Ggra5954.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5954.t1
Unique NameGgra5954.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length373
Homology
BLAST of Ggra5954.t1 vs. uniprot
Match: A0A2V3J5A0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 207 bits (527), Expect = 4.040e-60
Identity = 131/364 (35.99%), Postives = 199/364 (54.67%), Query Frame = 0
Query:    1 MVLIQLKSQYVDLIITLLSGAAELCLLKAAFDLNRYLECNALKRGKQIKVRRHLRRRTNIIVLTTTFFIIFGIIWSVFSNPGPNYLDRPRPCASVD---RYDFIPNTVSSLQTGTVLLNCLRTNKNQTYQHAGNASLEGGIIQCSESALYMFNGDDLIHVEIGNRTRT------------CIDEVCVVVEIES-------RVVMFSGMILVSEIDQLIAQSIDIPFLVTTVLFDIEKDQEVV--LGRRALDAFSANVNDSLELRQRVFTGSRDEGSCPFPVSVDFTEVPIVLICLIGATWIVSLFALIATLFVRRHIFYDMSDPLHWAQRTYRYIDEPMSEDPVIVCVHGDGERIMYVTGSCSE 340
            MVLI LKSQYV LI T++S   EL LLKA   +N Y EC+AL++G  + V RH  R T ++++TT  F    ++ S +S+P      + +PC +V+   R    P T  SL+   ++L+C++TN++  +   GN S+E   ++C+ESA  MF  +  + + IG                 C D  CVV++  S         V FS +    E+  L   +  I FL TT+ F  + + E++     R L A+  N+ND  ELR+ +F GS +  +C F  + + TEVP  +I  +   W++SL A   TL + R +FYD+S+P+HWA+RTYR  DEP+  DP +  V  +G  +MYV+GS  E
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGT--SLEEIGIVLSCVKTNESNIFLRVGNYSMETRKVECAESATLMFTLEPHVSLPIGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTI-FSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGS-ERDTCQFQRTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVSGSNPE 360          
BLAST of Ggra5954.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 207 bits (526), Expect = 1.610e-59
Identity = 144/378 (38.10%), Postives = 197/378 (52.12%), Query Frame = 0
Query:    1 MVLIQLKSQYVDLIITLLSGAAELCLLKAAFDLNRYLECNALKRGKQIKVRRHLRRRTNIIVLTTTFFIIFGIIWSVFSNPGPNYLDRPRPCASVDRYDFIPN-TVSSLQTGTVLLNCLRTNKNQTYQHAGNASLEGGI---IQCSESALYMFNGDDLIHVEIGNRTRT----------CI------------DEVCVVVE------IESRVVMFSGMILVSEIDQLIAQSIDIPFLVTTVLFDIEKDQEVVLGRRALDAFSANVNDSLELRQRVFTGSRDEGSCPFPV-SVDFTEVPIVLICLIGATWIVSLFALIATLFVRRHIFYDMSDPLHWAQRTYRYIDEPMSEDPVIVCVHGDGERIMYVTGSCSEEFNFL 345
            MV I LKSQ+V LI+TL+SG AEL L  A    N+Y EC AL++G+Q+ VR H  R   + VL    FI   +I S FS+P      R   C +VDR D     T  +     +L+ C+   K+   Q AGN SL       ++C + ALY +  +D +   + N TRT          CI            + +C  V       I    V  S  +  SE+  L+ Q + IPFL T+V ++          RR L A+  +V D +E+R+RVF G  +   C F     D T VP+ L+  I A WI+S     +TL +RR IFYDMSDPLHWAQRTYR+IDEP+  +PV+  V+  GER+MYV+GS S + + L
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYN-TSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGI-ERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVSGSASNDDDLL 376          
BLAST of Ggra5954.t1 vs. uniprot
Match: A0A2V3IMC1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 172 bits (435), Expect = 1.090e-46
Identity = 121/350 (34.57%), Postives = 181/350 (51.71%), Query Frame = 0
Query:    1 MVLIQLKSQYVDLIITLLSGAAELCLLKAAFDLNRYLECNALKRGKQIKVRRHLRRRTNIIVLTTTFFIIFGIIWSVFSNPGPNYLDRPRPCASVDRYDFIPNTVSSLQTGTVLLN-CLRTNKNQTYQHAGNASLEGGIIQCSESALYMFN---GDDLIHVEIGNRTRTCIDEVCVVVEIESRVVMFSGMILVSEIDQLIAQSID--IPFLVTTVLFDIEKDQEVVLGRRALDAFSANVNDSLELRQRVFTGSRDEGSCPFPVSV-DFTEVPIVLICLIGATWIVSLFALIATLFVRRHIFYDMSDPLHWAQRTYRYIDEPMSEDPVIVCVHGDGERIMYVT--GSCSEE 341
            MV I LK+QYV LIIT++S   E+  + A   +N   EC  LK+ KQ++VR +  R   I +++   F+   II S FS+P    L +  PC SVD    +       +    +   C     N  Y   GN SL  G ++CS+ A Y ++     +   + +     +C  E CV V  +     FSG +L   + +L + ++D  + FL T +LFD  +   V  GR A+DAF   VND  ELR+RVF GS  + +CPF   V D T VP  L+  +   WIV+L   +  L +RR +F+D+ +PLHWA +  + +DE +  DPV+ C   D    +YV+  G+ +EE
Sbjct:    1 MVTIALKAQYVSLIITIISFICEVIFIAALQTVNSIRECQLLKQKKQLRVRNYRHRAKIIALISALLFLGLEIIVSFFSDPVQLELFQSEPCVSVDNVLRLQGPQGEFREADFIEGKCQTLRGNFNYVRVGNVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGETCVFVFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGR-AVDAFLEQVNDPFELRRRVFLGSAKK-NCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCATEDEALALYVSERGNKAEE 348          
BLAST of Ggra5954.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 164 bits (416), Expect = 1.130e-43
Identity = 119/351 (33.90%), Postives = 173/351 (49.29%), Query Frame = 0
Query:    1 MVLIQLKSQYVDLIITLLSGAAELCLLKAAFDLNRYLECNALKRGKQIKVRRHLRRRTNIIVLTTTFFIIFGIIWSVFSNPGPNYLDRPRPCASVDRYDFIPNTVS-SLQTGTVLLNCLRTNKNQTYQHAGNASL-----EGG------IIQCSES-ALYMFNGDDLIHVEIGNRTRT-CIDEVCVVVEIESRVVMFSGMILVSEIDQLIAQSIDIPFLVTTVLFDIEKDQEVVLGRRALDAFSANVNDSLELRQRVFTGSRDEGSCPFPVSVDFTEVPIVLICLIGATWIVSLFALIATLFVRRHIFYDMSDPLHWAQRTYRYIDEPMSEDPVIVCVHGDGERIMYVTGS 337
            MVLI LKSQY  LI+T++SG AEL LL A    N+YLEC AL+ G ++ VR H  R   + V  T  F+   +  S +S+P        + C S+D        ++ S QT  V + C+  N    +QHAGN S       GG      + +C +   LY  N +      + +     C+   CV V      V F+  +   ++ +++ +SI +P   TT+ +++    E     RA+D  S  V D   LR+ VF GS     C F    D T V    I  I   W +S+ A + +  +RR IFYDMSDPLHWAQ+T R  D   +++PV+  V+ +G R + VT S
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVVGCVGTSCVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVT-GLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAIT-QCNFKTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRS 349          
BLAST of Ggra5954.t1 vs. uniprot
Match: A0A2V3J5B4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5B4_9FLOR)

HSP 1 Score: 103 bits (256), Expect = 5.540e-21
Identity = 91/329 (27.66%), Postives = 150/329 (45.59%), Query Frame = 0
Query:    4 IQLKSQYVDLIITLLSGAAELCLLKAAFDLNRYLECNALKRGKQIKVRRHLRRRTNIIVLTTTFFIIFGIIWSVFSNPGPNYLDRPRPCA-SVDRYDFIPNTVSSLQTGTVL-------LNCLRTNKNQTYQHAGNASLEGGIIQCSESALYMFNGDD---LIHVEIGNRTRTCIDE-----VCVVVEIESRVVMFSGMILVSEIDQLIAQSIDIPFLVTTVLFDIEKDQEVVLGRRALDAFSANVNDSLELRQRVFT-GSRDEGSCPFPVSV-DFTEVPIVLICLIGATWIVSLFALIATLFVRRHIFYDMSDPLHWAQRT-YRYIDE 313
            I L+     L+IT+ S   EL  L A F  N   EC +L+ G ++ V RH  R   + +L T  F+   +I S  S+  P       PC  SV + +F  N  SS    TV        ++C+     + +   GN SL+   +QC    ++ +   +   L     G  T    DE      C  V ++++    + +++     +     ID  F  T +   I +DQ   + ++ L  ++  V+D  E+R+R+ T G R +  C F     +FTE+ +    L    W + +   +  LFVRR +FYDMS+ LHWA++T YR +++
Sbjct:    5 IPLRPSVTSLVITITSLVVELACLSALFIFNAVCECRSLRNGNRVSVARHRLRIKILTILATLTFVGLEVITSANSHTKPVTESTLSPCIRSVTKQNF-DNINSSFDDQTVTNGRDNIGISCVNVGGGEVFVKNGNYSLDTLDVQCGAKPIFSYVSAEKEFLPPASPGVITHCEQDEFLNMGTCASVSLQNK----TRLLISERFSEESNFEIDAEFRPTQLFMTIGEDQLESIAKQLLTLYTIGVSDEAEVRRRILTDGIRSQ--CSFDAETHEFTEIKLWAFILTVIIWAMCITFFLVMLFVRRGVFYDMSNALHWAEKTVYRQLED 326          
BLAST of Ggra5954.t1 vs. uniprot
Match: A0A2V3INJ9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INJ9_9FLOR)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-8
Identity = 80/301 (26.58%), Postives = 117/301 (38.87%), Query Frame = 0
Query:   48 IKVRRHLRRRTNIIVLTTTFFIIFGIIWSVFSNPGPNYLDRPRPCASVDRYDFIPNTVSSLQTGTVLLNCLRTNKNQTYQHAGNASLEGGIIQCSESALYMFN-GDDLIHVEIGNRTRTCIDEVCVVVEIESRVVMFSG----MILVSEIDQLI----------AQSIDI---PFLVTTVLFDIEKDQEVVLGRRALDAFSANVNDSLELRQRVFTGSRDEGSCPFPVSVDFTEVPIVLICLIGATWIVSLFALIATLFVRRHI------FYDMSDPLHWAQRTYRYIDEPMSEDPVIVCV 324
            I V+R  RRR  +      FF+I  I+     +P   +  R  PC SVD          S Q  +    C   N+ +  +H    S+  G   C +  L+ F      +   + +  R+ ID     V   SR V        ++L +E D  I          AQ  DI   PF  T + +   ++Q   LG RA +     V   +  R RVF+G  +E      V    T++   +   +   W     A   T  V R +      F+DM DP+HWA+RTYR     +  D VI  V
Sbjct:   15 ISVKRSKRRRRFLQAAALVFFVILEILLVFSVHPYSAF--RSVPCVSVDTSLRFSVGNHSPQAESAATGCRTLNRGRFTEHNATFSMSTGRTACGKKPLFRFYLNSTTLFTNLIDLQRSAIDTENHTVACASRPVSTRDNKCLLVLRAENDLFISDLLYTFPPAAQVFDIEQLPFSATRLPYKPSQEQAEFLGARAANVLLEGVRKPVLFRHRVFSGFSNETCRERDVDPLHTQIHPAMFTALVLIWC----ACFLTYTVLRCVKPLGTPFFDMRDPMHWAERTYRPSRVILERDAVIQAV 309          
The following BLAST results are available for this feature:
BLAST of Ggra5954.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J5A04.040e-6035.99Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT051.610e-5938.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMC11.090e-4634.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C21.130e-4333.90Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5B45.540e-2127.66Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INJ91.830e-826.58Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 13..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 266..289
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..265
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 290..372
NoneNo IPR availableTMHMMTMhelixcoord: 59..78
NoneNo IPR availableTMHMMTMhelixcoord: 265..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:708817..709935 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5954.t1Ggra5954.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 708817..709935 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5954.t1 ID=Ggra5954.t1|Name=Ggra5954.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=373bp
MVLIQLKSQYVDLIITLLSGAAELCLLKAAFDLNRYLECNALKRGKQIKV
RRHLRRRTNIIVLTTTFFIIFGIIWSVFSNPGPNYLDRPRPCASVDRYDF
IPNTVSSLQTGTVLLNCLRTNKNQTYQHAGNASLEGGIIQCSESALYMFN
GDDLIHVEIGNRTRTCIDEVCVVVEIESRVVMFSGMILVSEIDQLIAQSI
DIPFLVTTVLFDIEKDQEVVLGRRALDAFSANVNDSLELRQRVFTGSRDE
GSCPFPVSVDFTEVPIVLICLIGATWIVSLFALIATLFVRRHIFYDMSDP
LHWAQRTYRYIDEPMSEDPVIVCVHGDGERIMYVTGSCSEEFNFLKSRKP
EPKRHWLGAKKESYKGMPTISD*
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