Ggra3446.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3446.t1
Unique NameGgra3446.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:145705..146626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707149.1
Preferred namePSMA7
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K01191,ko:K02731
KEGG Pathwayko00511,ko03050,map00511,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005819,GO:0005829,GO:0005839,GO:0005840,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009524,GO:0009536,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030071,GO:0030163,GO:0031090,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0036211,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044464,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0098588,GO:0098794,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:1990904,GO:2001252
Evalue1.47e-122
EggNOG OGsCOG0638@1|root,KOG0183@2759|Eukaryota
EC3.2.1.24,3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
CAZyGH38
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3446Ggra3446Gracilaria gracilis GNS1m malegenetig00000059_pilon 145705..146626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3446.t1Ggra3446.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 145705..146626 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3446.t1.stop1Ggra3446.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 145705..145707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3446.t1.CDS1Ggra3446.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 145705..146373 -
Ggra3446.t1.CDS2Ggra3446.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 146528..146626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3446.t1.exon1Ggra3446.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 145705..146373 -
Ggra3446.t1.exon2Ggra3446.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 146528..146626 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3446.t1.intron1Ggra3446.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 146374..146527 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3446.t1.start1Ggra3446.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 146624..146626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3446.t1 ID=Ggra3446.t1|Name=Ggra3446.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=256bp
MSRYDRAITVFSPDGHLFQVEYALEAVRKGSTAVGIRGDNVIVLAVEKKS
TAKLQDARTVRKTARIDERICLAFAGLTADARVLINKARKECQSYRLMVE
DAPSVDYISRYIATTQQRYTQSGGVRPFGISTLIIGFDSDGTPRLFQTDP
SGLFSEWKANAIGRNSKTVLEFLEKKYKECVVDVPKEKADNETIKLAIKA
MLEVVESSHKNIEVTLMYRDSGVKVLEEKEVEALVTAVEAEKTEAEEKKK
PSSKK*
back to top

spliced messenger RNA

>Ggra3446.t1 ID=Ggra3446.t1|Name=Ggra3446.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000059_pilon:145705..146626- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCTACGATCGAGCAATTACGGTGTTCTCACCGGATGGTCATCT
GTTTCAGGTCGAATACGCTCTGGAGGCCGTGCGCAAGGGATCAACAGCGG
TTGGTATCCGTGGTGATAATGTGATCGTCTTAGCTGTAGAGAAGAAAAGC
ACAGCAAAACTTCAAGACGCTCGCACTGTTCGCAAAACTGCTCGTATCGA
TGAGCGAATTTGTCTAGCGTTTGCTGGACTTACGGCGGATGCTCGCGTGC
TCATCAACAAAGCTCGAAAGGAATGCCAAAGTTATCGTCTAATGGTTGAA
GATGCTCCCAGCGTTGATTACATCTCTCGTTATATTGCCACAACTCAACA
ACGATACACACAAAGCGGTGGTGTTCGACCTTTTGGTATTAGTACATTGA
TCATCGGTTTTGATTCGGATGGAACACCACGCCTTTTCCAAACAGATCCA
TCCGGACTATTCTCAGAATGGAAAGCAAATGCTATTGGCCGTAACTCTAA
AACTGTGTTAGAGTTCTTGGAGAAGAAATATAAAGAGTGTGTCGTTGACG
TACCGAAAGAGAAAGCTGATAATGAGACCATTAAATTGGCTATTAAGGCT
ATGTTGGAGGTTGTGGAGAGTTCGCACAAGAACATTGAAGTTACTTTAAT
GTATCGGGATTCGGGGGTGAAGGTTTTGGAAGAGAAAGAAGTAGAAGCTT
TGGTCACCGCTGTAGAAGCTGAAAAGACAGAAGCTGAGGAGAAGAAGAAG
CCATCCTCAAAGAAGTAA
back to top

protein sequence of Ggra3446.t1

>Ggra3446.t1 ID=Ggra3446.t1|Name=Ggra3446.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=256bp
MSRYDRAITVFSPDGHLFQVEYALEAVRKGSTAVGIRGDNVIVLAVEKKS
TAKLQDARTVRKTARIDERICLAFAGLTADARVLINKARKECQSYRLMVE
DAPSVDYISRYIATTQQRYTQSGGVRPFGISTLIIGFDSDGTPRLFQTDP
SGLFSEWKANAIGRNSKTVLEFLEKKYKECVVDVPKEKADNETIKLAIKA
MLEVVESSHKNIEVTLMYRDSGVKVLEEKEVEALVTAVEAEKTEAEEKKK
PSSKK*
back to top

mRNA from alignment at tig00000059_pilon:145705..146626-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3446.t1 ID=Ggra3446.t1|Name=Ggra3446.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=922bp|location=Sequence derived from alignment at tig00000059_pilon:145705..146626- (Gracilaria gracilis GNS1m male)
ATGAGTCGCTACGATCGAGCAATTACGGTGTTCTCACCGGATGGTCATCT
GTTTCAGGTCGAATACGCTCTGGAGGCCGTGCGCAAGGGATCAACAGCGG
TACGTTTAAATTGTTTGCCATCCAACCACCTTGTTGTGAGGTTATTCATT
GAAAGAAGTCTGTCGCTCGTCTGCCTCTCTTCTAGAAGTCAATGTTTAAT
TCATCGATCGTGTATGTGAAAGTACCTAACACTCACCGCTTCTTTTCCAA
TAGGTTGGTATCCGTGGTGATAATGTGATCGTCTTAGCTGTAGAGAAGAA
AAGCACAGCAAAACTTCAAGACGCTCGCACTGTTCGCAAAACTGCTCGTA
TCGATGAGCGAATTTGTCTAGCGTTTGCTGGACTTACGGCGGATGCTCGC
GTGCTCATCAACAAAGCTCGAAAGGAATGCCAAAGTTATCGTCTAATGGT
TGAAGATGCTCCCAGCGTTGATTACATCTCTCGTTATATTGCCACAACTC
AACAACGATACACACAAAGCGGTGGTGTTCGACCTTTTGGTATTAGTACA
TTGATCATCGGTTTTGATTCGGATGGAACACCACGCCTTTTCCAAACAGA
TCCATCCGGACTATTCTCAGAATGGAAAGCAAATGCTATTGGCCGTAACT
CTAAAACTGTGTTAGAGTTCTTGGAGAAGAAATATAAAGAGTGTGTCGTT
GACGTACCGAAAGAGAAAGCTGATAATGAGACCATTAAATTGGCTATTAA
GGCTATGTTGGAGGTTGTGGAGAGTTCGCACAAGAACATTGAAGTTACTT
TAATGTATCGGGATTCGGGGGTGAAGGTTTTGGAAGAGAAAGAAGTAGAA
GCTTTGGTCACCGCTGTAGAAGCTGAAAAGACAGAAGCTGAGGAGAAGAA
GAAGCCATCCTCAAAGAAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000059_pilon:145705..146626-

>Ggra3446.t1 ID=Ggra3446.t1|Name=Ggra3446.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00000059_pilon:145705..146626- (Gracilaria gracilis GNS1m male)
ATGAGTCGCTACGATCGAGCAATTACGGTGTTCTCACCGGATGGTCATCT
GTTTCAGGTCGAATACGCTCTGGAGGCCGTGCGCAAGGGATCAACAGCGG
TTGGTATCCGTGGTGATAATGTGATCGTCTTAGCTGTAGAGAAGAAAAGC
ACAGCAAAACTTCAAGACGCTCGCACTGTTCGCAAAACTGCTCGTATCGA
TGAGCGAATTTGTCTAGCGTTTGCTGGACTTACGGCGGATGCTCGCGTGC
TCATCAACAAAGCTCGAAAGGAATGCCAAAGTTATCGTCTAATGGTTGAA
GATGCTCCCAGCGTTGATTACATCTCTCGTTATATTGCCACAACTCAACA
ACGATACACACAAAGCGGTGGTGTTCGACCTTTTGGTATTAGTACATTGA
TCATCGGTTTTGATTCGGATGGAACACCACGCCTTTTCCAAACAGATCCA
TCCGGACTATTCTCAGAATGGAAAGCAAATGCTATTGGCCGTAACTCTAA
AACTGTGTTAGAGTTCTTGGAGAAGAAATATAAAGAGTGTGTCGTTGACG
TACCGAAAGAGAAAGCTGATAATGAGACCATTAAATTGGCTATTAAGGCT
ATGTTGGAGGTTGTGGAGAGTTCGCACAAGAACATTGAAGTTACTTTAAT
GTATCGGGATTCGGGGGTGAAGGTTTTGGAAGAGAAAGAAGTAGAAGCTT
TGGTCACCGCTGTAGAAGCTGAAAAGACAGAAGCTGAGGAGAAGAAGAAG
CCATCCTCAAAGAAGTAA
back to top