Ggra4745.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4745.t1
Unique NameGgra4745.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:124471..125703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706060.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue1.17e-37
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4745Ggra4745Gracilaria gracilis GNS1m malegenetig00000065_pilon 124471..125703 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4745.t1.start1Ggra4745.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 124471..124473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4745.t1.CDS1Ggra4745.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 124471..125703 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4745.t1.exon1Ggra4745.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 124471..125703 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4745.t1.stop1Ggra4745.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 125701..125703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4745.t1Ggra4745.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 124471..125703 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4745.t1 ID=Ggra4745.t1|Name=Ggra4745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp
MAPRAVATLPRTVLRQSVSKSSSSAAPVVMSCKARRPFLPLSPLIFSVLL
LSLCLAFLLRSSPVHHALLRHVSSDANIAYFIQLTPETVHHLPRLYSAIY
HPRNIHALHFDVRIPQSQIQRSIATIRAQNPNFNKDTIIIPSRKLVYDGI
SMVLNTLHAMTELLKYPNWHYFINLSGHDYPLVPPHIPRTLLGSVRSLAP
NFLSMGNRARAHSVFYDRASTLFTDTSLCFPPNAPHQPQESPVCNVLAKS
TTPNPIFSQSFVPAYSGAWLVVSRQYCENATTSSDARHLLVAFANMRGAD
EFFFATLARYNPAFNRSLVPRALRKVVWVADGTHAGQHPFFVDDQLDDGS
FRFLKELNGSVDFFARKFRHPGSQFMDVIDDMARNPDRISRVSTAFGWLA
IKLRRQMDAS*
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spliced messenger RNA

>Ggra4745.t1 ID=Ggra4745.t1|Name=Ggra4745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000065_pilon:124471..125703+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTCGAGCGGTTGCCACCCTGCCCCGGACTGTGCTCCGTCAATC
CGTTTCGAAGTCATCGTCGTCTGCTGCCCCCGTCGTCATGTCTTGCAAGG
CGCGACGTCCCTTTCTCCCGCTTTCTCCGCTCATCTTCTCTGTGTTGTTG
CTTTCCCTTTGTCTCGCTTTCCTCCTTCGATCTTCCCCGGTGCATCACGC
TTTGTTGCGACATGTCTCTTCAGACGCTAATATCGCATACTTTATACAGC
TTACCCCGGAGACTGTTCACCATCTGCCGAGGCTCTACTCTGCCATTTAT
CATCCTCGAAACATTCATGCCCTTCACTTCGACGTTCGTATCCCCCAGTC
TCAAATACAGCGTTCCATCGCCACTATACGTGCACAGAATCCGAACTTCA
ACAAAGACACCATCATCATTCCGTCTCGGAAGCTGGTATATGATGGTATT
TCAATGGTTCTCAATACCTTACATGCCATGACTGAGCTCCTCAAGTATCC
GAACTGGCATTACTTTATCAATCTTTCAGGTCATGACTATCCACTCGTTC
CGCCGCATATCCCTCGAACACTGCTTGGCTCCGTAAGATCACTTGCTCCA
AATTTTCTGTCAATGGGTAATCGAGCGCGAGCACATTCTGTATTCTATGA
TCGTGCGTCCACCTTGTTCACCGATACTTCCTTATGTTTCCCGCCAAATG
CTCCTCATCAACCGCAAGAGAGTCCTGTTTGTAACGTGCTAGCAAAGTCC
ACAACCCCTAACCCTATCTTCTCTCAGTCATTTGTACCAGCTTACTCGGG
AGCATGGCTTGTTGTATCTCGCCAGTACTGTGAGAACGCGACCACATCAT
CAGATGCTCGTCATCTACTCGTAGCGTTTGCGAACATGCGCGGGGCGGAT
GAATTCTTCTTTGCAACGTTGGCCAGATATAATCCTGCCTTTAATCGATC
ACTTGTCCCTAGGGCGTTGAGAAAAGTTGTATGGGTTGCCGATGGTACTC
ATGCCGGGCAACACCCTTTCTTTGTTGATGATCAATTGGATGATGGCTCT
TTCCGTTTCCTCAAGGAACTTAATGGATCGGTCGACTTCTTTGCTCGAAA
GTTCCGACATCCTGGCAGTCAATTTATGGATGTTATTGACGATATGGCTA
GAAATCCGGATCGTATTAGTAGAGTCTCAACCGCCTTTGGGTGGCTTGCT
ATCAAGTTGAGAAGGCAAATGGATGCCTCTTGA
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protein sequence of Ggra4745.t1

>Ggra4745.t1 ID=Ggra4745.t1|Name=Ggra4745.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=411bp
MAPRAVATLPRTVLRQSVSKSSSSAAPVVMSCKARRPFLPLSPLIFSVLL
LSLCLAFLLRSSPVHHALLRHVSSDANIAYFIQLTPETVHHLPRLYSAIY
HPRNIHALHFDVRIPQSQIQRSIATIRAQNPNFNKDTIIIPSRKLVYDGI
SMVLNTLHAMTELLKYPNWHYFINLSGHDYPLVPPHIPRTLLGSVRSLAP
NFLSMGNRARAHSVFYDRASTLFTDTSLCFPPNAPHQPQESPVCNVLAKS
TTPNPIFSQSFVPAYSGAWLVVSRQYCENATTSSDARHLLVAFANMRGAD
EFFFATLARYNPAFNRSLVPRALRKVVWVADGTHAGQHPFFVDDQLDDGS
FRFLKELNGSVDFFARKFRHPGSQFMDVIDDMARNPDRISRVSTAFGWLA
IKLRRQMDAS*
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mRNA from alignment at tig00000065_pilon:124471..125703+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4745.t1 ID=Ggra4745.t1|Name=Ggra4745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000065_pilon:124471..125703+ (Gracilaria gracilis GNS1m male)
ATGGCTCCTCGAGCGGTTGCCACCCTGCCCCGGACTGTGCTCCGTCAATC
CGTTTCGAAGTCATCGTCGTCTGCTGCCCCCGTCGTCATGTCTTGCAAGG
CGCGACGTCCCTTTCTCCCGCTTTCTCCGCTCATCTTCTCTGTGTTGTTG
CTTTCCCTTTGTCTCGCTTTCCTCCTTCGATCTTCCCCGGTGCATCACGC
TTTGTTGCGACATGTCTCTTCAGACGCTAATATCGCATACTTTATACAGC
TTACCCCGGAGACTGTTCACCATCTGCCGAGGCTCTACTCTGCCATTTAT
CATCCTCGAAACATTCATGCCCTTCACTTCGACGTTCGTATCCCCCAGTC
TCAAATACAGCGTTCCATCGCCACTATACGTGCACAGAATCCGAACTTCA
ACAAAGACACCATCATCATTCCGTCTCGGAAGCTGGTATATGATGGTATT
TCAATGGTTCTCAATACCTTACATGCCATGACTGAGCTCCTCAAGTATCC
GAACTGGCATTACTTTATCAATCTTTCAGGTCATGACTATCCACTCGTTC
CGCCGCATATCCCTCGAACACTGCTTGGCTCCGTAAGATCACTTGCTCCA
AATTTTCTGTCAATGGGTAATCGAGCGCGAGCACATTCTGTATTCTATGA
TCGTGCGTCCACCTTGTTCACCGATACTTCCTTATGTTTCCCGCCAAATG
CTCCTCATCAACCGCAAGAGAGTCCTGTTTGTAACGTGCTAGCAAAGTCC
ACAACCCCTAACCCTATCTTCTCTCAGTCATTTGTACCAGCTTACTCGGG
AGCATGGCTTGTTGTATCTCGCCAGTACTGTGAGAACGCGACCACATCAT
CAGATGCTCGTCATCTACTCGTAGCGTTTGCGAACATGCGCGGGGCGGAT
GAATTCTTCTTTGCAACGTTGGCCAGATATAATCCTGCCTTTAATCGATC
ACTTGTCCCTAGGGCGTTGAGAAAAGTTGTATGGGTTGCCGATGGTACTC
ATGCCGGGCAACACCCTTTCTTTGTTGATGATCAATTGGATGATGGCTCT
TTCCGTTTCCTCAAGGAACTTAATGGATCGGTCGACTTCTTTGCTCGAAA
GTTCCGACATCCTGGCAGTCAATTTATGGATGTTATTGACGATATGGCTA
GAAATCCGGATCGTATTAGTAGAGTCTCAACCGCCTTTGGGTGGCTTGCT
ATCAAGTTGAGAAGGCAAATGGATGCCTCTTGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:124471..125703+

>Ggra4745.t1 ID=Ggra4745.t1|Name=Ggra4745.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1233bp|location=Sequence derived from alignment at tig00000065_pilon:124471..125703+ (Gracilaria gracilis GNS1m male)
ATGGCTCCTCGAGCGGTTGCCACCCTGCCCCGGACTGTGCTCCGTCAATC
CGTTTCGAAGTCATCGTCGTCTGCTGCCCCCGTCGTCATGTCTTGCAAGG
CGCGACGTCCCTTTCTCCCGCTTTCTCCGCTCATCTTCTCTGTGTTGTTG
CTTTCCCTTTGTCTCGCTTTCCTCCTTCGATCTTCCCCGGTGCATCACGC
TTTGTTGCGACATGTCTCTTCAGACGCTAATATCGCATACTTTATACAGC
TTACCCCGGAGACTGTTCACCATCTGCCGAGGCTCTACTCTGCCATTTAT
CATCCTCGAAACATTCATGCCCTTCACTTCGACGTTCGTATCCCCCAGTC
TCAAATACAGCGTTCCATCGCCACTATACGTGCACAGAATCCGAACTTCA
ACAAAGACACCATCATCATTCCGTCTCGGAAGCTGGTATATGATGGTATT
TCAATGGTTCTCAATACCTTACATGCCATGACTGAGCTCCTCAAGTATCC
GAACTGGCATTACTTTATCAATCTTTCAGGTCATGACTATCCACTCGTTC
CGCCGCATATCCCTCGAACACTGCTTGGCTCCGTAAGATCACTTGCTCCA
AATTTTCTGTCAATGGGTAATCGAGCGCGAGCACATTCTGTATTCTATGA
TCGTGCGTCCACCTTGTTCACCGATACTTCCTTATGTTTCCCGCCAAATG
CTCCTCATCAACCGCAAGAGAGTCCTGTTTGTAACGTGCTAGCAAAGTCC
ACAACCCCTAACCCTATCTTCTCTCAGTCATTTGTACCAGCTTACTCGGG
AGCATGGCTTGTTGTATCTCGCCAGTACTGTGAGAACGCGACCACATCAT
CAGATGCTCGTCATCTACTCGTAGCGTTTGCGAACATGCGCGGGGCGGAT
GAATTCTTCTTTGCAACGTTGGCCAGATATAATCCTGCCTTTAATCGATC
ACTTGTCCCTAGGGCGTTGAGAAAAGTTGTATGGGTTGCCGATGGTACTC
ATGCCGGGCAACACCCTTTCTTTGTTGATGATCAATTGGATGATGGCTCT
TTCCGTTTCCTCAAGGAACTTAATGGATCGGTCGACTTCTTTGCTCGAAA
GTTCCGACATCCTGGCAGTCAATTTATGGATGTTATTGACGATATGGCTA
GAAATCCGGATCGTATTAGTAGAGTCTCAACCGCCTTTGGGTGGCTTGCT
ATCAAGTTGAGAAGGCAAATGGATGCCTCTTGA
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