Ggra6712.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6712.t1
Unique Name	Ggra6712.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	391

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:267374..268546 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1250006.JHZZ01000001_gene2006
PFAMs	Lactonase
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00537
KEGG ko	ko:K07404
KEGG Reaction	R02035
KEGG Pathway	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00004,M00006,M00008
Evalue	4.35e-21
EggNOG OGs	COG2706@1\|root,COG2706@2\|Bacteria,4NE87@976\|Bacteroidetes,1I0Q4@117743\|Flavobacteriia,3VW4G@52959\|Polaribacter
EC	3.1.1.31
Description	Lactonase, 7-bladed beta-propeller
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6712	Ggra6712	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 267374..268546 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6712.t1.start1	Ggra6712.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 267374..267376 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6712.t1.CDS1	Ggra6712.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 267374..268546 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6712.t1.exon1	Ggra6712.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 267374..268546 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6712.t1.stop1	Ggra6712.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 268544..268546 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6712.t1	Ggra6712.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 267374..268546 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:267374..268546+
coding sequence from alignment at tig00000056_pilon:267374..268546+

mRNA sequence

>Ggra6712.t1 ID=Ggra6712.t1|Name=Ggra6712.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MNLGLPLAVMCYFFASSPECPQTCPDTFSLAIGSYTNHAWFTESKGEGVY
IVDYKNNSVAVSQVLNTSVTGDNPTYIAPWKPYLFIGNSIYEGGSVTRVF
LCDDHKPIYSRSANASGLFTDHVSVISSRVAMGANFLGSFDSYISEHGVL
KLSDSFKVPLELASEVVENRTLGPMFGQPHPHMVLPYKDGVIVPDAGSDI
VWHFKVNATDGKLTMLKSIKMHLQDAPRHAAKHPTTDTVYVVGEVSATIS
VLKPSSDGLWVCCRISVFEKKPEDVSLAAIRVTNDGRFLYVSVRYPGTAN
GYIAGYRLNERTGDIQAKIGMWDAFGVHPRDFFVLEAVQFEGRCISFVAV
VHRDTDNLVLFERDRGSGMLMPRPALELNVSSPTSVIPIW*

spliced messenger RNA

>Ggra6712.t1 ID=Ggra6712.t1|Name=Ggra6712.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000056_pilon:267374..268546+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTCGGGCTCCCGCTCGCGGTTATGTGCTACTTCTTTGCCAGTTC
GCCTGAATGCCCCCAGACCTGTCCCGATACTTTCTCGCTCGCAATTGGAA
GCTACACAAACCATGCATGGTTTACCGAATCCAAAGGAGAAGGTGTTTAC
ATCGTTGACTACAAGAACAACTCAGTCGCAGTCTCCCAAGTGCTGAACAC
ATCTGTGACAGGGGACAATCCCACCTACATTGCCCCTTGGAAACCGTATT
TGTTCATTGGCAACTCCATTTACGAAGGAGGTTCTGTAACGCGTGTCTTT
TTGTGCGATGACCACAAGCCCATCTACTCAAGGAGTGCCAACGCCTCCGG
CCTGTTTACGGATCACGTGTCCGTAATTTCATCCAGAGTGGCCATGGGCG
CCAACTTTCTGGGTTCGTTTGACTCTTACATCAGCGAACATGGTGTGCTC
AAGCTAAGTGATTCTTTCAAAGTGCCTTTGGAGTTGGCTTCAGAAGTTGT
CGAGAATCGCACTCTGGGACCTATGTTTGGTCAACCCCATCCTCACATGG
TGCTGCCCTATAAGGACGGTGTTATTGTACCTGATGCTGGCTCGGATATC
GTGTGGCACTTTAAAGTGAATGCCACTGATGGAAAACTCACCATGCTTAA
GAGCATCAAGATGCACCTCCAAGATGCTCCTCGTCATGCGGCGAAGCATC
CCACAACTGACACGGTGTATGTCGTAGGTGAGGTATCGGCAACCATTTCG
GTATTGAAACCGTCCAGTGACGGGCTTTGGGTGTGTTGTAGAATTAGTGT
ATTCGAGAAGAAGCCTGAGGATGTATCACTCGCGGCGATAAGGGTTACCA
ACGATGGACGATTCCTTTATGTTTCTGTGAGGTATCCAGGAACTGCCAAT
GGATATATTGCTGGATACAGGCTAAATGAAAGAACCGGTGATATACAAGC
AAAGATTGGTATGTGGGACGCTTTCGGTGTGCACCCAAGAGACTTTTTCG
TTCTAGAGGCAGTGCAATTTGAGGGCCGGTGCATAAGCTTTGTTGCAGTG
GTTCATCGGGATACGGACAATCTTGTTCTTTTCGAACGTGATCGCGGCTC
TGGCATGCTCATGCCCCGCCCTGCGTTGGAGTTGAATGTATCTTCTCCAA
CATCTGTGATTCCTATATGGTGA

protein sequence of Ggra6712.t1

>Ggra6712.t1 ID=Ggra6712.t1|Name=Ggra6712.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MNLGLPLAVMCYFFASSPECPQTCPDTFSLAIGSYTNHAWFTESKGEGVY
IVDYKNNSVAVSQVLNTSVTGDNPTYIAPWKPYLFIGNSIYEGGSVTRVF
LCDDHKPIYSRSANASGLFTDHVSVISSRVAMGANFLGSFDSYISEHGVL
KLSDSFKVPLELASEVVENRTLGPMFGQPHPHMVLPYKDGVIVPDAGSDI
VWHFKVNATDGKLTMLKSIKMHLQDAPRHAAKHPTTDTVYVVGEVSATIS
VLKPSSDGLWVCCRISVFEKKPEDVSLAAIRVTNDGRFLYVSVRYPGTAN
GYIAGYRLNERTGDIQAKIGMWDAFGVHPRDFFVLEAVQFEGRCISFVAV
VHRDTDNLVLFERDRGSGMLMPRPALELNVSSPTSVIPIW*

mRNA from alignment at tig00000056_pilon:267374..268546+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6712.t1 ID=Ggra6712.t1|Name=Ggra6712.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000056_pilon:267374..268546+ (Gracilaria gracilis GNS1m male)
ATGAATCTCGGGCTCCCGCTCGCGGTTATGTGCTACTTCTTTGCCAGTTC
GCCTGAATGCCCCCAGACCTGTCCCGATACTTTCTCGCTCGCAATTGGAA
GCTACACAAACCATGCATGGTTTACCGAATCCAAAGGAGAAGGTGTTTAC
ATCGTTGACTACAAGAACAACTCAGTCGCAGTCTCCCAAGTGCTGAACAC
ATCTGTGACAGGGGACAATCCCACCTACATTGCCCCTTGGAAACCGTATT
TGTTCATTGGCAACTCCATTTACGAAGGAGGTTCTGTAACGCGTGTCTTT
TTGTGCGATGACCACAAGCCCATCTACTCAAGGAGTGCCAACGCCTCCGG
CCTGTTTACGGATCACGTGTCCGTAATTTCATCCAGAGTGGCCATGGGCG
CCAACTTTCTGGGTTCGTTTGACTCTTACATCAGCGAACATGGTGTGCTC
AAGCTAAGTGATTCTTTCAAAGTGCCTTTGGAGTTGGCTTCAGAAGTTGT
CGAGAATCGCACTCTGGGACCTATGTTTGGTCAACCCCATCCTCACATGG
TGCTGCCCTATAAGGACGGTGTTATTGTACCTGATGCTGGCTCGGATATC
GTGTGGCACTTTAAAGTGAATGCCACTGATGGAAAACTCACCATGCTTAA
GAGCATCAAGATGCACCTCCAAGATGCTCCTCGTCATGCGGCGAAGCATC
CCACAACTGACACGGTGTATGTCGTAGGTGAGGTATCGGCAACCATTTCG
GTATTGAAACCGTCCAGTGACGGGCTTTGGGTGTGTTGTAGAATTAGTGT
ATTCGAGAAGAAGCCTGAGGATGTATCACTCGCGGCGATAAGGGTTACCA
ACGATGGACGATTCCTTTATGTTTCTGTGAGGTATCCAGGAACTGCCAAT
GGATATATTGCTGGATACAGGCTAAATGAAAGAACCGGTGATATACAAGC
AAAGATTGGTATGTGGGACGCTTTCGGTGTGCACCCAAGAGACTTTTTCG
TTCTAGAGGCAGTGCAATTTGAGGGCCGGTGCATAAGCTTTGTTGCAGTG
GTTCATCGGGATACGGACAATCTTGTTCTTTTCGAACGTGATCGCGGCTC
TGGCATGCTCATGCCCCGCCCTGCGTTGGAGTTGAATGTATCTTCTCCAA
CATCTGTGATTCCTATATGGTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:267374..268546+

>Ggra6712.t1 ID=Ggra6712.t1|Name=Ggra6712.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000056_pilon:267374..268546+ (Gracilaria gracilis GNS1m male)
ATGAATCTCGGGCTCCCGCTCGCGGTTATGTGCTACTTCTTTGCCAGTTC
GCCTGAATGCCCCCAGACCTGTCCCGATACTTTCTCGCTCGCAATTGGAA
GCTACACAAACCATGCATGGTTTACCGAATCCAAAGGAGAAGGTGTTTAC
ATCGTTGACTACAAGAACAACTCAGTCGCAGTCTCCCAAGTGCTGAACAC
ATCTGTGACAGGGGACAATCCCACCTACATTGCCCCTTGGAAACCGTATT
TGTTCATTGGCAACTCCATTTACGAAGGAGGTTCTGTAACGCGTGTCTTT
TTGTGCGATGACCACAAGCCCATCTACTCAAGGAGTGCCAACGCCTCCGG
CCTGTTTACGGATCACGTGTCCGTAATTTCATCCAGAGTGGCCATGGGCG
CCAACTTTCTGGGTTCGTTTGACTCTTACATCAGCGAACATGGTGTGCTC
AAGCTAAGTGATTCTTTCAAAGTGCCTTTGGAGTTGGCTTCAGAAGTTGT
CGAGAATCGCACTCTGGGACCTATGTTTGGTCAACCCCATCCTCACATGG
TGCTGCCCTATAAGGACGGTGTTATTGTACCTGATGCTGGCTCGGATATC
GTGTGGCACTTTAAAGTGAATGCCACTGATGGAAAACTCACCATGCTTAA
GAGCATCAAGATGCACCTCCAAGATGCTCCTCGTCATGCGGCGAAGCATC
CCACAACTGACACGGTGTATGTCGTAGGTGAGGTATCGGCAACCATTTCG
GTATTGAAACCGTCCAGTGACGGGCTTTGGGTGTGTTGTAGAATTAGTGT
ATTCGAGAAGAAGCCTGAGGATGTATCACTCGCGGCGATAAGGGTTACCA
ACGATGGACGATTCCTTTATGTTTCTGTGAGGTATCCAGGAACTGCCAAT
GGATATATTGCTGGATACAGGCTAAATGAAAGAACCGGTGATATACAAGC
AAAGATTGGTATGTGGGACGCTTTCGGTGTGCACCCAAGAGACTTTTTCG
TTCTAGAGGCAGTGCAATTTGAGGGCCGGTGCATAAGCTTTGTTGCAGTG
GTTCATCGGGATACGGACAATCTTGTTCTTTTCGAACGTGATCGCGGCTC
TGGCATGCTCATGCCCCGCCCTGCGTTGGAGTTGAATGTATCTTCTCCAA
CATCTGTGATTCCTATATGGTGA