Ggra5844.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5844.t1
Unique NameGgra5844.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:119111..120541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5844Ggra5844Gracilaria gracilis GNS1m malegenetig00000068_pilon 119111..120541 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5844.t1.stop1Ggra5844.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 119111..119113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5844.t1.CDS1Ggra5844.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 119111..120541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5844.t1.exon1Ggra5844.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 119111..120541 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5844.t1.start1Ggra5844.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 120539..120541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5844.t1Ggra5844.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 119111..120541 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5844.t1 ID=Ggra5844.t1|Name=Ggra5844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp
MGKKKPGQGKKKVVLSLAEFTQDVPKAGVDPDIASLPTAPKAPEEWEAEG
GRPEYNSRGYKERTAHRDRGYDADADFDDRDWTRKGPLEENDGPGFGAGP
ERDWGDIRRGPLDSEDAAAPERNWDGMRRGPVESSFESKHVERDWGARKG
PIEAEAPASRTISDDQWGSARQGPIEAEFRQQKEEPNWNVRRPIDAGGAS
STAEADWSARKGPVEAEFAAETQERDWTARKGPVEADTEKSQPEGDWAGV
RRRPVESTFPRQQPEVDWSARKGPIEPEVEKTRKAIRDIDFSDRRGAKLE
ELKKAEDVGKLPTEKESSMSRENWRRDTQGVTERRSRQRTHMETSPPRQD
TTHNVRDWGAARERSHPIEAKMGSPQRAASREGNASQPGSEEVANNELET
HAPQDETESDWTTVRSSQRRTPGANRRHSGRGFGRRGPRTSIRDNKGERE
SRSEFSAREKESHSTDRPLTSTVTDE*
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spliced messenger RNA

>Ggra5844.t1 ID=Ggra5844.t1|Name=Ggra5844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000068_pilon:119111..120541- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAGAAGAAGCCCGGACAGGGGAAGAAGAAGGTCGTGCTTTCGCT
CGCAGAGTTTACTCAAGATGTGCCAAAAGCCGGAGTGGACCCGGACATTG
CGTCACTTCCTACGGCTCCCAAGGCCCCCGAGGAATGGGAAGCGGAAGGG
GGCCGCCCTGAATACAACTCGCGCGGTTACAAAGAGAGGACAGCTCACAG
AGACCGCGGTTACGACGCCGACGCCGACTTTGATGACCGCGACTGGACGC
GAAAGGGACCTCTAGAAGAGAATGATGGTCCCGGCTTCGGCGCTGGTCCC
GAACGAGACTGGGGTGATATACGTCGTGGTCCTCTGGATTCGGAAGACGC
TGCTGCTCCGGAACGCAACTGGGATGGCATGCGAAGAGGTCCTGTTGAGT
CCTCGTTTGAATCCAAACATGTGGAGCGTGATTGGGGCGCGCGAAAGGGT
CCCATCGAAGCCGAGGCCCCGGCATCGCGAACCATTTCCGATGATCAGTG
GGGTAGTGCTCGACAAGGACCTATTGAAGCAGAGTTTCGGCAGCAAAAGG
AAGAGCCAAACTGGAATGTACGTCGCCCGATTGATGCAGGTGGCGCATCA
TCCACAGCAGAAGCAGATTGGTCGGCTCGCAAGGGACCAGTTGAAGCTGA
ATTTGCTGCTGAGACACAGGAGCGAGACTGGACTGCTAGGAAGGGTCCAG
TCGAGGCTGATACGGAAAAGAGTCAACCTGAAGGGGACTGGGCAGGTGTC
CGAAGACGCCCGGTGGAGTCTACGTTTCCGCGCCAACAGCCAGAGGTGGA
TTGGTCCGCCAGAAAGGGGCCGATTGAACCTGAAGTGGAGAAAACCCGGA
AAGCTATCCGTGATATCGACTTTTCTGACAGACGAGGAGCGAAGTTGGAA
GAACTGAAGAAAGCTGAAGACGTAGGGAAGCTCCCAACTGAGAAGGAATC
GTCAATGTCTCGGGAAAATTGGCGCCGAGATACCCAGGGTGTTACCGAAA
GGAGAAGTCGACAGCGTACCCACATGGAAACGTCTCCGCCAAGGCAAGAC
ACCACCCACAACGTTAGGGACTGGGGAGCTGCAAGAGAACGATCTCATCC
AATCGAGGCGAAGATGGGCTCTCCACAAAGAGCGGCCTCACGCGAAGGCA
ACGCCAGTCAGCCCGGCTCTGAGGAAGTTGCGAATAATGAATTAGAGACG
CACGCCCCGCAAGATGAGACTGAAAGCGATTGGACTACAGTTCGTTCAAG
TCAACGACGCACTCCGGGAGCTAATCGTCGCCATTCGGGCAGAGGTTTCG
GTCGAAGAGGTCCCCGCACCTCGATAAGGGATAATAAAGGTGAAAGAGAG
TCGCGCAGCGAATTTTCGGCGAGGGAGAAGGAGAGTCACAGCACCGACAG
ACCTCTGACTTCCACAGTTACAGATGAATAA
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protein sequence of Ggra5844.t1

>Ggra5844.t1 ID=Ggra5844.t1|Name=Ggra5844.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=477bp
MGKKKPGQGKKKVVLSLAEFTQDVPKAGVDPDIASLPTAPKAPEEWEAEG
GRPEYNSRGYKERTAHRDRGYDADADFDDRDWTRKGPLEENDGPGFGAGP
ERDWGDIRRGPLDSEDAAAPERNWDGMRRGPVESSFESKHVERDWGARKG
PIEAEAPASRTISDDQWGSARQGPIEAEFRQQKEEPNWNVRRPIDAGGAS
STAEADWSARKGPVEAEFAAETQERDWTARKGPVEADTEKSQPEGDWAGV
RRRPVESTFPRQQPEVDWSARKGPIEPEVEKTRKAIRDIDFSDRRGAKLE
ELKKAEDVGKLPTEKESSMSRENWRRDTQGVTERRSRQRTHMETSPPRQD
TTHNVRDWGAARERSHPIEAKMGSPQRAASREGNASQPGSEEVANNELET
HAPQDETESDWTTVRSSQRRTPGANRRHSGRGFGRRGPRTSIRDNKGERE
SRSEFSAREKESHSTDRPLTSTVTDE*
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mRNA from alignment at tig00000068_pilon:119111..120541-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5844.t1 ID=Ggra5844.t1|Name=Ggra5844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000068_pilon:119111..120541- (Gracilaria gracilis GNS1m male)
ATGGGTAAGAAGAAGCCCGGACAGGGGAAGAAGAAGGTCGTGCTTTCGCT
CGCAGAGTTTACTCAAGATGTGCCAAAAGCCGGAGTGGACCCGGACATTG
CGTCACTTCCTACGGCTCCCAAGGCCCCCGAGGAATGGGAAGCGGAAGGG
GGCCGCCCTGAATACAACTCGCGCGGTTACAAAGAGAGGACAGCTCACAG
AGACCGCGGTTACGACGCCGACGCCGACTTTGATGACCGCGACTGGACGC
GAAAGGGACCTCTAGAAGAGAATGATGGTCCCGGCTTCGGCGCTGGTCCC
GAACGAGACTGGGGTGATATACGTCGTGGTCCTCTGGATTCGGAAGACGC
TGCTGCTCCGGAACGCAACTGGGATGGCATGCGAAGAGGTCCTGTTGAGT
CCTCGTTTGAATCCAAACATGTGGAGCGTGATTGGGGCGCGCGAAAGGGT
CCCATCGAAGCCGAGGCCCCGGCATCGCGAACCATTTCCGATGATCAGTG
GGGTAGTGCTCGACAAGGACCTATTGAAGCAGAGTTTCGGCAGCAAAAGG
AAGAGCCAAACTGGAATGTACGTCGCCCGATTGATGCAGGTGGCGCATCA
TCCACAGCAGAAGCAGATTGGTCGGCTCGCAAGGGACCAGTTGAAGCTGA
ATTTGCTGCTGAGACACAGGAGCGAGACTGGACTGCTAGGAAGGGTCCAG
TCGAGGCTGATACGGAAAAGAGTCAACCTGAAGGGGACTGGGCAGGTGTC
CGAAGACGCCCGGTGGAGTCTACGTTTCCGCGCCAACAGCCAGAGGTGGA
TTGGTCCGCCAGAAAGGGGCCGATTGAACCTGAAGTGGAGAAAACCCGGA
AAGCTATCCGTGATATCGACTTTTCTGACAGACGAGGAGCGAAGTTGGAA
GAACTGAAGAAAGCTGAAGACGTAGGGAAGCTCCCAACTGAGAAGGAATC
GTCAATGTCTCGGGAAAATTGGCGCCGAGATACCCAGGGTGTTACCGAAA
GGAGAAGTCGACAGCGTACCCACATGGAAACGTCTCCGCCAAGGCAAGAC
ACCACCCACAACGTTAGGGACTGGGGAGCTGCAAGAGAACGATCTCATCC
AATCGAGGCGAAGATGGGCTCTCCACAAAGAGCGGCCTCACGCGAAGGCA
ACGCCAGTCAGCCCGGCTCTGAGGAAGTTGCGAATAATGAATTAGAGACG
CACGCCCCGCAAGATGAGACTGAAAGCGATTGGACTACAGTTCGTTCAAG
TCAACGACGCACTCCGGGAGCTAATCGTCGCCATTCGGGCAGAGGTTTCG
GTCGAAGAGGTCCCCGCACCTCGATAAGGGATAATAAAGGTGAAAGAGAG
TCGCGCAGCGAATTTTCGGCGAGGGAGAAGGAGAGTCACAGCACCGACAG
ACCTCTGACTTCCACAGTTACAGATGAATAA
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Coding sequence (CDS) from alignment at tig00000068_pilon:119111..120541-

>Ggra5844.t1 ID=Ggra5844.t1|Name=Ggra5844.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00000068_pilon:119111..120541- (Gracilaria gracilis GNS1m male)
ATGGGTAAGAAGAAGCCCGGACAGGGGAAGAAGAAGGTCGTGCTTTCGCT
CGCAGAGTTTACTCAAGATGTGCCAAAAGCCGGAGTGGACCCGGACATTG
CGTCACTTCCTACGGCTCCCAAGGCCCCCGAGGAATGGGAAGCGGAAGGG
GGCCGCCCTGAATACAACTCGCGCGGTTACAAAGAGAGGACAGCTCACAG
AGACCGCGGTTACGACGCCGACGCCGACTTTGATGACCGCGACTGGACGC
GAAAGGGACCTCTAGAAGAGAATGATGGTCCCGGCTTCGGCGCTGGTCCC
GAACGAGACTGGGGTGATATACGTCGTGGTCCTCTGGATTCGGAAGACGC
TGCTGCTCCGGAACGCAACTGGGATGGCATGCGAAGAGGTCCTGTTGAGT
CCTCGTTTGAATCCAAACATGTGGAGCGTGATTGGGGCGCGCGAAAGGGT
CCCATCGAAGCCGAGGCCCCGGCATCGCGAACCATTTCCGATGATCAGTG
GGGTAGTGCTCGACAAGGACCTATTGAAGCAGAGTTTCGGCAGCAAAAGG
AAGAGCCAAACTGGAATGTACGTCGCCCGATTGATGCAGGTGGCGCATCA
TCCACAGCAGAAGCAGATTGGTCGGCTCGCAAGGGACCAGTTGAAGCTGA
ATTTGCTGCTGAGACACAGGAGCGAGACTGGACTGCTAGGAAGGGTCCAG
TCGAGGCTGATACGGAAAAGAGTCAACCTGAAGGGGACTGGGCAGGTGTC
CGAAGACGCCCGGTGGAGTCTACGTTTCCGCGCCAACAGCCAGAGGTGGA
TTGGTCCGCCAGAAAGGGGCCGATTGAACCTGAAGTGGAGAAAACCCGGA
AAGCTATCCGTGATATCGACTTTTCTGACAGACGAGGAGCGAAGTTGGAA
GAACTGAAGAAAGCTGAAGACGTAGGGAAGCTCCCAACTGAGAAGGAATC
GTCAATGTCTCGGGAAAATTGGCGCCGAGATACCCAGGGTGTTACCGAAA
GGAGAAGTCGACAGCGTACCCACATGGAAACGTCTCCGCCAAGGCAAGAC
ACCACCCACAACGTTAGGGACTGGGGAGCTGCAAGAGAACGATCTCATCC
AATCGAGGCGAAGATGGGCTCTCCACAAAGAGCGGCCTCACGCGAAGGCA
ACGCCAGTCAGCCCGGCTCTGAGGAAGTTGCGAATAATGAATTAGAGACG
CACGCCCCGCAAGATGAGACTGAAAGCGATTGGACTACAGTTCGTTCAAG
TCAACGACGCACTCCGGGAGCTAATCGTCGCCATTCGGGCAGAGGTTTCG
GTCGAAGAGGTCCCCGCACCTCGATAAGGGATAATAAAGGTGAAAGAGAG
TCGCGCAGCGAATTTTCGGCGAGGGAGAAGGAGAGTCACAGCACCGACAG
ACCTCTGACTTCCACAGTTACAGATGAATAA
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