Ggra3487.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3487.t1
Unique NameGgra3487.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length120
Homology
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BLAST of Ggra3487.t1 vs. uniprot
Match: A0A2V3IJU4 (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJU4_9FLOR)

HSP 1 Score: 53.5 bits (127), Expect = 1.860e-6
Identity = 31/86 (36.05%), Postives = 40/86 (46.51%), Query Frame = 0 
Query:    4 LKWCLPRHIHKPTGLLSILLDMFLSNFVPHGAMDSVIRALRTEVAAHAATHTDLAPXXXXXXXXXXXXXXXLNVAAGTKCAICLAP 89
            LK CLPR + +PTG  ++L DM L  FVPHGA  ++I  L  E+        +                  + V  G KCAICL P
Sbjct:   40 LKACLPRRMREPTGPFTLLFDMLLGIFVPHGACKTMIDKLPLEIVGEEQDDIESV---------------VIPVKRGDKCAICLGP 110
The following BLAST results are available for this feature:
BLAST of Ggra3487.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IJU41.860e-636.05E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:429143..429666 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3487.t1Ggra3487.t1Gracilaria gracilis GNS1m malemRNAtig00000059_pilon 429143..429666 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3487.t1 ID=Ggra3487.t1|Name=Ggra3487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=120bp
MQMLKWCLPRHIHKPTGLLSILLDMFLSNFVPHGAMDSVIRALRTEVAAH
AATHTDLAPAPAAAAPQPSPQPSPLNVAAGTKCAICLAPNRNAQRFLLTP
NNRTPIGTPPETPHYSDRH*
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