Ggra3473.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3473.t1
Unique Name	Ggra3473.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	749

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:287053..289299 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMF089CT
Preferred name	DXS
PFAMs	DXP_synthase_N,Transket_pyr,Transketolase_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00032,RC00226,RC00571,RC01560
KEGG ko	ko:K00615,ko:K01662
KEGG Reaction	R01067,R01641,R01830,R05636,R06590
KEGG Pathway	ko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00004,M00007,M00096,M00165,M00167
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006725,GO:0006778,GO:0006779,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0008661,GO:0009058,GO:0009240,GO:0009507,GO:0009536,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016744,GO:0018130,GO:0019288,GO:0019438,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046490,GO:0051186,GO:0051188,GO:0071704,GO:0090407,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	0.0
EggNOG OGs	COG0021@1\|root,KOG0523@2759\|Eukaryota
EC	2.2.1.1,2.2.1.7
Description	transketolase activity
COG category	G
BiGG Reaction	iRC1080.CRv4_Au5_s7_g14558_t1
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3473	Ggra3473	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 287053..289299 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3473.t1.stop1	Ggra3473.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 287053..287055 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3473.t1.CDS1	Ggra3473.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 287053..289299 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3473.t1.exon1	Ggra3473.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 287053..289299 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3473.t1.start1	Ggra3473.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 289297..289299 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3473.t1	Ggra3473.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 287053..289299 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:287053..289299-
coding sequence from alignment at tig00000059_pilon:287053..289299-

mRNA sequence

>Ggra3473.t1 ID=Ggra3473.t1|Name=Ggra3473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=749bp
MADMARTNRASCFVPALLPSSSSLSSSSFTPSLQRHQFASHPVRTRAHPR
PLPHNPVTKCSADPPAKYRGPRATPLLDSISTPADLRRLRAADLRALAYE
LRWDVLRTVSATGGHLGASLGVIELTIALHYVFNTPHDRLIWDVSHQAYP
HKILTGRRHRMHTLRKNGGLSGFTKRAESEYDPFGAGHSSTSISAGLGMQ
VARDVAGVPGLSIAVIGDGALTGGQAYEAMNNAGYLKNRFIVILNDNAQV
SLPTGTKSVAGVRPSGALSDYSSRVLSSRPFQDLRGAAKNLSRLFPEGIQ
DVAAQVDEIGRGFLSQGGTLFEQLGFYYVGPIDGHKLDVLVKVLENVRDM
PGNKPVLIHVKTDKGKGYPPAEAALDKYHGVARFDVSTGKQHKSVSKTPS
YTSVFANALVAHADKDRKILAITAAMPGGTGLNVFGEVHPTRCHDVGIAE
QHAVTMAAGMACEGFKPFCCIYSTFLQRGYDQLVHDVALQKLPVRFILDR
AGLVGNDGPTHHGTFDLAYIGCIPHMVIMAPSDETELQNMVATALKIDDG
PSVVRYPRGVGVGLDVINSKFGGNFLEMPTRGYPLPIGRGRIIRRAGPHS
GRKGSVAILSLGTRLLEAVNACDILQEFDVSVTVADARFMKPLDRELIRG
LASTHEVMITIEEGSIGGFGDHVLHFLALEGLLDDGSVKFRPMVLPDRFI
DHGSQSEQYEEAGLTAKHVQATAMRLLGRSSEMMVVSSSSLDQNIAGN*

spliced messenger RNA

>Ggra3473.t1 ID=Ggra3473.t1|Name=Ggra3473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00000059_pilon:287053..289299- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATATGGCCCGTACCAATCGCGCCAGCTGCTTCGTGCCGGCTTT
GCTTCCGTCGTCCTCTTCCCTAAGCTCCTCCTCCTTCACACCTTCCTTAC
AACGTCATCAATTCGCCTCGCACCCCGTTCGCACCCGCGCGCATCCGCGC
CCCCTCCCCCACAACCCCGTCACCAAATGTTCGGCAGATCCGCCCGCAAA
GTACCGCGGCCCGCGCGCCACCCCGTTGCTGGACTCCATCTCCACCCCGG
CTGACCTACGTCGCCTCCGTGCGGCCGATCTACGCGCGCTTGCGTACGAG
CTGCGCTGGGATGTGCTCCGCACCGTGTCCGCTACTGGCGGCCATCTCGG
CGCCTCTCTCGGCGTCATCGAGCTCACCATCGCGCTTCATTACGTCTTCA
ACACCCCGCACGACCGTCTCATCTGGGACGTGTCCCACCAGGCGTATCCG
CACAAGATTCTCACCGGCCGTCGTCACCGCATGCACACGCTGCGCAAGAA
CGGCGGCCTGTCGGGCTTCACCAAGCGCGCTGAGAGTGAGTACGATCCGT
TTGGCGCCGGCCATTCTTCCACCAGCATTAGCGCCGGCTTGGGCATGCAG
GTGGCGAGAGATGTTGCCGGTGTGCCCGGCTTGTCCATCGCCGTCATTGG
CGACGGCGCGCTTACGGGCGGACAGGCATACGAAGCTATGAACAACGCGG
GTTATTTGAAGAATCGCTTCATCGTCATTTTGAACGATAATGCGCAGGTG
TCGTTGCCTACTGGAACCAAATCCGTTGCGGGTGTGCGCCCTTCTGGCGC
GCTCAGCGATTATTCTAGCCGTGTGTTGTCGTCGAGACCATTCCAAGACC
TTCGTGGCGCTGCGAAGAACCTCTCTAGGCTATTCCCAGAAGGCATTCAG
GACGTGGCCGCACAGGTTGATGAGATTGGACGTGGCTTCTTGTCGCAGGG
TGGAACTCTGTTTGAGCAGCTTGGTTTCTATTATGTCGGTCCTATTGACG
GCCACAAGCTTGATGTGCTTGTGAAGGTGTTGGAGAACGTTCGTGATATG
CCCGGTAATAAACCGGTTTTGATTCATGTGAAGACCGACAAGGGCAAGGG
ATATCCACCAGCGGAAGCTGCGTTGGATAAGTATCACGGCGTGGCTCGAT
TTGACGTCTCCACTGGCAAGCAACACAAGTCGGTTTCAAAGACGCCTTCC
TACACTTCTGTATTCGCAAACGCATTGGTAGCGCACGCAGACAAGGATCG
CAAGATTCTTGCCATTACCGCCGCAATGCCCGGGGGAACTGGACTCAATG
TTTTCGGAGAAGTTCATCCTACTAGGTGTCATGACGTGGGCATTGCCGAA
CAGCACGCGGTTACAATGGCCGCTGGTATGGCGTGTGAGGGATTCAAGCC
GTTTTGTTGCATCTACTCTACCTTCCTACAGAGGGGGTATGACCAACTTG
TTCACGATGTTGCGTTGCAAAAGTTGCCTGTCAGATTCATACTGGATCGT
GCCGGTCTTGTTGGAAATGATGGTCCAACTCATCATGGAACATTTGATTT
GGCGTACATTGGCTGCATTCCACACATGGTCATCATGGCACCGTCGGACG
AGACGGAGCTGCAAAACATGGTTGCCACCGCTCTCAAGATCGACGATGGA
CCGTCTGTGGTGCGGTACCCGCGCGGGGTGGGTGTTGGTCTTGACGTGAT
CAATTCCAAGTTTGGCGGAAACTTTCTGGAGATGCCTACAAGGGGATATC
CGTTACCGATTGGACGCGGTCGCATCATCCGTCGCGCCGGCCCACACAGC
GGGAGGAAGGGATCTGTGGCCATTCTCAGCCTGGGCACGCGTCTGTTAGA
GGCTGTGAATGCGTGCGATATCCTACAAGAGTTTGATGTCTCCGTGACAG
TGGCCGATGCGCGCTTCATGAAGCCGCTGGATCGCGAGCTGATCCGCGGG
CTGGCGTCGACGCACGAGGTGATGATCACCATTGAAGAGGGCTCTATCGG
CGGGTTTGGTGATCACGTGCTGCACTTCTTGGCGCTGGAGGGATTGCTGG
ATGATGGGTCTGTCAAGTTTAGGCCGATGGTGCTGCCGGACCGCTTCATT
GACCATGGCAGCCAATCGGAGCAGTATGAGGAGGCGGGGCTGACGGCCAA
GCATGTGCAGGCGACCGCTATGCGGCTGCTGGGGCGCTCATCGGAGATGA
TGGTGGTTTCGTCTTCCTCACTGGATCAGAACATTGCGGGCAACTGA

protein sequence of Ggra3473.t1

>Ggra3473.t1 ID=Ggra3473.t1|Name=Ggra3473.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=749bp
MADMARTNRASCFVPALLPSSSSLSSSSFTPSLQRHQFASHPVRTRAHPR
PLPHNPVTKCSADPPAKYRGPRATPLLDSISTPADLRRLRAADLRALAYE
LRWDVLRTVSATGGHLGASLGVIELTIALHYVFNTPHDRLIWDVSHQAYP
HKILTGRRHRMHTLRKNGGLSGFTKRAESEYDPFGAGHSSTSISAGLGMQ
VARDVAGVPGLSIAVIGDGALTGGQAYEAMNNAGYLKNRFIVILNDNAQV
SLPTGTKSVAGVRPSGALSDYSSRVLSSRPFQDLRGAAKNLSRLFPEGIQ
DVAAQVDEIGRGFLSQGGTLFEQLGFYYVGPIDGHKLDVLVKVLENVRDM
PGNKPVLIHVKTDKGKGYPPAEAALDKYHGVARFDVSTGKQHKSVSKTPS
YTSVFANALVAHADKDRKILAITAAMPGGTGLNVFGEVHPTRCHDVGIAE
QHAVTMAAGMACEGFKPFCCIYSTFLQRGYDQLVHDVALQKLPVRFILDR
AGLVGNDGPTHHGTFDLAYIGCIPHMVIMAPSDETELQNMVATALKIDDG
PSVVRYPRGVGVGLDVINSKFGGNFLEMPTRGYPLPIGRGRIIRRAGPHS
GRKGSVAILSLGTRLLEAVNACDILQEFDVSVTVADARFMKPLDRELIRG
LASTHEVMITIEEGSIGGFGDHVLHFLALEGLLDDGSVKFRPMVLPDRFI
DHGSQSEQYEEAGLTAKHVQATAMRLLGRSSEMMVVSSSSLDQNIAGN*

mRNA from alignment at tig00000059_pilon:287053..289299-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3473.t1 ID=Ggra3473.t1|Name=Ggra3473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00000059_pilon:287053..289299- (Gracilaria gracilis GNS1m male)
ATGGCTGATATGGCCCGTACCAATCGCGCCAGCTGCTTCGTGCCGGCTTT
GCTTCCGTCGTCCTCTTCCCTAAGCTCCTCCTCCTTCACACCTTCCTTAC
AACGTCATCAATTCGCCTCGCACCCCGTTCGCACCCGCGCGCATCCGCGC
CCCCTCCCCCACAACCCCGTCACCAAATGTTCGGCAGATCCGCCCGCAAA
GTACCGCGGCCCGCGCGCCACCCCGTTGCTGGACTCCATCTCCACCCCGG
CTGACCTACGTCGCCTCCGTGCGGCCGATCTACGCGCGCTTGCGTACGAG
CTGCGCTGGGATGTGCTCCGCACCGTGTCCGCTACTGGCGGCCATCTCGG
CGCCTCTCTCGGCGTCATCGAGCTCACCATCGCGCTTCATTACGTCTTCA
ACACCCCGCACGACCGTCTCATCTGGGACGTGTCCCACCAGGCGTATCCG
CACAAGATTCTCACCGGCCGTCGTCACCGCATGCACACGCTGCGCAAGAA
CGGCGGCCTGTCGGGCTTCACCAAGCGCGCTGAGAGTGAGTACGATCCGT
TTGGCGCCGGCCATTCTTCCACCAGCATTAGCGCCGGCTTGGGCATGCAG
GTGGCGAGAGATGTTGCCGGTGTGCCCGGCTTGTCCATCGCCGTCATTGG
CGACGGCGCGCTTACGGGCGGACAGGCATACGAAGCTATGAACAACGCGG
GTTATTTGAAGAATCGCTTCATCGTCATTTTGAACGATAATGCGCAGGTG
TCGTTGCCTACTGGAACCAAATCCGTTGCGGGTGTGCGCCCTTCTGGCGC
GCTCAGCGATTATTCTAGCCGTGTGTTGTCGTCGAGACCATTCCAAGACC
TTCGTGGCGCTGCGAAGAACCTCTCTAGGCTATTCCCAGAAGGCATTCAG
GACGTGGCCGCACAGGTTGATGAGATTGGACGTGGCTTCTTGTCGCAGGG
TGGAACTCTGTTTGAGCAGCTTGGTTTCTATTATGTCGGTCCTATTGACG
GCCACAAGCTTGATGTGCTTGTGAAGGTGTTGGAGAACGTTCGTGATATG
CCCGGTAATAAACCGGTTTTGATTCATGTGAAGACCGACAAGGGCAAGGG
ATATCCACCAGCGGAAGCTGCGTTGGATAAGTATCACGGCGTGGCTCGAT
TTGACGTCTCCACTGGCAAGCAACACAAGTCGGTTTCAAAGACGCCTTCC
TACACTTCTGTATTCGCAAACGCATTGGTAGCGCACGCAGACAAGGATCG
CAAGATTCTTGCCATTACCGCCGCAATGCCCGGGGGAACTGGACTCAATG
TTTTCGGAGAAGTTCATCCTACTAGGTGTCATGACGTGGGCATTGCCGAA
CAGCACGCGGTTACAATGGCCGCTGGTATGGCGTGTGAGGGATTCAAGCC
GTTTTGTTGCATCTACTCTACCTTCCTACAGAGGGGGTATGACCAACTTG
TTCACGATGTTGCGTTGCAAAAGTTGCCTGTCAGATTCATACTGGATCGT
GCCGGTCTTGTTGGAAATGATGGTCCAACTCATCATGGAACATTTGATTT
GGCGTACATTGGCTGCATTCCACACATGGTCATCATGGCACCGTCGGACG
AGACGGAGCTGCAAAACATGGTTGCCACCGCTCTCAAGATCGACGATGGA
CCGTCTGTGGTGCGGTACCCGCGCGGGGTGGGTGTTGGTCTTGACGTGAT
CAATTCCAAGTTTGGCGGAAACTTTCTGGAGATGCCTACAAGGGGATATC
CGTTACCGATTGGACGCGGTCGCATCATCCGTCGCGCCGGCCCACACAGC
GGGAGGAAGGGATCTGTGGCCATTCTCAGCCTGGGCACGCGTCTGTTAGA
GGCTGTGAATGCGTGCGATATCCTACAAGAGTTTGATGTCTCCGTGACAG
TGGCCGATGCGCGCTTCATGAAGCCGCTGGATCGCGAGCTGATCCGCGGG
CTGGCGTCGACGCACGAGGTGATGATCACCATTGAAGAGGGCTCTATCGG
CGGGTTTGGTGATCACGTGCTGCACTTCTTGGCGCTGGAGGGATTGCTGG
ATGATGGGTCTGTCAAGTTTAGGCCGATGGTGCTGCCGGACCGCTTCATT
GACCATGGCAGCCAATCGGAGCAGTATGAGGAGGCGGGGCTGACGGCCAA
GCATGTGCAGGCGACCGCTATGCGGCTGCTGGGGCGCTCATCGGAGATGA
TGGTGGTTTCGTCTTCCTCACTGGATCAGAACATTGCGGGCAACTGA

Coding sequence (CDS) from alignment at tig00000059_pilon:287053..289299-

>Ggra3473.t1 ID=Ggra3473.t1|Name=Ggra3473.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2247bp|location=Sequence derived from alignment at tig00000059_pilon:287053..289299- (Gracilaria gracilis GNS1m male)
ATGGCTGATATGGCCCGTACCAATCGCGCCAGCTGCTTCGTGCCGGCTTT
GCTTCCGTCGTCCTCTTCCCTAAGCTCCTCCTCCTTCACACCTTCCTTAC
AACGTCATCAATTCGCCTCGCACCCCGTTCGCACCCGCGCGCATCCGCGC
CCCCTCCCCCACAACCCCGTCACCAAATGTTCGGCAGATCCGCCCGCAAA
GTACCGCGGCCCGCGCGCCACCCCGTTGCTGGACTCCATCTCCACCCCGG
CTGACCTACGTCGCCTCCGTGCGGCCGATCTACGCGCGCTTGCGTACGAG
CTGCGCTGGGATGTGCTCCGCACCGTGTCCGCTACTGGCGGCCATCTCGG
CGCCTCTCTCGGCGTCATCGAGCTCACCATCGCGCTTCATTACGTCTTCA
ACACCCCGCACGACCGTCTCATCTGGGACGTGTCCCACCAGGCGTATCCG
CACAAGATTCTCACCGGCCGTCGTCACCGCATGCACACGCTGCGCAAGAA
CGGCGGCCTGTCGGGCTTCACCAAGCGCGCTGAGAGTGAGTACGATCCGT
TTGGCGCCGGCCATTCTTCCACCAGCATTAGCGCCGGCTTGGGCATGCAG
GTGGCGAGAGATGTTGCCGGTGTGCCCGGCTTGTCCATCGCCGTCATTGG
CGACGGCGCGCTTACGGGCGGACAGGCATACGAAGCTATGAACAACGCGG
GTTATTTGAAGAATCGCTTCATCGTCATTTTGAACGATAATGCGCAGGTG
TCGTTGCCTACTGGAACCAAATCCGTTGCGGGTGTGCGCCCTTCTGGCGC
GCTCAGCGATTATTCTAGCCGTGTGTTGTCGTCGAGACCATTCCAAGACC
TTCGTGGCGCTGCGAAGAACCTCTCTAGGCTATTCCCAGAAGGCATTCAG
GACGTGGCCGCACAGGTTGATGAGATTGGACGTGGCTTCTTGTCGCAGGG
TGGAACTCTGTTTGAGCAGCTTGGTTTCTATTATGTCGGTCCTATTGACG
GCCACAAGCTTGATGTGCTTGTGAAGGTGTTGGAGAACGTTCGTGATATG
CCCGGTAATAAACCGGTTTTGATTCATGTGAAGACCGACAAGGGCAAGGG
ATATCCACCAGCGGAAGCTGCGTTGGATAAGTATCACGGCGTGGCTCGAT
TTGACGTCTCCACTGGCAAGCAACACAAGTCGGTTTCAAAGACGCCTTCC
TACACTTCTGTATTCGCAAACGCATTGGTAGCGCACGCAGACAAGGATCG
CAAGATTCTTGCCATTACCGCCGCAATGCCCGGGGGAACTGGACTCAATG
TTTTCGGAGAAGTTCATCCTACTAGGTGTCATGACGTGGGCATTGCCGAA
CAGCACGCGGTTACAATGGCCGCTGGTATGGCGTGTGAGGGATTCAAGCC
GTTTTGTTGCATCTACTCTACCTTCCTACAGAGGGGGTATGACCAACTTG
TTCACGATGTTGCGTTGCAAAAGTTGCCTGTCAGATTCATACTGGATCGT
GCCGGTCTTGTTGGAAATGATGGTCCAACTCATCATGGAACATTTGATTT
GGCGTACATTGGCTGCATTCCACACATGGTCATCATGGCACCGTCGGACG
AGACGGAGCTGCAAAACATGGTTGCCACCGCTCTCAAGATCGACGATGGA
CCGTCTGTGGTGCGGTACCCGCGCGGGGTGGGTGTTGGTCTTGACGTGAT
CAATTCCAAGTTTGGCGGAAACTTTCTGGAGATGCCTACAAGGGGATATC
CGTTACCGATTGGACGCGGTCGCATCATCCGTCGCGCCGGCCCACACAGC
GGGAGGAAGGGATCTGTGGCCATTCTCAGCCTGGGCACGCGTCTGTTAGA
GGCTGTGAATGCGTGCGATATCCTACAAGAGTTTGATGTCTCCGTGACAG
TGGCCGATGCGCGCTTCATGAAGCCGCTGGATCGCGAGCTGATCCGCGGG
CTGGCGTCGACGCACGAGGTGATGATCACCATTGAAGAGGGCTCTATCGG
CGGGTTTGGTGATCACGTGCTGCACTTCTTGGCGCTGGAGGGATTGCTGG
ATGATGGGTCTGTCAAGTTTAGGCCGATGGTGCTGCCGGACCGCTTCATT
GACCATGGCAGCCAATCGGAGCAGTATGAGGAGGCGGGGCTGACGGCCAA
GCATGTGCAGGCGACCGCTATGCGGCTGCTGGGGCGCTCATCGGAGATGA
TGGTGGTTTCGTCTTCCTCACTGGATCAGAACATTGCGGGCAACTGA