Ggra3434.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3434.t1
Unique NameGgra3434.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:39312..39779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009359131.1
PFAMsGSHPx
Max annot lvl35493|Streptophyta
KEGG rclassRC00011,RC00982
KEGG koko:K00432
KEGG ReactionR00274,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04918,map00480,map00590,map04918
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0080167
Evalue1.54e-28
EggNOG OGsCOG0386@1|root,KOG1651@2759|Eukaryota,37K04@33090|Viridiplantae,3G9CQ@35493|Streptophyta,4JEE8@91835|fabids
EC1.11.1.9
DescriptionBelongs to the glutathione peroxidase family
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3434Ggra3434Gracilaria gracilis GNS1m malegenetig00000059_pilon 39312..39779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3434.t1.stop1Ggra3434.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 39312..39314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3434.t1.CDS1Ggra3434.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 39312..39779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3434.t1.exon1Ggra3434.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 39312..39779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3434.t1.start1Ggra3434.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 39777..39779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3434.t1Ggra3434.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 39312..39779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3434.t1 ID=Ggra3434.t1|Name=Ggra3434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=156bp
MTLAELPQMRDIDGNVVSPTRFAGKVVFVMNVASACGYTSAGYSLFKKLT
DKYSPDSFVAVAIPCNSFGWQESGSPDQIKQFALQRADKLLIMERSDVNG
ANQHPIVQLAKSKFPARIGWNFDGRYVFDRSGVPVARFGNSATDEQVEAA
IDSAL*
back to top

spliced messenger RNA

>Ggra3434.t1 ID=Ggra3434.t1|Name=Ggra3434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000059_pilon:39312..39779- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTGGCCGAGCTGCCCCAGATGCGCGACATCGACGGCAACGTCGT
GTCGCCCACGCGCTTCGCCGGCAAGGTGGTGTTCGTCATGAACGTCGCGT
CCGCGTGCGGCTACACCAGCGCCGGGTACTCGCTGTTCAAGAAGCTCACC
GACAAGTACTCGCCGGACAGCTTTGTGGCCGTCGCCATCCCGTGCAACTC
GTTCGGCTGGCAGGAGAGCGGCTCGCCGGATCAGATCAAGCAGTTTGCGC
TGCAGCGCGCCGACAAGCTGCTCATCATGGAGCGATCTGACGTCAACGGT
GCCAATCAGCACCCCATTGTGCAGCTGGCCAAGTCCAAGTTTCCCGCTCG
CATTGGCTGGAACTTTGACGGCCGCTACGTCTTCGATCGCTCGGGCGTGC
CCGTCGCTCGCTTCGGGAACTCCGCAACCGATGAGCAGGTCGAGGCCGCC
ATTGACAGCGCGCTGTGA
back to top

protein sequence of Ggra3434.t1

>Ggra3434.t1 ID=Ggra3434.t1|Name=Ggra3434.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=156bp
MTLAELPQMRDIDGNVVSPTRFAGKVVFVMNVASACGYTSAGYSLFKKLT
DKYSPDSFVAVAIPCNSFGWQESGSPDQIKQFALQRADKLLIMERSDVNG
ANQHPIVQLAKSKFPARIGWNFDGRYVFDRSGVPVARFGNSATDEQVEAA
IDSAL*
back to top

mRNA from alignment at tig00000059_pilon:39312..39779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3434.t1 ID=Ggra3434.t1|Name=Ggra3434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000059_pilon:39312..39779- (Gracilaria gracilis GNS1m male)
ATGACGCTGGCCGAGCTGCCCCAGATGCGCGACATCGACGGCAACGTCGT
GTCGCCCACGCGCTTCGCCGGCAAGGTGGTGTTCGTCATGAACGTCGCGT
CCGCGTGCGGCTACACCAGCGCCGGGTACTCGCTGTTCAAGAAGCTCACC
GACAAGTACTCGCCGGACAGCTTTGTGGCCGTCGCCATCCCGTGCAACTC
GTTCGGCTGGCAGGAGAGCGGCTCGCCGGATCAGATCAAGCAGTTTGCGC
TGCAGCGCGCCGACAAGCTGCTCATCATGGAGCGATCTGACGTCAACGGT
GCCAATCAGCACCCCATTGTGCAGCTGGCCAAGTCCAAGTTTCCCGCTCG
CATTGGCTGGAACTTTGACGGCCGCTACGTCTTCGATCGCTCGGGCGTGC
CCGTCGCTCGCTTCGGGAACTCCGCAACCGATGAGCAGGTCGAGGCCGCC
ATTGACAGCGCGCTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000059_pilon:39312..39779-

>Ggra3434.t1 ID=Ggra3434.t1|Name=Ggra3434.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=468bp|location=Sequence derived from alignment at tig00000059_pilon:39312..39779- (Gracilaria gracilis GNS1m male)
ATGACGCTGGCCGAGCTGCCCCAGATGCGCGACATCGACGGCAACGTCGT
GTCGCCCACGCGCTTCGCCGGCAAGGTGGTGTTCGTCATGAACGTCGCGT
CCGCGTGCGGCTACACCAGCGCCGGGTACTCGCTGTTCAAGAAGCTCACC
GACAAGTACTCGCCGGACAGCTTTGTGGCCGTCGCCATCCCGTGCAACTC
GTTCGGCTGGCAGGAGAGCGGCTCGCCGGATCAGATCAAGCAGTTTGCGC
TGCAGCGCGCCGACAAGCTGCTCATCATGGAGCGATCTGACGTCAACGGT
GCCAATCAGCACCCCATTGTGCAGCTGGCCAAGTCCAAGTTTCCCGCTCG
CATTGGCTGGAACTTTGACGGCCGCTACGTCTTCGATCGCTCGGGCGTGC
CCGTCGCTCGCTTCGGGAACTCCGCAACCGATGAGCAGGTCGAGGCCGCC
ATTGACAGCGCGCTGTGA
back to top