Ggra3513.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3513.t1
Unique NameGgra3513.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:582545..583141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1232410.KI421415_gene3098
PFAMsDnaJ,DnaJ_C
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03686,ko:K05516
Evalue1.75e-24
EggNOG OGsCOG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,42NBY@68525|delta/epsilon subdivisions,2WJV2@28221|Deltaproteobacteria,43SEE@69541|Desulfuromonadales
DescriptionDnaJ molecular chaperone homology domain
COG categoryO
BRITEko00000,ko03029,ko03036,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3513Ggra3513Gracilaria gracilis GNS1m malegenetig00000059_pilon 582545..583141 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3513.t1.start1Ggra3513.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 582545..582547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3513.t1.CDS1Ggra3513.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 582545..583141 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3513.t1.exon1Ggra3513.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 582545..583141 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3513.t1.stop1Ggra3513.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 583139..583141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3513.t1Ggra3513.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 582545..583141 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3513.t1 ID=Ggra3513.t1|Name=Ggra3513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MSRLQSSFIKLLILLVTTALHSAYAGRDYYDQLGVPRDASTSVIKKSYRQ
LAKMYHPDKHPGNKKYEKKFKDISTAYEVLSDQEKRRRYDQFGEEGLHNG
GGGGGGHAGFHGFGGGGGHQFHRASFGGGFAEFDSNMFADMFGGGFGASG
GAGSAGFGFNSNSRRQRYRQQQQPQRRVCFQNKICENNRCYSVKECTS*
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spliced messenger RNA

>Ggra3513.t1 ID=Ggra3513.t1|Name=Ggra3513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000059_pilon:582545..583141+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGGTTACAGTCCTCGTTCATCAAACTGCTCATATTGCTTGTAAC
AACCGCCTTGCATTCGGCGTATGCGGGCCGCGATTACTACGACCAGCTGG
GCGTTCCGCGCGACGCGTCCACCAGCGTGATAAAGAAGTCGTACCGCCAG
CTTGCAAAAATGTATCACCCCGACAAGCATCCGGGCAACAAAAAGTACGA
GAAGAAGTTCAAGGACATATCCACCGCGTACGAGGTGCTATCGGATCAGG
AGAAGCGGCGTCGATACGATCAGTTCGGCGAAGAAGGGCTACATAATggc
ggcggcggtggcggcggACATGCTGGTTTTCACGGCTTTGGTGGAGGTGG
AGGTCATCAGTTCCATCGTGCTTCTTTCGGTGGCGGCTTTGCCGAGTTTG
ACTCTAACATGTTTGCCGATATGTTTGGTGGCGGCTTTGGAGCCAGTGGT
GGCGCTGGTAGTGCTGGTTTCGGCTTTAACAGTAACTCACGTCGCCAGCG
ATATCGACAACAACAACAGCCTCAAAGACGCGTCTGTTTCCAGAACAAGA
TTTGTGAGAATAACCGGTGCTACAGCGTTAAGGAATGTACTTCGTAA
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protein sequence of Ggra3513.t1

>Ggra3513.t1 ID=Ggra3513.t1|Name=Ggra3513.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MSRLQSSFIKLLILLVTTALHSAYAGRDYYDQLGVPRDASTSVIKKSYRQ
LAKMYHPDKHPGNKKYEKKFKDISTAYEVLSDQEKRRRYDQFGEEGLHNG
GGGGGGHAGFHGFGGGGGHQFHRASFGGGFAEFDSNMFADMFGGGFGASG
GAGSAGFGFNSNSRRQRYRQQQQPQRRVCFQNKICENNRCYSVKECTS*
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mRNA from alignment at tig00000059_pilon:582545..583141+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3513.t1 ID=Ggra3513.t1|Name=Ggra3513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000059_pilon:582545..583141+ (Gracilaria gracilis GNS1m male)
ATGTCTCGGTTACAGTCCTCGTTCATCAAACTGCTCATATTGCTTGTAAC
AACCGCCTTGCATTCGGCGTATGCGGGCCGCGATTACTACGACCAGCTGG
GCGTTCCGCGCGACGCGTCCACCAGCGTGATAAAGAAGTCGTACCGCCAG
CTTGCAAAAATGTATCACCCCGACAAGCATCCGGGCAACAAAAAGTACGA
GAAGAAGTTCAAGGACATATCCACCGCGTACGAGGTGCTATCGGATCAGG
AGAAGCGGCGTCGATACGATCAGTTCGGCGAAGAAGGGCTACATAATggc
ggcggcggtggcggcggACATGCTGGTTTTCACGGCTTTGGTGGAGGTGG
AGGTCATCAGTTCCATCGTGCTTCTTTCGGTGGCGGCTTTGCCGAGTTTG
ACTCTAACATGTTTGCCGATATGTTTGGTGGCGGCTTTGGAGCCAGTGGT
GGCGCTGGTAGTGCTGGTTTCGGCTTTAACAGTAACTCACGTCGCCAGCG
ATATCGACAACAACAACAGCCTCAAAGACGCGTCTGTTTCCAGAACAAGA
TTTGTGAGAATAACCGGTGCTACAGCGTTAAGGAATGTACTTCGTAA
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Coding sequence (CDS) from alignment at tig00000059_pilon:582545..583141+

>Ggra3513.t1 ID=Ggra3513.t1|Name=Ggra3513.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000059_pilon:582545..583141+ (Gracilaria gracilis GNS1m male)
ATGTCTCGGTTACAGTCCTCGTTCATCAAACTGCTCATATTGCTTGTAAC
AACCGCCTTGCATTCGGCGTATGCGGGCCGCGATTACTACGACCAGCTGG
GCGTTCCGCGCGACGCGTCCACCAGCGTGATAAAGAAGTCGTACCGCCAG
CTTGCAAAAATGTATCACCCCGACAAGCATCCGGGCAACAAAAAGTACGA
GAAGAAGTTCAAGGACATATCCACCGCGTACGAGGTGCTATCGGATCAGG
AGAAGCGGCGTCGATACGATCAGTTCGGCGAAGAAGGGCTACATAATggc
ggcggcggtggcggcggACATGCTGGTTTTCACGGCTTTGGTGGAGGTGG
AGGTCATCAGTTCCATCGTGCTTCTTTCGGTGGCGGCTTTGCCGAGTTTG
ACTCTAACATGTTTGCCGATATGTTTGGTGGCGGCTTTGGAGCCAGTGGT
GGCGCTGGTAGTGCTGGTTTCGGCTTTAACAGTAACTCACGTCGCCAGCG
ATATCGACAACAACAACAGCCTCAAAGACGCGTCTGTTTCCAGAACAAGA
TTTGTGAGAATAACCGGTGCTACAGCGTTAAGGAATGTACTTCGTAA
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