Ggra3476.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3476.t1
Unique Name	Ggra3476.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	503

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:299215..300723 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1206733.BAGC01000114_gene7201
PFAMs	BBE,FAD_binding_4
Max annot lvl	201174\|Actinobacteria
Evalue	8.44e-43
EggNOG OGs	COG0277@1\|root,COG0277@2\|Bacteria,2GK5U@201174\|Actinobacteria,4FWGW@85025\|Nocardiaceae
Description	FAD binding domain
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3476	Ggra3476	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 299215..300723 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3476.t1.start1	Ggra3476.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 299215..299217 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3476.t1.CDS1	Ggra3476.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 299215..300723 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3476.t1.exon1	Ggra3476.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 299215..300723 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3476.t1.stop1	Ggra3476.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 300721..300723 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3476.t1	Ggra3476.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 299215..300723 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:299215..300723+
coding sequence from alignment at tig00000059_pilon:299215..300723+

mRNA sequence

>Ggra3476.t1 ID=Ggra3476.t1|Name=Ggra3476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=503bp
MMLFRAKLLTAALVVLSFAVVHVHANDRVRRLGACVGKQIAVFSPSNGRF
SDLKHLSFRSNRANPLAIVTAANEWQVATIVRCARSVALRVCARSGGHSL
IGHSLCNGVVIDLSLMKAVSMQPGNVALIQPGANMGEVLWALHKKRRWMA
AGVCPSVGFAGYVLGGGHGPYEGRLGLACDSMLSLRMVDRFGNVVVASRT
ERPMLFWALCGAGGGHFGIVTAFRWRTVTSAPFDRAVVFRFKWPTSRGGE
LLEKWQQYGEWGGNVWFRIEVYLSNRAQGVFGYGACYDVKSVADCMWRLN
RAPFFKTPGRSTAYISQVRNALDTHAFFGPEGEWGERRAPNLYKAMLQQR
GTQGSAANDRIYQSTFMNMNKKRQPSRAFWQKYVNFCQTAFGRTSIPWVV
CEMNLFNNAIDKQQNNAFAFRGANLITHYIVGGGTKEHRNFVYYWMKNHL
NSFTSGVYVNYAELELPNYAQMYWGRNLRNLRRVQKWYDPRYFFMNSQPI
PK*

spliced messenger RNA

>Ggra3476.t1 ID=Ggra3476.t1|Name=Ggra3476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000059_pilon:299215..300723+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTTGTTCCGCGCCAAGTTGCTGACCGCTGCGCTCGTCGTGCTGTC
TTTCGCTGTCGTGCACGTCCACGCCAATGACCGCGTCCGCCGCCTCGGGG
CGTGTGTCGGCAAGCAAATCGCCGTGTTCAGCCCGTCCAACGGCCGCTTC
TCCGACCTCAAGCACCTTTCGTTCCGCTCCAATCGCGCCAATCCGCTCGC
CATCGTCACCGCCGCCAACGAATGGCAGGTGGCCACCATCGTGCGTTGCG
CGCGTTCCGTGGCGCTGCGCGTGTGCGCGCGCTCGGGCGGCCACTCGTTG
ATCGGACATAGTTTGTGTAATGGCGTCGTCATTGACCTCTCGCTCATGAA
AGCCGTCTCCATGCAGCCGGGAAACGTCGCGCTCATTCAGCCGGGCGCTA
ACATGGGCGAGGTGCTCTGGGCCTTGCATAAAAAGCGTCGCTGGATGGCG
GCTGGGGTGTGTCCGTCTGTCGGCTTTGCGGGCTATGTCTTGGGTGGGGG
ACATGGACCTTATGAGGGGCGATTGGGTCTGGCTTGTGATTCTATGCTTT
CGCTTCGTATGGTGGATCGCTTTGGAAACGTGGTCGTTGCTTCGCGCACC
GAGAGACCCATGTTGTTCTGGGCCTTGTGTGGCGCCGGTGGTGGTCACTT
TGGTATTGTCACCGCCTTCAGATGGCGCACTGTCACTTCTGCACCGTTTG
ATCGAGCCGTTGTATTCCGCTTCAAGTGGCCGACTAGCAGGGGTGGTGAG
CTGCTCGAGAAGTGGCAGCAATACGGTGAATGGGGTGGCAATGTATGGTT
CCGAATTGAAGTGTATCTAAGCAACAGAGCGCAAGGTGTGTTTGGGTATG
GTGCTTGTTATGATGTCAAGTCAGTCGCTGATTGCATGTGGCGACTCAAC
CGTGCTCCCTTCTTCAAAACCCCGGGCCGGTCAACCGCCTACATCTCCCA
GGTGAGGAATGCCTTAGACACTCATGCTTTCTTTGGACCAGAAGGAGAAT
GGGGAGAACGAAGGGCCCCTAACTTGTACAAGGCTATGCTACAGCAGCGT
GGCACTCAAGGTAGCGCTGCCAATGACCGTATCTATCAGTCTACGTTTAT
GAACATGAACAAAAAGAGGCAACCGTCGCGTGCCTTCTGGCAGAAGTATG
TCAACTTTTGTCAAACCGCCTTTGGACGCACCAGTATTCCGTGGGTTGTG
TGCGAGATGAATTTGTTCAACAACGCCATCGACAAACAACAGAATAATGC
GTTTGCGTTCAGGGGCGCCAATCTTATCACGCATTATATCGTTGGTGGTG
GAACGAAGGAGCATAGAAACTTTGTGTATTATTGGATGAAGAATCATTTG
AATTCGTTTACCTCGGGTGTTTATGTGAATTATGCCGAGCTGGAACTGCC
CAATTATGCACAAATGTACTGGGGAAGAAACTTGCGCAATCTAAGACGCG
TGCAGAAGTGGTATGATCCTCGCTACTTCTTCATGAACTCGCAGCCGATT
CCCAAGTGA

protein sequence of Ggra3476.t1

>Ggra3476.t1 ID=Ggra3476.t1|Name=Ggra3476.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=503bp
MMLFRAKLLTAALVVLSFAVVHVHANDRVRRLGACVGKQIAVFSPSNGRF
SDLKHLSFRSNRANPLAIVTAANEWQVATIVRCARSVALRVCARSGGHSL
IGHSLCNGVVIDLSLMKAVSMQPGNVALIQPGANMGEVLWALHKKRRWMA
AGVCPSVGFAGYVLGGGHGPYEGRLGLACDSMLSLRMVDRFGNVVVASRT
ERPMLFWALCGAGGGHFGIVTAFRWRTVTSAPFDRAVVFRFKWPTSRGGE
LLEKWQQYGEWGGNVWFRIEVYLSNRAQGVFGYGACYDVKSVADCMWRLN
RAPFFKTPGRSTAYISQVRNALDTHAFFGPEGEWGERRAPNLYKAMLQQR
GTQGSAANDRIYQSTFMNMNKKRQPSRAFWQKYVNFCQTAFGRTSIPWVV
CEMNLFNNAIDKQQNNAFAFRGANLITHYIVGGGTKEHRNFVYYWMKNHL
NSFTSGVYVNYAELELPNYAQMYWGRNLRNLRRVQKWYDPRYFFMNSQPI
PK*

mRNA from alignment at tig00000059_pilon:299215..300723+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3476.t1 ID=Ggra3476.t1|Name=Ggra3476.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000059_pilon:299215..300723+ (Gracilaria gracilis GNS1m male)
ATGATGTTGTTCCGCGCCAAGTTGCTGACCGCTGCGCTCGTCGTGCTGTC
TTTCGCTGTCGTGCACGTCCACGCCAATGACCGCGTCCGCCGCCTCGGGG
CGTGTGTCGGCAAGCAAATCGCCGTGTTCAGCCCGTCCAACGGCCGCTTC
TCCGACCTCAAGCACCTTTCGTTCCGCTCCAATCGCGCCAATCCGCTCGC
CATCGTCACCGCCGCCAACGAATGGCAGGTGGCCACCATCGTGCGTTGCG
CGCGTTCCGTGGCGCTGCGCGTGTGCGCGCGCTCGGGCGGCCACTCGTTG
ATCGGACATAGTTTGTGTAATGGCGTCGTCATTGACCTCTCGCTCATGAA
AGCCGTCTCCATGCAGCCGGGAAACGTCGCGCTCATTCAGCCGGGCGCTA
ACATGGGCGAGGTGCTCTGGGCCTTGCATAAAAAGCGTCGCTGGATGGCG
GCTGGGGTGTGTCCGTCTGTCGGCTTTGCGGGCTATGTCTTGGGTGGGGG
ACATGGACCTTATGAGGGGCGATTGGGTCTGGCTTGTGATTCTATGCTTT
CGCTTCGTATGGTGGATCGCTTTGGAAACGTGGTCGTTGCTTCGCGCACC
GAGAGACCCATGTTGTTCTGGGCCTTGTGTGGCGCCGGTGGTGGTCACTT
TGGTATTGTCACCGCCTTCAGATGGCGCACTGTCACTTCTGCACCGTTTG
ATCGAGCCGTTGTATTCCGCTTCAAGTGGCCGACTAGCAGGGGTGGTGAG
CTGCTCGAGAAGTGGCAGCAATACGGTGAATGGGGTGGCAATGTATGGTT
CCGAATTGAAGTGTATCTAAGCAACAGAGCGCAAGGTGTGTTTGGGTATG
GTGCTTGTTATGATGTCAAGTCAGTCGCTGATTGCATGTGGCGACTCAAC
CGTGCTCCCTTCTTCAAAACCCCGGGCCGGTCAACCGCCTACATCTCCCA
GGTGAGGAATGCCTTAGACACTCATGCTTTCTTTGGACCAGAAGGAGAAT
GGGGAGAACGAAGGGCCCCTAACTTGTACAAGGCTATGCTACAGCAGCGT
GGCACTCAAGGTAGCGCTGCCAATGACCGTATCTATCAGTCTACGTTTAT
GAACATGAACAAAAAGAGGCAACCGTCGCGTGCCTTCTGGCAGAAGTATG
TCAACTTTTGTCAAACCGCCTTTGGACGCACCAGTATTCCGTGGGTTGTG
TGCGAGATGAATTTGTTCAACAACGCCATCGACAAACAACAGAATAATGC
GTTTGCGTTCAGGGGCGCCAATCTTATCACGCATTATATCGTTGGTGGTG
GAACGAAGGAGCATAGAAACTTTGTGTATTATTGGATGAAGAATCATTTG
AATTCGTTTACCTCGGGTGTTTATGTGAATTATGCCGAGCTGGAACTGCC
CAATTATGCACAAATGTACTGGGGAAGAAACTTGCGCAATCTAAGACGCG
TGCAGAAGTGGTATGATCCTCGCTACTTCTTCATGAACTCGCAGCCGATT
CCCAAGTGA

Coding sequence (CDS) from alignment at tig00000059_pilon:299215..300723+

>Ggra3476.t1 ID=Ggra3476.t1|Name=Ggra3476.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00000059_pilon:299215..300723+ (Gracilaria gracilis GNS1m male)
ATGATGTTGTTCCGCGCCAAGTTGCTGACCGCTGCGCTCGTCGTGCTGTC
TTTCGCTGTCGTGCACGTCCACGCCAATGACCGCGTCCGCCGCCTCGGGG
CGTGTGTCGGCAAGCAAATCGCCGTGTTCAGCCCGTCCAACGGCCGCTTC
TCCGACCTCAAGCACCTTTCGTTCCGCTCCAATCGCGCCAATCCGCTCGC
CATCGTCACCGCCGCCAACGAATGGCAGGTGGCCACCATCGTGCGTTGCG
CGCGTTCCGTGGCGCTGCGCGTGTGCGCGCGCTCGGGCGGCCACTCGTTG
ATCGGACATAGTTTGTGTAATGGCGTCGTCATTGACCTCTCGCTCATGAA
AGCCGTCTCCATGCAGCCGGGAAACGTCGCGCTCATTCAGCCGGGCGCTA
ACATGGGCGAGGTGCTCTGGGCCTTGCATAAAAAGCGTCGCTGGATGGCG
GCTGGGGTGTGTCCGTCTGTCGGCTTTGCGGGCTATGTCTTGGGTGGGGG
ACATGGACCTTATGAGGGGCGATTGGGTCTGGCTTGTGATTCTATGCTTT
CGCTTCGTATGGTGGATCGCTTTGGAAACGTGGTCGTTGCTTCGCGCACC
GAGAGACCCATGTTGTTCTGGGCCTTGTGTGGCGCCGGTGGTGGTCACTT
TGGTATTGTCACCGCCTTCAGATGGCGCACTGTCACTTCTGCACCGTTTG
ATCGAGCCGTTGTATTCCGCTTCAAGTGGCCGACTAGCAGGGGTGGTGAG
CTGCTCGAGAAGTGGCAGCAATACGGTGAATGGGGTGGCAATGTATGGTT
CCGAATTGAAGTGTATCTAAGCAACAGAGCGCAAGGTGTGTTTGGGTATG
GTGCTTGTTATGATGTCAAGTCAGTCGCTGATTGCATGTGGCGACTCAAC
CGTGCTCCCTTCTTCAAAACCCCGGGCCGGTCAACCGCCTACATCTCCCA
GGTGAGGAATGCCTTAGACACTCATGCTTTCTTTGGACCAGAAGGAGAAT
GGGGAGAACGAAGGGCCCCTAACTTGTACAAGGCTATGCTACAGCAGCGT
GGCACTCAAGGTAGCGCTGCCAATGACCGTATCTATCAGTCTACGTTTAT
GAACATGAACAAAAAGAGGCAACCGTCGCGTGCCTTCTGGCAGAAGTATG
TCAACTTTTGTCAAACCGCCTTTGGACGCACCAGTATTCCGTGGGTTGTG
TGCGAGATGAATTTGTTCAACAACGCCATCGACAAACAACAGAATAATGC
GTTTGCGTTCAGGGGCGCCAATCTTATCACGCATTATATCGTTGGTGGTG
GAACGAAGGAGCATAGAAACTTTGTGTATTATTGGATGAAGAATCATTTG
AATTCGTTTACCTCGGGTGTTTATGTGAATTATGCCGAGCTGGAACTGCC
CAATTATGCACAAATGTACTGGGGAAGAAACTTGCGCAATCTAAGACGCG
TGCAGAAGTGGTATGATCCTCGCTACTTCTTCATGAACTCGCAGCCGATT
CCCAAGTGA