Ggra3487.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3487.t1
Unique NameGgra3487.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:429143..429666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3487Ggra3487Gracilaria gracilis GNS1m malegenetig00000059_pilon 429143..429666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3487.t1Ggra3487.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 429143..429666 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3487.t1.start1Ggra3487.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 429143..429145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3487.t1.CDS1Ggra3487.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 429143..429408 +
Ggra3487.t1.CDS2Ggra3487.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 429573..429666 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3487.t1.exon1Ggra3487.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 429143..429408 +
Ggra3487.t1.exon2Ggra3487.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 429573..429666 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3487.t1.intron1Ggra3487.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 429409..429572 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3487.t1.stop1Ggra3487.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 429664..429666 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3487.t1 ID=Ggra3487.t1|Name=Ggra3487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=120bp
MQMLKWCLPRHIHKPTGLLSILLDMFLSNFVPHGAMDSVIRALRTEVAAH
AATHTDLAPAPAAAAPQPSPQPSPLNVAAGTKCAICLAPNRNAQRFLLTP
NNRTPIGTPPETPHYSDRH*
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spliced messenger RNA

>Ggra3487.t1 ID=Ggra3487.t1|Name=Ggra3487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00000059_pilon:429143..429666+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATGCTCAAGTGGTGCTTGCCGCGCCACATCCACAAGCCCACCGG
CTTGCTGTCCATCTTGCTGGACATGTTTCTGTCCAACTTTGTACCGCATG
GCGCCATGGACTCCGTCATTCGCGCGCTGCGCACCGAGGTGGCTGCGCAC
GCCGCCACGCACACCGATCTggccccggccccggctgcggccgcgccgca
gccgtcgccgcagccttcgccgcTCAACGTGGCCGCAGGCACCAAGTGCG
CCATCTGTCTGGCTCCTAATCGCAATGCTCAACGCTTTCTGCTCACACCA
AATAATCGAACCCCAATCGGAACGCCACCCGAAACTCCTCATTACTCAGA
TCGTCATTAG
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protein sequence of Ggra3487.t1

>Ggra3487.t1 ID=Ggra3487.t1|Name=Ggra3487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=120bp
MQMLKWCLPRHIHKPTGLLSILLDMFLSNFVPHGAMDSVIRALRTEVAAH
AATHTDLAPAPAAAAPQPSPQPSPLNVAAGTKCAICLAPNRNAQRFLLTP
NNRTPIGTPPETPHYSDRH*
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mRNA from alignment at tig00000059_pilon:429143..429666+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3487.t1 ID=Ggra3487.t1|Name=Ggra3487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp|location=Sequence derived from alignment at tig00000059_pilon:429143..429666+ (Gracilaria gracilis GNS1m male)
ATGCAAATGCTCAAGTGGTGCTTGCCGCGCCACATCCACAAGCCCACCGG
CTTGCTGTCCATCTTGCTGGACATGTTTCTGTCCAACTTTGTACCGCATG
GCGCCATGGACTCCGTCATTCGCGCGCTGCGCACCGAGGTGGCTGCGCAC
GCCGCCACGCACACCGATCTggccccggccccggctgcggccgcgccgca
gccgtcgccgcagccttcgccgcTCAACGTGGCCGCAGGCACCAAGTGCG
CCATCTGTCTGGCTCCGTATGAAGTGGGCGATACGTTGCGTCGCCTCCCT
tgtgaccacttgttccacaccgagtgcgtcgatgcatggctcaagagaag
atcCCTATGTCCCATCTGCAAACTGCACGCCTGTTGAATCGCTTGTATTT
CAACAAGCCCCAACTACAATCCTACTACAGTAATCGCAATGCTCAACGCT
TTCTGCTCACACCAAATAATCGAACCCCAATCGGAACGCCACCCGAAACT
CCTCATTACTCAGATCGTCATTAG
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Coding sequence (CDS) from alignment at tig00000059_pilon:429143..429666+

>Ggra3487.t1 ID=Ggra3487.t1|Name=Ggra3487.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=360bp|location=Sequence derived from alignment at tig00000059_pilon:429143..429666+ (Gracilaria gracilis GNS1m male)
ATGCAAATGCTCAAGTGGTGCTTGCCGCGCCACATCCACAAGCCCACCGG
CTTGCTGTCCATCTTGCTGGACATGTTTCTGTCCAACTTTGTACCGCATG
GCGCCATGGACTCCGTCATTCGCGCGCTGCGCACCGAGGTGGCTGCGCAC
GCCGCCACGCACACCGATCTggccccggccccggctgcggccgcgccgca
gccgtcgccgcagccttcgccgcTCAACGTGGCCGCAGGCACCAAGTGCG
CCATCTGTCTGGCTCCTAATCGCAATGCTCAACGCTTTCTGCTCACACCA
AATAATCGAACCCCAATCGGAACGCCACCCGAAACTCCTCATTACTCAGA
TCGTCATTAG
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