Ggra4741.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4741.t1
Unique Name	Ggra4741.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000065_pilon	contig	tig00000065_pilon:115267..117132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122223.KB890697_gene1052
PFAMs	ACT_4,HD_4,RelA_SpoT,TGS
Max annot lvl	1297\|Deinococcus-Thermus
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K00951
KEGG Reaction	R00429
KEGG Pathway	ko00230,map00230
Evalue	2.96e-60
EggNOG OGs	COG0317@1\|root,COG0317@2\|Bacteria,1WID2@1297\|Deinococcus-Thermus
EC	2.7.6.5
Description	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
COG category	KT
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4741	Ggra4741	Gracilaria gracilis GNS1m male	gene	tig00000065_pilon 115267..117132 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4741.t1.start1	Ggra4741.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000065_pilon 115267..115269 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4741.t1.CDS1	Ggra4741.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000065_pilon 115267..117132 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4741.t1.exon1	Ggra4741.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000065_pilon 115267..117132 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4741.t1.stop1	Ggra4741.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000065_pilon 117130..117132 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4741.t1	Ggra4741.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000065_pilon 115267..117132 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000065_pilon:115267..117132+
coding sequence from alignment at tig00000065_pilon:115267..117132+

mRNA sequence

>Ggra4741.t1 ID=Ggra4741.t1|Name=Ggra4741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=622bp
MTASAFVPFLPTVRLRRGDPHRRSPSRLRPPRALAAAPKPPVPPLTPAQW
LNSSSATSLPPVVPPAASWRDLPPTNPSAFEAAPSTLQHLVRDLEQRIFY
LGPVNRHKVLKAVQLATEAVGAPPPLVRYNLTVALIVADLQMDCDTLCAA
VLTQVISRPGCTRRDVERHVGPDVLRILNFHNQLNTTIQLCAHSHFTEMS
FSNLRELILVGAMEEPRAISLEVARAVLAIRTLDTLSDEQSKITIARQTM
YLHAPLANQLGIWYAQGELEEHAFMYLQPESYHMVRRLVGERRRECQTTL
AQNKEFLERVLTKSPHVRSLVRSVSIKGRVKGLYSVYRKMTRSGKKVCEI
YDLLALRVIIQPKRADEASEQAACRAVADVIRDHYDTIEARAKDYIASPK
RNGYRSLHLTVLSPQSSTPLEIQIRSEKMHHVAEFGAAAHWIYKEHATKD
DDGSSSVEDEDASTWSASVSCCCESTTPNNDGDVTRSGLSAEMYNIKATQ
TIVVKMKAADVREMTFSSDEKLSELASKRVALARWHGDGYDEVRRGYLTC
MASAIRASRVIVAAAGQLYGLAVGSTLMDLAHGLGVASLGAIAVVNGSVA
PLTQRLEMNDIVRFISALPEA*

spliced messenger RNA

>Ggra4741.t1 ID=Ggra4741.t1|Name=Ggra4741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00000065_pilon:115267..117132+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
aTGACCGCATCCGCCTTCGTCCCGTTTCTCCCGACCGTCCGTCTTCGTCG
CGGCGACCCCCATCGTCGCTCGCCCTCCCGTCTACGTCCCCCACGCGCGC
TCGCGGCCGCGCCTAAGCCGCCTGTGCCACCACTCACTCCCGCGCAATGG
CTGAATAGCTCGTCTGCCACTTCTTTGCCGCCCGTCGTGCCGCCCGCCGC
GTCATGGCGTGACTTACCGCCTACTAACCCGTCCGCGTTCGAGGCGGCGC
CGTCCACGCTGCAGCACCTGGTCCGAGACCTGGAACAGCGAATTTTCTAC
CTGGGGCCTGTCAATCGACACAAGGTTTTGAAAGCCGTTCAGCTTGCCAC
CGAGGCCGTTGGCGCACCGCCACCGCTCGTGCGCTATAACCTCACCGTCG
CGCTCATCGTGGCCGATCTGCAGATGGACTGCGACACGCTGTGCGCCGCC
GTTTTAACACAGGTTATTTCACGCCCGGGCTGTACAAGAAGGGACGTGGA
GCGACACGTCGGCCCGGACGTTCTTCGAATCCTCAACTTTCATAACCAGC
TCAACACCACCATTCAACTTTGTGCTCACTCCCATTTTACTGAGATGTCT
TTTTCAAACTTACGCGAGCTCATTTTGGTCGGCGCAATGGAAGAGCCACG
CGCCATCTCGCTCGAGGTGGCGCGCGCCGTGCTGGCTATTCGCACCTTGG
ATACACTTTCAGACGAGCAGTCCAAGATCACCATAGCGCGCCAAACCATG
TACCTGCATGCGCCGTTGGCAAACCAATTAGGCATATGGTACGCGCAGGG
CGAGCTAGAGGAACACGCGTTCATGTACCTGCAGCCGGAGAGCTATCATA
TGGTGCGCCGTCTAGTTGGCGAAAGGCGCCGTGAGTGCCAAACCACCCTG
GCGCAAAACAAGGAGTTTTTGGAGCGAGTGCTCACCAAATCGCCGCACGT
GCGCAGTTTGGTGCGCTCCGTCTCCATCAAGGGCCGTGTGAAAGGGCTCT
ACTCCGTGTACCGTAAGATGACTCGATCTGGCAAGAAGGTTTGCGAAATC
TATGACTTGCTCGCGTTGCGTGTCATCATACAACCCAAGCGCGCCGATGA
GGCGTCCGAGCAGGCCGCTTGCCGTGCCGTTGCTGACGTAATTCGGGACC
ATTATGATACTATCGAGGCGCGTGCAAAGGATTATATCGCCAGTCCTAAG
CGCAATGGGTACCGTAGCTTGCATCTCACGGTGCTTTCACCGCAGAGCTC
TACGCCGTTGGAGATCCAAATTCGAAGTGAGAAGATGCATCATGTGGCTG
AATTTGGAGCTGCTGCGCATTGGATTTACAAGGAACATGCCACCAAGGAT
GATGATGGCTCGAGCTCCGTGGAAGATGAAGATGCGTCGACTTGGTCTGC
ATCTGTTTCTTGTTGTTGTGAATCCACCACGCCGAACAACGACGGTGACG
TCACCAGGAGTGGCTTGAGCGCTGAAATGTACAATATCAAAGCGACGCAA
ACTATAGTTGTGAAGATGAAAGCGGCCGACGTGCGTGAGATGACTTTTTC
GTCGGACGAGAAACTGAGCGAGCTTGCGTCAAAACGGGTTGCTCTGGCTA
GGTGGCATGGCGACGGATATGACGAGGTTAGACGTGGCTATTTGACGTGC
ATGGCATCGGCCATCCGAGCGAGCCGTGTGATTGTTGCGGCGGCTGGTCA
GCTTTACGGACTGGCTGTGGGTTCTACGCTGATGGACCTGGCCCATGGAC
TTGGAGTGGCGTCGCTTGGAGCTATTGCCGTTGTGAATGGATCAGTTGCG
CCGCTGACTCAGAGACTGGAGATGAATGACATTGTGCGGTTCATCTCAGC
TCTACCTGAGGCTTGA

protein sequence of Ggra4741.t1

>Ggra4741.t1 ID=Ggra4741.t1|Name=Ggra4741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=622bp
MTASAFVPFLPTVRLRRGDPHRRSPSRLRPPRALAAAPKPPVPPLTPAQW
LNSSSATSLPPVVPPAASWRDLPPTNPSAFEAAPSTLQHLVRDLEQRIFY
LGPVNRHKVLKAVQLATEAVGAPPPLVRYNLTVALIVADLQMDCDTLCAA
VLTQVISRPGCTRRDVERHVGPDVLRILNFHNQLNTTIQLCAHSHFTEMS
FSNLRELILVGAMEEPRAISLEVARAVLAIRTLDTLSDEQSKITIARQTM
YLHAPLANQLGIWYAQGELEEHAFMYLQPESYHMVRRLVGERRRECQTTL
AQNKEFLERVLTKSPHVRSLVRSVSIKGRVKGLYSVYRKMTRSGKKVCEI
YDLLALRVIIQPKRADEASEQAACRAVADVIRDHYDTIEARAKDYIASPK
RNGYRSLHLTVLSPQSSTPLEIQIRSEKMHHVAEFGAAAHWIYKEHATKD
DDGSSSVEDEDASTWSASVSCCCESTTPNNDGDVTRSGLSAEMYNIKATQ
TIVVKMKAADVREMTFSSDEKLSELASKRVALARWHGDGYDEVRRGYLTC
MASAIRASRVIVAAAGQLYGLAVGSTLMDLAHGLGVASLGAIAVVNGSVA
PLTQRLEMNDIVRFISALPEA*

mRNA from alignment at tig00000065_pilon:115267..117132+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4741.t1 ID=Ggra4741.t1|Name=Ggra4741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00000065_pilon:115267..117132+ (Gracilaria gracilis GNS1m male)
aTGACCGCATCCGCCTTCGTCCCGTTTCTCCCGACCGTCCGTCTTCGTCG
CGGCGACCCCCATCGTCGCTCGCCCTCCCGTCTACGTCCCCCACGCGCGC
TCGCGGCCGCGCCTAAGCCGCCTGTGCCACCACTCACTCCCGCGCAATGG
CTGAATAGCTCGTCTGCCACTTCTTTGCCGCCCGTCGTGCCGCCCGCCGC
GTCATGGCGTGACTTACCGCCTACTAACCCGTCCGCGTTCGAGGCGGCGC
CGTCCACGCTGCAGCACCTGGTCCGAGACCTGGAACAGCGAATTTTCTAC
CTGGGGCCTGTCAATCGACACAAGGTTTTGAAAGCCGTTCAGCTTGCCAC
CGAGGCCGTTGGCGCACCGCCACCGCTCGTGCGCTATAACCTCACCGTCG
CGCTCATCGTGGCCGATCTGCAGATGGACTGCGACACGCTGTGCGCCGCC
GTTTTAACACAGGTTATTTCACGCCCGGGCTGTACAAGAAGGGACGTGGA
GCGACACGTCGGCCCGGACGTTCTTCGAATCCTCAACTTTCATAACCAGC
TCAACACCACCATTCAACTTTGTGCTCACTCCCATTTTACTGAGATGTCT
TTTTCAAACTTACGCGAGCTCATTTTGGTCGGCGCAATGGAAGAGCCACG
CGCCATCTCGCTCGAGGTGGCGCGCGCCGTGCTGGCTATTCGCACCTTGG
ATACACTTTCAGACGAGCAGTCCAAGATCACCATAGCGCGCCAAACCATG
TACCTGCATGCGCCGTTGGCAAACCAATTAGGCATATGGTACGCGCAGGG
CGAGCTAGAGGAACACGCGTTCATGTACCTGCAGCCGGAGAGCTATCATA
TGGTGCGCCGTCTAGTTGGCGAAAGGCGCCGTGAGTGCCAAACCACCCTG
GCGCAAAACAAGGAGTTTTTGGAGCGAGTGCTCACCAAATCGCCGCACGT
GCGCAGTTTGGTGCGCTCCGTCTCCATCAAGGGCCGTGTGAAAGGGCTCT
ACTCCGTGTACCGTAAGATGACTCGATCTGGCAAGAAGGTTTGCGAAATC
TATGACTTGCTCGCGTTGCGTGTCATCATACAACCCAAGCGCGCCGATGA
GGCGTCCGAGCAGGCCGCTTGCCGTGCCGTTGCTGACGTAATTCGGGACC
ATTATGATACTATCGAGGCGCGTGCAAAGGATTATATCGCCAGTCCTAAG
CGCAATGGGTACCGTAGCTTGCATCTCACGGTGCTTTCACCGCAGAGCTC
TACGCCGTTGGAGATCCAAATTCGAAGTGAGAAGATGCATCATGTGGCTG
AATTTGGAGCTGCTGCGCATTGGATTTACAAGGAACATGCCACCAAGGAT
GATGATGGCTCGAGCTCCGTGGAAGATGAAGATGCGTCGACTTGGTCTGC
ATCTGTTTCTTGTTGTTGTGAATCCACCACGCCGAACAACGACGGTGACG
TCACCAGGAGTGGCTTGAGCGCTGAAATGTACAATATCAAAGCGACGCAA
ACTATAGTTGTGAAGATGAAAGCGGCCGACGTGCGTGAGATGACTTTTTC
GTCGGACGAGAAACTGAGCGAGCTTGCGTCAAAACGGGTTGCTCTGGCTA
GGTGGCATGGCGACGGATATGACGAGGTTAGACGTGGCTATTTGACGTGC
ATGGCATCGGCCATCCGAGCGAGCCGTGTGATTGTTGCGGCGGCTGGTCA
GCTTTACGGACTGGCTGTGGGTTCTACGCTGATGGACCTGGCCCATGGAC
TTGGAGTGGCGTCGCTTGGAGCTATTGCCGTTGTGAATGGATCAGTTGCG
CCGCTGACTCAGAGACTGGAGATGAATGACATTGTGCGGTTCATCTCAGC
TCTACCTGAGGCTTGA

Coding sequence (CDS) from alignment at tig00000065_pilon:115267..117132+

>Ggra4741.t1 ID=Ggra4741.t1|Name=Ggra4741.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1866bp|location=Sequence derived from alignment at tig00000065_pilon:115267..117132+ (Gracilaria gracilis GNS1m male)
aTGACCGCATCCGCCTTCGTCCCGTTTCTCCCGACCGTCCGTCTTCGTCG
CGGCGACCCCCATCGTCGCTCGCCCTCCCGTCTACGTCCCCCACGCGCGC
TCGCGGCCGCGCCTAAGCCGCCTGTGCCACCACTCACTCCCGCGCAATGG
CTGAATAGCTCGTCTGCCACTTCTTTGCCGCCCGTCGTGCCGCCCGCCGC
GTCATGGCGTGACTTACCGCCTACTAACCCGTCCGCGTTCGAGGCGGCGC
CGTCCACGCTGCAGCACCTGGTCCGAGACCTGGAACAGCGAATTTTCTAC
CTGGGGCCTGTCAATCGACACAAGGTTTTGAAAGCCGTTCAGCTTGCCAC
CGAGGCCGTTGGCGCACCGCCACCGCTCGTGCGCTATAACCTCACCGTCG
CGCTCATCGTGGCCGATCTGCAGATGGACTGCGACACGCTGTGCGCCGCC
GTTTTAACACAGGTTATTTCACGCCCGGGCTGTACAAGAAGGGACGTGGA
GCGACACGTCGGCCCGGACGTTCTTCGAATCCTCAACTTTCATAACCAGC
TCAACACCACCATTCAACTTTGTGCTCACTCCCATTTTACTGAGATGTCT
TTTTCAAACTTACGCGAGCTCATTTTGGTCGGCGCAATGGAAGAGCCACG
CGCCATCTCGCTCGAGGTGGCGCGCGCCGTGCTGGCTATTCGCACCTTGG
ATACACTTTCAGACGAGCAGTCCAAGATCACCATAGCGCGCCAAACCATG
TACCTGCATGCGCCGTTGGCAAACCAATTAGGCATATGGTACGCGCAGGG
CGAGCTAGAGGAACACGCGTTCATGTACCTGCAGCCGGAGAGCTATCATA
TGGTGCGCCGTCTAGTTGGCGAAAGGCGCCGTGAGTGCCAAACCACCCTG
GCGCAAAACAAGGAGTTTTTGGAGCGAGTGCTCACCAAATCGCCGCACGT
GCGCAGTTTGGTGCGCTCCGTCTCCATCAAGGGCCGTGTGAAAGGGCTCT
ACTCCGTGTACCGTAAGATGACTCGATCTGGCAAGAAGGTTTGCGAAATC
TATGACTTGCTCGCGTTGCGTGTCATCATACAACCCAAGCGCGCCGATGA
GGCGTCCGAGCAGGCCGCTTGCCGTGCCGTTGCTGACGTAATTCGGGACC
ATTATGATACTATCGAGGCGCGTGCAAAGGATTATATCGCCAGTCCTAAG
CGCAATGGGTACCGTAGCTTGCATCTCACGGTGCTTTCACCGCAGAGCTC
TACGCCGTTGGAGATCCAAATTCGAAGTGAGAAGATGCATCATGTGGCTG
AATTTGGAGCTGCTGCGCATTGGATTTACAAGGAACATGCCACCAAGGAT
GATGATGGCTCGAGCTCCGTGGAAGATGAAGATGCGTCGACTTGGTCTGC
ATCTGTTTCTTGTTGTTGTGAATCCACCACGCCGAACAACGACGGTGACG
TCACCAGGAGTGGCTTGAGCGCTGAAATGTACAATATCAAAGCGACGCAA
ACTATAGTTGTGAAGATGAAAGCGGCCGACGTGCGTGAGATGACTTTTTC
GTCGGACGAGAAACTGAGCGAGCTTGCGTCAAAACGGGTTGCTCTGGCTA
GGTGGCATGGCGACGGATATGACGAGGTTAGACGTGGCTATTTGACGTGC
ATGGCATCGGCCATCCGAGCGAGCCGTGTGATTGTTGCGGCGGCTGGTCA
GCTTTACGGACTGGCTGTGGGTTCTACGCTGATGGACCTGGCCCATGGAC
TTGGAGTGGCGTCGCTTGGAGCTATTGCCGTTGTGAATGGATCAGTTGCG
CCGCTGACTCAGAGACTGGAGATGAATGACATTGTGCGGTTCATCTCAGC
TCTACCTGAGGCTTGA