Ggra3431.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3431.t1
Unique NameGgra3431.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:23004..23711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009042159.1
PFAMsF-box,Kelch_1
Max annot lvl2759|Eukaryota
KEGG koko:K10465
Evalue1.28e-14
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3431Ggra3431Gracilaria gracilis GNS1m malegenetig00000059_pilon 23004..23711 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3431.t1.start1Ggra3431.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 23004..23006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3431.t1.CDS1Ggra3431.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 23004..23711 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3431.t1.exon1Ggra3431.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 23004..23711 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3431.t1.stop1Ggra3431.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 23709..23711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3431.t1Ggra3431.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 23004..23711 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3431.t1 ID=Ggra3431.t1|Name=Ggra3431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=236bp
MGIHWGIVEPSGEQYIIEYLNNQLVWHRSDVAVTTNDPGYSWHVQNLNRY
GYVRAPKPDVPADMQVDQPSNVYPVPVHSVVPETVSHGTGGMDLPGDTSH
PSRFVLLYYLRSLAEANAPPQNYLEALALATNLINAVAIPFGTVGGTADS
SSLKNIKKIRSVFKKTVSLMLTDVKLAQRTVRRVPKRNVVFYRDYVHVIE
KHIDLNKLDFNETASVKTKKVYDAQESFGVESDLP*
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spliced messenger RNA

>Ggra3431.t1 ID=Ggra3431.t1|Name=Ggra3431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000059_pilon:23004..23711+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATTCACTGGGGTATCGTTGAACCGAGCGGGGAGCAGTACATCAT
CGAATATCTCAACAACCAACTTGTGTGGCACAGGAGTGATGTAGCCGTCA
CGACGAACGACCCCGGATACAGTTGGCATGTCCAGAACTTGAACCGATAC
GGGTATGTGCGAGCTCCAAAGCCAGACGTCCCTGCAGACATGCAAGTGGA
CCAGCCGTCCAACGTGTACCCGGTGCCAGTGCACAGCGTAGTGCCGGAGA
CGGTCTCCCACGGGACCGGCGGTATGGATCTTCCGGGCGATACGTCTCAC
CCGTCACGATTCGTGCTGCTGTATTACCTTCGGTCACTTGCGGAAGCGAA
TGCACCGCCCCAGAACTACCTCGAGGCGCTAGCTCTGGCGACCAATTTGA
TCAACGCTGTGGCGATTCCATTTGGGACGGTGGGAGGCACTGCAGACAGC
TCGTCGCTCAAAAACATCAAGAAAATCAGGTCGGTGTTCAAGAAAACGGT
GTCATTAATGTTGACGGATGTGAAACTTGCGCAGAGGACGGTTCGGAGAG
TTCCAAAGCGAAACGTAGTATTCTACCGCGACTACGTTCATGTGATAGAG
AAGCATATCGACCTGAACAAATTGGATTTCAATGAAACGGCATCTGTGAA
GACGAAGAAGGTGTATGATGCGCAAGAGTCGTTCGGTGTAGAATCTGACC
TGCCCTGA
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protein sequence of Ggra3431.t1

>Ggra3431.t1 ID=Ggra3431.t1|Name=Ggra3431.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=236bp
MGIHWGIVEPSGEQYIIEYLNNQLVWHRSDVAVTTNDPGYSWHVQNLNRY
GYVRAPKPDVPADMQVDQPSNVYPVPVHSVVPETVSHGTGGMDLPGDTSH
PSRFVLLYYLRSLAEANAPPQNYLEALALATNLINAVAIPFGTVGGTADS
SSLKNIKKIRSVFKKTVSLMLTDVKLAQRTVRRVPKRNVVFYRDYVHVIE
KHIDLNKLDFNETASVKTKKVYDAQESFGVESDLP*
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mRNA from alignment at tig00000059_pilon:23004..23711+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3431.t1 ID=Ggra3431.t1|Name=Ggra3431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000059_pilon:23004..23711+ (Gracilaria gracilis GNS1m male)
ATGGGTATTCACTGGGGTATCGTTGAACCGAGCGGGGAGCAGTACATCAT
CGAATATCTCAACAACCAACTTGTGTGGCACAGGAGTGATGTAGCCGTCA
CGACGAACGACCCCGGATACAGTTGGCATGTCCAGAACTTGAACCGATAC
GGGTATGTGCGAGCTCCAAAGCCAGACGTCCCTGCAGACATGCAAGTGGA
CCAGCCGTCCAACGTGTACCCGGTGCCAGTGCACAGCGTAGTGCCGGAGA
CGGTCTCCCACGGGACCGGCGGTATGGATCTTCCGGGCGATACGTCTCAC
CCGTCACGATTCGTGCTGCTGTATTACCTTCGGTCACTTGCGGAAGCGAA
TGCACCGCCCCAGAACTACCTCGAGGCGCTAGCTCTGGCGACCAATTTGA
TCAACGCTGTGGCGATTCCATTTGGGACGGTGGGAGGCACTGCAGACAGC
TCGTCGCTCAAAAACATCAAGAAAATCAGGTCGGTGTTCAAGAAAACGGT
GTCATTAATGTTGACGGATGTGAAACTTGCGCAGAGGACGGTTCGGAGAG
TTCCAAAGCGAAACGTAGTATTCTACCGCGACTACGTTCATGTGATAGAG
AAGCATATCGACCTGAACAAATTGGATTTCAATGAAACGGCATCTGTGAA
GACGAAGAAGGTGTATGATGCGCAAGAGTCGTTCGGTGTAGAATCTGACC
TGCCCTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:23004..23711+

>Ggra3431.t1 ID=Ggra3431.t1|Name=Ggra3431.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000059_pilon:23004..23711+ (Gracilaria gracilis GNS1m male)
ATGGGTATTCACTGGGGTATCGTTGAACCGAGCGGGGAGCAGTACATCAT
CGAATATCTCAACAACCAACTTGTGTGGCACAGGAGTGATGTAGCCGTCA
CGACGAACGACCCCGGATACAGTTGGCATGTCCAGAACTTGAACCGATAC
GGGTATGTGCGAGCTCCAAAGCCAGACGTCCCTGCAGACATGCAAGTGGA
CCAGCCGTCCAACGTGTACCCGGTGCCAGTGCACAGCGTAGTGCCGGAGA
CGGTCTCCCACGGGACCGGCGGTATGGATCTTCCGGGCGATACGTCTCAC
CCGTCACGATTCGTGCTGCTGTATTACCTTCGGTCACTTGCGGAAGCGAA
TGCACCGCCCCAGAACTACCTCGAGGCGCTAGCTCTGGCGACCAATTTGA
TCAACGCTGTGGCGATTCCATTTGGGACGGTGGGAGGCACTGCAGACAGC
TCGTCGCTCAAAAACATCAAGAAAATCAGGTCGGTGTTCAAGAAAACGGT
GTCATTAATGTTGACGGATGTGAAACTTGCGCAGAGGACGGTTCGGAGAG
TTCCAAAGCGAAACGTAGTATTCTACCGCGACTACGTTCATGTGATAGAG
AAGCATATCGACCTGAACAAATTGGATTTCAATGAAACGGCATCTGTGAA
GACGAAGAAGGTGTATGATGCGCAAGAGTCGTTCGGTGTAGAATCTGACC
TGCCCTGA
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