAAGTGCGAGTCAA
GTACACCGAGACCATATTCAACCTCTTTTCGGAGACTTTTCAGAGCCTAC
CTCTGGCTTACATTCTGGACGGAAGCAGCACGTCCGATGGTCGTAAAGCT
TTCGTCGTCCATGGTGGATTGTTCTCAAAAGATGGCGTCACCATTGCGGA
CATAAACGCCCTCAACCGTAAATGCGAACCGGATGCGGGACTTATGGCCG
AAATGTTGTGGAGCGATCCACAGGAAGAGAATGGATGGGGTCCCTCGAAA
AGGGGTATCGGTGTGGCGTTTGGTCCAGATGTCACGCACCGCTTCTTGGA
TCTTAATGGTCTGGATATCGTCGTCAGATCTCATGAAATGAAGGACGAAG
GTTTTGAAGTGTCAGCGAATGGCCGTCTTGTTACAATTTTCTCAGCTCCT
AACTACTGTGACCAAATGGGCAACCAGGTGATGAGCAGTTCAAATGATAG
TGAGTTTCTATCCTCCGCCCGTTTTGAAGTCCGCTTCAATTCGTGTACAA
AAGACTGTGGTATGAACGATTACTTTGCCAATAGTCTTGAGCTTATCGAC
GTACTGGACCCCGACGCTGCGAATAGGCTGATTGAAAAGTGCTTGGCCCG
TGGCAGAGGCCCGCTCAACGTTGGTACAGTAAGAAGCACCACAAGTATGT
TGCTTACGCTTGGCTCAAGAGCATCTGTCGGTACTAAACCATGA
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