Ggra6663.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6663.t1
Unique NameGgra6663.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:59179..59683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog221103.XP_007844417.1
Preferred nameRPL44
PFAMsRibosomal_L44
Max annot lvl4751|Fungi
KEGG koko:K02929
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.58e-52
EggNOG OGsCOG1631@1|root,KOG3464@2759|Eukaryota,3A3DQ@33154|Opisthokonta,3P3Z6@4751|Fungi,3V18B@5204|Basidiomycota,229JY@155619|Agaricomycetes,3W77C@5338|Agaricales
DescriptionBelongs to the eukaryotic ribosomal protein eL42 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6663Ggra6663Gracilaria gracilis GNS1m malegenetig00000056_pilon 59179..59683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6663.t1Ggra6663.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 59179..59683 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6663.t1.stop1Ggra6663.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 59179..59181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6663.t1.CDS1Ggra6663.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 59179..59315 -
Ggra6663.t1.CDS2Ggra6663.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 59417..59594 -
Ggra6663.t1.CDS3Ggra6663.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 59681..59683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6663.t1.exon1Ggra6663.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 59179..59315 -
Ggra6663.t1.exon2Ggra6663.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 59417..59594 -
Ggra6663.t1.exon3Ggra6663.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 59681..59683 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6663.t1.intron1Ggra6663.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 59316..59416 -
Ggra6663.t1.intron2Ggra6663.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 59595..59680 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6663.t1.start1Ggra6663.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 59681..59683 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6663.t1 ID=Ggra6663.t1|Name=Ggra6663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=106bp
MVVVPKSRKTLCIAARCKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQSGF
GGQTKPVFHKKAKTTKKIVLRLECTQCGFKQQRVIKRCKHFELGDQKKTK
GVATY*
back to top

spliced messenger RNA

>Ggra6663.t1 ID=Ggra6663.t1|Name=Ggra6663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00000056_pilon:59179..59683- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCGTTCCCAAGTCCCGTAAGACGCTCTGCATCGCCGCACGATG
CAAGAAGCACACCTTGCACAAGGTCACCCAGTACAAGAAGGGCAAGGACT
CGCTCTACGCCCAGGGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTTC
GGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGGCCAAGACCACCAAGAA
GATCGTGCTGCGTCTGGAGTGCACACAATGCGGCTTTAAGCAACAGCGAG
TCATCAAGCGATGCAAGCATTTCGAGCTGGGCGATCAGAAGAAGACAAAG
GGTGTCGCCACCTACTAA
back to top

protein sequence of Ggra6663.t1

>Ggra6663.t1 ID=Ggra6663.t1|Name=Ggra6663.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MVVVPKSRKTLCIAARCKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQSGF
GGQTKPVFHKKAKTTKKIVLRLECTQCGFKQQRVIKRCKHFELGDQKKTK
GVATY*
back to top

mRNA from alignment at tig00000056_pilon:59179..59683-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6663.t1 ID=Ggra6663.t1|Name=Ggra6663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp|location=Sequence derived from alignment at tig00000056_pilon:59179..59683- (Gracilaria gracilis GNS1m male)
ATGGTATGCTCCCACCCACAATCTCGTCGCATCGCGTTTTATGTCATCTT
CACACCCATCTAACTTGTCTTTACCACCCATTTTCGCAGGTTGTCGTTCC
CAAGTCCCGTAAGACGCTCTGCATCGCCGCACGATGCAAGAAGCACACCT
TGCACAAGGTCACCCAGTACAAGAAGGGCAAGGACTCGCTCTACGCCCAG
GGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTTCGGAGGTCAGACCAA
GCCCGTCTTCCACAAGAGTACGTTTTCATGCGCTCCGTTCCAACTGCCTC
ACACCCCACCCACACTCACACCGTTTCGCTCTACCATCTCGTGTGTTCCC
CGCCTCTCCACACCACAGAGGCCAAGACCACCAAGAAGATCGTGCTGCGT
CTGGAGTGCACACAATGCGGCTTTAAGCAACAGCGAGTCATCAAGCGATG
CAAGCATTTCGAGCTGGGCGATCAGAAGAAGACAAAGGGTGTCGCCACCT
ACTAA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:59179..59683-

>Ggra6663.t1 ID=Ggra6663.t1|Name=Ggra6663.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00000056_pilon:59179..59683- (Gracilaria gracilis GNS1m male)
ATGGTTGTCGTTCCCAAGTCCCGTAAGACGCTCTGCATCGCCGCACGATG
CAAGAAGCACACCTTGCACAAGGTCACCCAGTACAAGAAGGGCAAGGACT
CGCTCTACGCCCAGGGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTTC
GGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGGCCAAGACCACCAAGAA
GATCGTGCTGCGTCTGGAGTGCACACAATGCGGCTTTAAGCAACAGCGAG
TCATCAAGCGATGCAAGCATTTCGAGCTGGGCGATCAGAAGAAGACAAAG
GGTGTCGCCACCTACTAA
back to top