Ggra3452.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3452.t1
Unique NameGgra3452.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:157926..159547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G1I4
Preferred nameFLOT2
PFAMsBand_7,Flot
Max annot lvl2759|Eukaryota
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Evalue1.44e-47
EggNOG OGsCOG2268@1|root,KOG2668@2759|Eukaryota
Descriptionprotein localization to membrane raft
COG categoryU
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3452Ggra3452Gracilaria gracilis GNS1m malegenetig00000059_pilon 157926..159547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3452.t1Ggra3452.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 157926..159547 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3452.t1.start1Ggra3452.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 157926..157928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3452.t1.CDS1Ggra3452.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 157926..159187 +
Ggra3452.t1.CDS2Ggra3452.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 159280..159547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3452.t1.exon1Ggra3452.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 157926..159187 +
Ggra3452.t1.exon2Ggra3452.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 159280..159547 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3452.t1.intron1Ggra3452.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 159188..159279 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3452.t1.stop1Ggra3452.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 159545..159547 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3452.t1 ID=Ggra3452.t1|Name=Ggra3452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MPSFLRGFVYTAGPNTALIKSSGNKHVSVIIGGRMFAIPFLQRVDRLGLE
LRTITVHTEHGTTVNGVSVNVTSCCQVKIQGWSTNEDEGDELPPHHARVG
GDLHMDQSAIRLAAQHFIGKRDSEIEDSIQKTVAGHQRSIIGSLTVEELY
RDRATFSRRVLELCHNDMRNMGLTIVSYTVAEIADDNGYIEALGVAPTEN
VKRGAVEGRATHQNEAAARKTVEETKAEVKMNEQQQIKIVSNQETKIKKA
EAQKEVDKHIAAQNKAFDIADADQDKILLVRKKEAKAAEAQAELEVMRQF
VEKERLLKEQNVHVEADAKLYKARVDADGVRATAAADAEKIRLLGNAEAE
KQSVILERVGIARAEVEAEKIKRTGDATADVIRAKGAAEVEVELKRAEAL
RAKGMAENDVLQRRLQIWQEHANYGVLLEKMIDMMPQVAGSLAEPLAKTE
KMVFVSGGSGSGSGPSQFTREMTRMVAEVPEAIQALTNCDIRQGLANLAN
GKVANKLTG*
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spliced messenger RNA

>Ggra3452.t1 ID=Ggra3452.t1|Name=Ggra3452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000059_pilon:157926..159547+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCCTTTCTGCGCGGCTTCGTATACACGGCTGGGCCGAACACCGC
CCTCATCAAGTCGTCTGGTAACAAACATGTGTCAGTCATTATTGGTGGTC
GAATGTTCGCCATCCCCTTCCTGCAACGCGTCGACAGGTTGGGCTTGGAA
CTGCGCACCATCACAGTACACACCGAGCACGGTACCACCGTCAACGGAGT
CAGTGTCAACGTTACGTCGTGTTGCCAGGTCAAGATTCAGGGATGGTCTA
CCAATGAAGATGAAGGCGATGAACTTCCCCCCCATCACGCCCGCGTCGGA
GGTGACTTGCATATGGACCAATCCGCCATTCGACTGGCTGCGCAGCACTT
CATAGGCAAGAGGGACTCGGAGATTGAGGACTCCATCCAGAAGACTGTTG
CTGGCCATCAGCGCTCTATCATTGGTTCCTTGACAGTCGAAGAGCTCTAC
CGCGACCGTGCTACCTTTTCACGACGCGTTTTGGAGCTATGTCACAATGA
TATGAGAAACATGGGCCTGACCATTGTGTCGTACACTGTTGCTGAGATTG
CCGACGATAATGGCTATATAGAGGCTCTTGGAGTTGCCCCCACTGAAAAT
GTGAAGAGAGGTGCTGTGGAAGGGCGTGCTACCCACCAAAACGAGGCTGC
TGCGCGGAAAACAGTGGAGGAAACCAAGGCTGaagtcaagatgaacgaac
aacaacagatcaaaattgtgtctaatcaggagaccaagatcaagaAGGCC
GAGGCACAGAAAGAAGTTGACAAGCATATAGCAGCTCAGAACAAGGCCTT
CGACATTGCAGACGCTGACCAAGACAAGATTCTGCTCGTTCGGAAGAAGG
AAGCAAAGGCCGCTGAAGCACAAGCAGAACTGGAAGTAATGAGGCAATTC
GTTGAAAAGGAACGCTTACTGAAGGAACAAAACGTGCATGTGGAAGCTGA
TGCGAAGCTGTACAAGGCTAGAGTTGATGCCGATGGCGTGCGAGCTACCG
CTGCAGCGGACGCCGAGAAGATTCGACTTCTGGGAAATGCTGAGGCAGAG
AAACAAAGCGTTATTCTAGAGAGAGTTGGTATTGCTAGGGCCGAAGTTGA
AGCCGAGAAAATCAAGCGGACAGGTGACGCAACAGCAGATGTGATTCGCG
CCAAAGGCGCTGCGGAGGTGGAAGTTGAACTGAAAAGAGCTGAAGCGCTT
CGTGCGAAAGGAATGGCCGAGAATGATGTGTTGCAGAGAAGACTTCAAAT
CTGGCAAGAACATGCGAACTACGGCGTGCTTCTCGAAAAGATGATCGACA
TGATGCCTCAAGTGGCCGGCTCGTTGGCCGAGCCGTTGGCCAAGACGGAG
AAGATGGTGTTCGTGAGCGGCGGAAGCGGCAGCGGAAGTGGACCCTCTCA
GTTTACTCGTGAAATGACTCGTATGGTGGCAGAGGTACCTGAAGCGATTC
AGGCTCTGACTAATTGTGATATCCGACAGGGATTAGCAAATTTGGCGAAT
GGGAAGGTCGCGAACAAGTTGACCGGCTGA
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protein sequence of Ggra3452.t1

>Ggra3452.t1 ID=Ggra3452.t1|Name=Ggra3452.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MPSFLRGFVYTAGPNTALIKSSGNKHVSVIIGGRMFAIPFLQRVDRLGLE
LRTITVHTEHGTTVNGVSVNVTSCCQVKIQGWSTNEDEGDELPPHHARVG
GDLHMDQSAIRLAAQHFIGKRDSEIEDSIQKTVAGHQRSIIGSLTVEELY
RDRATFSRRVLELCHNDMRNMGLTIVSYTVAEIADDNGYIEALGVAPTEN
VKRGAVEGRATHQNEAAARKTVEETKAEVKMNEQQQIKIVSNQETKIKKA
EAQKEVDKHIAAQNKAFDIADADQDKILLVRKKEAKAAEAQAELEVMRQF
VEKERLLKEQNVHVEADAKLYKARVDADGVRATAAADAEKIRLLGNAEAE
KQSVILERVGIARAEVEAEKIKRTGDATADVIRAKGAAEVEVELKRAEAL
RAKGMAENDVLQRRLQIWQEHANYGVLLEKMIDMMPQVAGSLAEPLAKTE
KMVFVSGGSGSGSGPSQFTREMTRMVAEVPEAIQALTNCDIRQGLANLAN
GKVANKLTG*
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mRNA from alignment at tig00000059_pilon:157926..159547+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3452.t1 ID=Ggra3452.t1|Name=Ggra3452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1622bp|location=Sequence derived from alignment at tig00000059_pilon:157926..159547+ (Gracilaria gracilis GNS1m male)
ATGCCTTCCTTTCTGCGCGGCTTCGTATACACGGCTGGGCCGAACACCGC
CCTCATCAAGTCGTCTGGTAACAAACATGTGTCAGTCATTATTGGTGGTC
GAATGTTCGCCATCCCCTTCCTGCAACGCGTCGACAGGTTGGGCTTGGAA
CTGCGCACCATCACAGTACACACCGAGCACGGTACCACCGTCAACGGAGT
CAGTGTCAACGTTACGTCGTGTTGCCAGGTCAAGATTCAGGGATGGTCTA
CCAATGAAGATGAAGGCGATGAACTTCCCCCCCATCACGCCCGCGTCGGA
GGTGACTTGCATATGGACCAATCCGCCATTCGACTGGCTGCGCAGCACTT
CATAGGCAAGAGGGACTCGGAGATTGAGGACTCCATCCAGAAGACTGTTG
CTGGCCATCAGCGCTCTATCATTGGTTCCTTGACAGTCGAAGAGCTCTAC
CGCGACCGTGCTACCTTTTCACGACGCGTTTTGGAGCTATGTCACAATGA
TATGAGAAACATGGGCCTGACCATTGTGTCGTACACTGTTGCTGAGATTG
CCGACGATAATGGCTATATAGAGGCTCTTGGAGTTGCCCCCACTGAAAAT
GTGAAGAGAGGTGCTGTGGAAGGGCGTGCTACCCACCAAAACGAGGCTGC
TGCGCGGAAAACAGTGGAGGAAACCAAGGCTGaagtcaagatgaacgaac
aacaacagatcaaaattgtgtctaatcaggagaccaagatcaagaAGGCC
GAGGCACAGAAAGAAGTTGACAAGCATATAGCAGCTCAGAACAAGGCCTT
CGACATTGCAGACGCTGACCAAGACAAGATTCTGCTCGTTCGGAAGAAGG
AAGCAAAGGCCGCTGAAGCACAAGCAGAACTGGAAGTAATGAGGCAATTC
GTTGAAAAGGAACGCTTACTGAAGGAACAAAACGTGCATGTGGAAGCTGA
TGCGAAGCTGTACAAGGCTAGAGTTGATGCCGATGGCGTGCGAGCTACCG
CTGCAGCGGACGCCGAGAAGATTCGACTTCTGGGAAATGCTGAGGCAGAG
AAACAAAGCGTTATTCTAGAGAGAGTTGGTATTGCTAGGGCCGAAGTTGA
AGCCGAGAAAATCAAGCGGACAGGTGACGCAACAGCAGATGTGATTCGCG
CCAAAGGCGCTGCGGAGGTGGAAGTTGAACTGAAAAGAGCTGAAGCGCTT
CGTGCGAAAGGAATGGCCGAGAATGATGTGTTGCAGAGAAGACTTCAAAT
CTGGCAAGAACAGTACGTTATCCTCTTCTCATTTGTTGATGAACCTTCCC
CTTGGAACATCACATTCATTACTGACAACGATATTTTTTTTGTGTTTTGT
ACAGTGCGAACTACGGCGTGCTTCTCGAAAAGATGATCGACATGATGCCT
CAAGTGGCCGGCTCGTTGGCCGAGCCGTTGGCCAAGACGGAGAAGATGGT
GTTCGTGAGCGGCGGAAGCGGCAGCGGAAGTGGACCCTCTCAGTTTACTC
GTGAAATGACTCGTATGGTGGCAGAGGTACCTGAAGCGATTCAGGCTCTG
ACTAATTGTGATATCCGACAGGGATTAGCAAATTTGGCGAATGGGAAGGT
CGCGAACAAGTTGACCGGCTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:157926..159547+

>Ggra3452.t1 ID=Ggra3452.t1|Name=Ggra3452.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000059_pilon:157926..159547+ (Gracilaria gracilis GNS1m male)
ATGCCTTCCTTTCTGCGCGGCTTCGTATACACGGCTGGGCCGAACACCGC
CCTCATCAAGTCGTCTGGTAACAAACATGTGTCAGTCATTATTGGTGGTC
GAATGTTCGCCATCCCCTTCCTGCAACGCGTCGACAGGTTGGGCTTGGAA
CTGCGCACCATCACAGTACACACCGAGCACGGTACCACCGTCAACGGAGT
CAGTGTCAACGTTACGTCGTGTTGCCAGGTCAAGATTCAGGGATGGTCTA
CCAATGAAGATGAAGGCGATGAACTTCCCCCCCATCACGCCCGCGTCGGA
GGTGACTTGCATATGGACCAATCCGCCATTCGACTGGCTGCGCAGCACTT
CATAGGCAAGAGGGACTCGGAGATTGAGGACTCCATCCAGAAGACTGTTG
CTGGCCATCAGCGCTCTATCATTGGTTCCTTGACAGTCGAAGAGCTCTAC
CGCGACCGTGCTACCTTTTCACGACGCGTTTTGGAGCTATGTCACAATGA
TATGAGAAACATGGGCCTGACCATTGTGTCGTACACTGTTGCTGAGATTG
CCGACGATAATGGCTATATAGAGGCTCTTGGAGTTGCCCCCACTGAAAAT
GTGAAGAGAGGTGCTGTGGAAGGGCGTGCTACCCACCAAAACGAGGCTGC
TGCGCGGAAAACAGTGGAGGAAACCAAGGCTGaagtcaagatgaacgaac
aacaacagatcaaaattgtgtctaatcaggagaccaagatcaagaAGGCC
GAGGCACAGAAAGAAGTTGACAAGCATATAGCAGCTCAGAACAAGGCCTT
CGACATTGCAGACGCTGACCAAGACAAGATTCTGCTCGTTCGGAAGAAGG
AAGCAAAGGCCGCTGAAGCACAAGCAGAACTGGAAGTAATGAGGCAATTC
GTTGAAAAGGAACGCTTACTGAAGGAACAAAACGTGCATGTGGAAGCTGA
TGCGAAGCTGTACAAGGCTAGAGTTGATGCCGATGGCGTGCGAGCTACCG
CTGCAGCGGACGCCGAGAAGATTCGACTTCTGGGAAATGCTGAGGCAGAG
AAACAAAGCGTTATTCTAGAGAGAGTTGGTATTGCTAGGGCCGAAGTTGA
AGCCGAGAAAATCAAGCGGACAGGTGACGCAACAGCAGATGTGATTCGCG
CCAAAGGCGCTGCGGAGGTGGAAGTTGAACTGAAAAGAGCTGAAGCGCTT
CGTGCGAAAGGAATGGCCGAGAATGATGTGTTGCAGAGAAGACTTCAAAT
CTGGCAAGAACATGCGAACTACGGCGTGCTTCTCGAAAAGATGATCGACA
TGATGCCTCAAGTGGCCGGCTCGTTGGCCGAGCCGTTGGCCAAGACGGAG
AAGATGGTGTTCGTGAGCGGCGGAAGCGGCAGCGGAAGTGGACCCTCTCA
GTTTACTCGTGAAATGACTCGTATGGTGGCAGAGGTACCTGAAGCGATTC
AGGCTCTGACTAATTGTGATATCCGACAGGGATTAGCAAATTTGGCGAAT
GGGAAGGTCGCGAACAAGTTGACCGGCTGA
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