Ggra5921.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5921.t1
Unique NameGgra5921.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:541643..542311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002740523.1
Preferred nameSSR2
PFAMsTRAP_beta
Max annot lvl33208|Metazoa
KEGG koko:K13250
KEGG Pathwayko04141,map04141
KEGG ModuleM00402
GOsGO:0003674,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005786,GO:0005789,GO:0006605,GO:0006612,GO:0006613,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031984,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0042175,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048500,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0090150,GO:0098827,GO:1990904
Evalue1.26e-12
EggNOG OGsKOG3317@1|root,KOG3317@2759|Eukaryota,38HIF@33154|Opisthokonta,3BCMD@33208|Metazoa,3CU8J@33213|Bilateria
Descriptioncotranslational protein targeting to membrane
COG categoryU
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5921Ggra5921Gracilaria gracilis GNS1m malegenetig00000068_pilon 541643..542311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5921.t1Ggra5921.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 541643..542311 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5921.t1.stop1Ggra5921.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 541643..541645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5921.t1.CDS1Ggra5921.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 541643..542036 -
Ggra5921.t1.CDS2Ggra5921.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000068_pilon 542124..542311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5921.t1.exon1Ggra5921.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 541643..542036 -
Ggra5921.t1.exon2Ggra5921.t1.exon2Gracilaria gracilis GNS1m maleexontig00000068_pilon 542124..542311 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5921.t1.intron1Ggra5921.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000068_pilon 542037..542123 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5921.t1.start1Ggra5921.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 542309..542311 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5921.t1 ID=Ggra5921.t1|Name=Ggra5921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MMAPCPPLALFAAVWAALLLAAAAAEHAPPQRALLALHRDMDGDLVASRN
VTVTYHVHNVGLGAAQQVALKDLSFPASRFLTFDSVARKSWPSLAPGESH
THQLIVAPLRAGELFVSPASVSYKDDHKQRVTKLAIDDTLRVEDLISYKR
RTDTHTLEWALYAAAFFLLCVAPYSFSVFYERTLHHSPAKKKN*
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spliced messenger RNA

>Ggra5921.t1 ID=Ggra5921.t1|Name=Ggra5921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000068_pilon:541643..542311- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGCCTTGTCCGCCACTTGCGCTGTTTGCGGCCGTTTGGGCCGC
GCTGCTGCTCGCTGCTGCTGCTGCCGAACATGCGCCGCCGCAGCGCGCGT
TGCTGGCGCTGCATCGCGATATGGATGGCGATCTTGTCGCGTCGCGAAAT
GTTACCGTCACTTACCACGTCCACAACGTCGGCTTGGGCGCTGCTCAACA
GGTTGCGCTAAAGGATCTATCGTTCCCGGCGTCGCGCTTTCTCACCTTCG
ACTCCGTCGCGAGGAAGAGCTGGCCTTCCCTTGCGCCGGGCGAGTCGCAT
ACTCACCAGTTGATTGTTGCGCCCCTGCGAGCCGGGGAGCTCTTCGTATC
GCCAGCCAGTGTGTCGTACAAAGACGATCACAAGCAACGCGTTACCAAGC
TGGCCATCGACGATACACTGCGAGTTGAGGATCTTATCTCCTACAAGCGT
CGCACCGATACACACACCCTCGAATGGGCTCTGTATGCAGCTGCTTTCTT
CCTGCTTTGTGTTGCACCGTACTCCTTCAGCGTCTTCTACGAACGCACGC
TTCATCACTCCCCGGCTAAGAAAAAGAACTAA
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protein sequence of Ggra5921.t1

>Ggra5921.t1 ID=Ggra5921.t1|Name=Ggra5921.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MMAPCPPLALFAAVWAALLLAAAAAEHAPPQRALLALHRDMDGDLVASRN
VTVTYHVHNVGLGAAQQVALKDLSFPASRFLTFDSVARKSWPSLAPGESH
THQLIVAPLRAGELFVSPASVSYKDDHKQRVTKLAIDDTLRVEDLISYKR
RTDTHTLEWALYAAAFFLLCVAPYSFSVFYERTLHHSPAKKKN*
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mRNA from alignment at tig00000068_pilon:541643..542311-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5921.t1 ID=Ggra5921.t1|Name=Ggra5921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000068_pilon:541643..542311- (Gracilaria gracilis GNS1m male)
ATGATGGCGCCTTGTCCGCCACTTGCGCTGTTTGCGGCCGTTTGGGCCGC
GCTGCTGCTCGCTGCTGCTGCTGCCGAACATGCGCCGCCGCAGCGCGCGT
TGCTGGCGCTGCATCGCGATATGGATGGCGATCTTGTCGCGTCGCGAAAT
GTTACCGTCACTTACCACGTCCACAACGTCGGCTTGGGGTATGTCTTCCT
CCTTCACCTCGTCCAGTATGCATTCCGTCGCTCACCCTACGTCCGTTTCT
CTCTCTGTGTCCCACTGCTGCGTAGCGCTGCTCAACAGGTTGCGCTAAAG
GATCTATCGTTCCCGGCGTCGCGCTTTCTCACCTTCGACTCCGTCGCGAG
GAAGAGCTGGCCTTCCCTTGCGCCGGGCGAGTCGCATACTCACCAGTTGA
TTGTTGCGCCCCTGCGAGCCGGGGAGCTCTTCGTATCGCCAGCCAGTGTG
TCGTACAAAGACGATCACAAGCAACGCGTTACCAAGCTGGCCATCGACGA
TACACTGCGAGTTGAGGATCTTATCTCCTACAAGCGTCGCACCGATACAC
ACACCCTCGAATGGGCTCTGTATGCAGCTGCTTTCTTCCTGCTTTGTGTT
GCACCGTACTCCTTCAGCGTCTTCTACGAACGCACGCTTCATCACTCCCC
GGCTAAGAAAAAGAACTAA
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Coding sequence (CDS) from alignment at tig00000068_pilon:541643..542311-

>Ggra5921.t1 ID=Ggra5921.t1|Name=Ggra5921.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000068_pilon:541643..542311- (Gracilaria gracilis GNS1m male)
ATGATGGCGCCTTGTCCGCCACTTGCGCTGTTTGCGGCCGTTTGGGCCGC
GCTGCTGCTCGCTGCTGCTGCTGCCGAACATGCGCCGCCGCAGCGCGCGT
TGCTGGCGCTGCATCGCGATATGGATGGCGATCTTGTCGCGTCGCGAAAT
GTTACCGTCACTTACCACGTCCACAACGTCGGCTTGGGCGCTGCTCAACA
GGTTGCGCTAAAGGATCTATCGTTCCCGGCGTCGCGCTTTCTCACCTTCG
ACTCCGTCGCGAGGAAGAGCTGGCCTTCCCTTGCGCCGGGCGAGTCGCAT
ACTCACCAGTTGATTGTTGCGCCCCTGCGAGCCGGGGAGCTCTTCGTATC
GCCAGCCAGTGTGTCGTACAAAGACGATCACAAGCAACGCGTTACCAAGC
TGGCCATCGACGATACACTGCGAGTTGAGGATCTTATCTCCTACAAGCGT
CGCACCGATACACACACCCTCGAATGGGCTCTGTATGCAGCTGCTTTCTT
CCTGCTTTGTGTTGCACCGTACTCCTTCAGCGTCTTCTACGAACGCACGC
TTCATCACTCCCCGGCTAAGAAAAAGAACTAA
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