Ggra5921.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5921.t1
Unique NameGgra5921.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Homology
BLAST of Ggra5921.t1 vs. uniprot
Match: A0A2V3IVV6 (Translocon-associated protein subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVV6_9FLOR)

HSP 1 Score: 236 bits (603), Expect = 1.310e-76
Identity = 118/170 (69.41%), Postives = 138/170 (81.18%), Query Frame = 0
Query:   24 AAEHAPPQRALLALHRDMDGDLVASRNVTVTYHVHNVGLGAAQQVALKDLSFPASRFLTFDSVARKSWPSLAPGESHTHQLIVAPLRAGELFVSPASVSYKDDHKQRVTKLAIDDTLRVEDLISYKRRTDTHTLEWALYAAAFFLLCVAPYSFSVFYERTLHHSPAKKKN 193
            AAEH+ P RALLALHR+MDGDLVASRNVTVTYH+HNVGL  A+ VALKDLSFPASRFLTF +  R++WP ++P +S   QL+V+PL+AGEL V+PASVSY DD  QR T+LA DDTL+VEDL SYKRRTD H LEW+LYA +F LLCVAPY  SV  ER +  S +KKKN
Sbjct:   23 AAEHSRPVRALLALHREMDGDLVASRNVTVTYHIHNVGLTTAENVALKDLSFPASRFLTFGAKPRRTWPLISPADSRVLQLVVSPLKAGELIVAPASVSYTDDGAQRTTRLATDDTLKVEDLTSYKRRTDRHGLEWSLYALSFVLLCVAPYVISVVLERGVSQSSSKKKN 192          
BLAST of Ggra5921.t1 vs. uniprot
Match: A0A7S1TFC3 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFC3_9RHOD)

HSP 1 Score: 76.3 bits (186), Expect = 9.310e-14
Identity = 43/148 (29.05%), Postives = 72/148 (48.65%), Query Frame = 0
Query:   45 LVASRNVTVTYHVHNVGLGAAQQVALKDLSFPASRFLTFDSVARKSWPSLAPGESHTHQLIVAPLRAGELFVSPASVSYKDDHKQRVTKLAIDDTLRVEDLISYKRRTDTHTLEWALYAAAFFLLCVAPYSFSVFYERTLHHSPAKKK 192
            +V  +   V Y + N+G G A +V + + SFPA  F          +  +A G + ++ + +     G L + PA V Y D +KQR      +  + +E   +Y +RT+ H  +WA+ AAA F++  AP+S  +     L  +  KKK
Sbjct:   56 VVQGKEFAVAYEIRNLGNGPATEVTVTEESFPADSFRIVTGKTATVFDEIAGGMNESYVVRLRAKVTGTLPLPPAIVEYMDGYKQRTCSSTTERKIEIESAAAYLKRTNLHLTDWAMVAAASFVITAAPFSVFLSGRAKLLAASGKKK 203          
BLAST of Ggra5921.t1 vs. uniprot
Match: A0A6T6M0W7 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6M0W7_9RHOD)

HSP 1 Score: 73.2 bits (178), Expect = 1.800e-12
Identity = 51/165 (30.91%), Postives = 76/165 (46.06%), Query Frame = 0
Query:   26 EHAPPQRALLALHRDMDGDLVASR-NVTVTYHVHNVGLGAAQQVALKDLSFPASRFLTFDSVARKSWPSLAPGESHTHQLIVAPLRAGELFVSPASVSYKDD------------HKQRVTKLAIDDTLRVEDLISYKRRTDTHTLEWALYAAAFFLLCVAPYSFS 177
            E      + LA  R+ D +LV    NVTV+Y ++N+G  +A +V L+D+   +  F   D V   S+  + PG S +  +      AG    SP S  YK                +RV  +A    L VED+ S+K+RTD H L+W  ++    L    PY+ S
Sbjct:   43 EEVKSHGSFLAGVREFDSNLVVEMGNVTVSYTIYNIGDQSAFEVELEDIMLTSEDFEAVDGVTSISFDEITPGSSVSRSVTFIAKSAGYYGDSPKSSVYKPSAAKISYATERTSDTKRVHYIASKGILVVEDVESFKKRTDKHILDWIAFSTLSLLFTAVPYAIS 207          
The following BLAST results are available for this feature:
BLAST of Ggra5921.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IVV61.310e-7669.41Translocon-associated protein subunit beta n=1 Tax... [more]
A0A7S1TFC39.310e-1429.05Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6T6M0W71.800e-1230.91Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05753TRAP_betacoord: 19..182
e-value: 1.1E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR12861TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNITcoord: 9..173
NoneNo IPR availablePANTHERPTHR12861:SF3TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETAcoord: 9..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 181..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 159..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 159..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:541643..542311 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5921.t1Ggra5921.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 541643..542311 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5921.t1 ID=Ggra5921.t1|Name=Ggra5921.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MMAPCPPLALFAAVWAALLLAAAAAEHAPPQRALLALHRDMDGDLVASRN
VTVTYHVHNVGLGAAQQVALKDLSFPASRFLTFDSVARKSWPSLAPGESH
THQLIVAPLRAGELFVSPASVSYKDDHKQRVTKLAIDDTLRVEDLISYKR
RTDTHTLEWALYAAAFFLLCVAPYSFSVFYERTLHHSPAKKKN*
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