Ggra6790.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6790.t1
Unique NameGgra6790.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:526245..526985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6790Ggra6790Gracilaria gracilis GNS1m malegenetig00000056_pilon 526245..526985 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6790.t1.start1Ggra6790.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 526245..526247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6790.t1.CDS1Ggra6790.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 526245..526985 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6790.t1.exon1Ggra6790.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 526245..526985 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6790.t1.stop1Ggra6790.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 526983..526985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6790.t1Ggra6790.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 526245..526985 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6790.t1 ID=Ggra6790.t1|Name=Ggra6790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MDAAADAATPLAERLRLACERARYAPPPRAVAHPAGGARLTPPSPPPPPS
PSLSARPQQSLRASYLHAVLPAAAAETPSARRRRRRAPSWGGSHACATLD
SFRASLRSPAAVASAPAPAAASAAASAAAAKAASAAGADAVLWGAQEHAA
ASAVLRDVRAQHARLKPGAAGVLRSRKLKPHAAAEMARARVAAAAAAAVM
KQQPEHTPTLTSVDVPHFVRPRFRRSSATRAKKRVHFSEHTVFKHR*
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spliced messenger RNA

>Ggra6790.t1 ID=Ggra6790.t1|Name=Ggra6790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000056_pilon:526245..526985+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCCGCCGCCGACGCCGCCACGCCGCTTGCGGAGCGGCTGCGCCT
CGCGTGCGAGCGCGCGCGCTATGCGCCGCCGCCGCGCGCAGTGGCGCACC
CTGCCGGCGGCGCGCGCTTGACGCCGCCGTCGCCGCCGCCGCCGCCGTCC
CCGTCGCTGAGCGCGCGCCCGCAACAGTCGCTACGCGCGTCATACCTACA
CGCCGTGCTGCCCGCGGCCGCAGCAGAAACGCCATCGGCGCGCCGCCGCC
GCCGCCGCGCGCCGTCGTGGGGCGGCTCGCACGCCTGCGCGACGCTAGAC
TCGTTCCGCGCCTCGCTGCGCAGCCcagcggcggtggcgtcagcgccagc
gccagcggcggcgtcagcggcggcgtcagcggcggcggcgaaggcggcgt
cggcggcGGGCGCAGACGCGGTGCTGTGGGGCGCGCAGGAGCACGCGGCG
GCCAGCGCCGTGCTGCGCGACGTGCGCGCGCAGCACGCGCGGCTCAAGCC
GGGCGCGGCGGGCGTGCTGCGCAGCCGCAAGCTCAAGCCGCACGCGGCGG
CGGAGATGGCGCGCGCGCGCGTGgccgccgccgccgccgccgccgTCATG
AAGCAGCAGCCCGAGCACACGCCCACTCTCACCAGCGTGGACGTGCCGCA
CTTTGTGCGCCCGCGCTTTCGACGCTCCTCCGCCACGCGCGCCAAGAAGC
GCGTACACTTTTCGGAGCACACTGTCTTCAAGCATCGTTGA
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protein sequence of Ggra6790.t1

>Ggra6790.t1 ID=Ggra6790.t1|Name=Ggra6790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MDAAADAATPLAERLRLACERARYAPPPRAVAHPAGGARLTPPSPPPPPS
PSLSARPQQSLRASYLHAVLPAAAAETPSARRRRRRAPSWGGSHACATLD
SFRASLRSPAAVASAPAPAAASAAASAAAAKAASAAGADAVLWGAQEHAA
ASAVLRDVRAQHARLKPGAAGVLRSRKLKPHAAAEMARARVAAAAAAAVM
KQQPEHTPTLTSVDVPHFVRPRFRRSSATRAKKRVHFSEHTVFKHR*
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mRNA from alignment at tig00000056_pilon:526245..526985+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6790.t1 ID=Ggra6790.t1|Name=Ggra6790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000056_pilon:526245..526985+ (Gracilaria gracilis GNS1m male)
ATGGATGCCGCCGCCGACGCCGCCACGCCGCTTGCGGAGCGGCTGCGCCT
CGCGTGCGAGCGCGCGCGCTATGCGCCGCCGCCGCGCGCAGTGGCGCACC
CTGCCGGCGGCGCGCGCTTGACGCCGCCGTCGCCGCCGCCGCCGCCGTCC
CCGTCGCTGAGCGCGCGCCCGCAACAGTCGCTACGCGCGTCATACCTACA
CGCCGTGCTGCCCGCGGCCGCAGCAGAAACGCCATCGGCGCGCCGCCGCC
GCCGCCGCGCGCCGTCGTGGGGCGGCTCGCACGCCTGCGCGACGCTAGAC
TCGTTCCGCGCCTCGCTGCGCAGCCcagcggcggtggcgtcagcgccagc
gccagcggcggcgtcagcggcggcgtcagcggcggcggcgaaggcggcgt
cggcggcGGGCGCAGACGCGGTGCTGTGGGGCGCGCAGGAGCACGCGGCG
GCCAGCGCCGTGCTGCGCGACGTGCGCGCGCAGCACGCGCGGCTCAAGCC
GGGCGCGGCGGGCGTGCTGCGCAGCCGCAAGCTCAAGCCGCACGCGGCGG
CGGAGATGGCGCGCGCGCGCGTGgccgccgccgccgccgccgccgTCATG
AAGCAGCAGCCCGAGCACACGCCCACTCTCACCAGCGTGGACGTGCCGCA
CTTTGTGCGCCCGCGCTTTCGACGCTCCTCCGCCACGCGCGCCAAGAAGC
GCGTACACTTTTCGGAGCACACTGTCTTCAAGCATCGTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:526245..526985+

>Ggra6790.t1 ID=Ggra6790.t1|Name=Ggra6790.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000056_pilon:526245..526985+ (Gracilaria gracilis GNS1m male)
ATGGATGCCGCCGCCGACGCCGCCACGCCGCTTGCGGAGCGGCTGCGCCT
CGCGTGCGAGCGCGCGCGCTATGCGCCGCCGCCGCGCGCAGTGGCGCACC
CTGCCGGCGGCGCGCGCTTGACGCCGCCGTCGCCGCCGCCGCCGCCGTCC
CCGTCGCTGAGCGCGCGCCCGCAACAGTCGCTACGCGCGTCATACCTACA
CGCCGTGCTGCCCGCGGCCGCAGCAGAAACGCCATCGGCGCGCCGCCGCC
GCCGCCGCGCGCCGTCGTGGGGCGGCTCGCACGCCTGCGCGACGCTAGAC
TCGTTCCGCGCCTCGCTGCGCAGCCcagcggcggtggcgtcagcgccagc
gccagcggcggcgtcagcggcggcgtcagcggcggcggcgaaggcggcgt
cggcggcGGGCGCAGACGCGGTGCTGTGGGGCGCGCAGGAGCACGCGGCG
GCCAGCGCCGTGCTGCGCGACGTGCGCGCGCAGCACGCGCGGCTCAAGCC
GGGCGCGGCGGGCGTGCTGCGCAGCCGCAAGCTCAAGCCGCACGCGGCGG
CGGAGATGGCGCGCGCGCGCGTGgccgccgccgccgccgccgccgTCATG
AAGCAGCAGCCCGAGCACACGCCCACTCTCACCAGCGTGGACGTGCCGCA
CTTTGTGCGCCCGCGCTTTCGACGCTCCTCCGCCACGCGCGCCAAGAAGC
GCGTACACTTTTCGGAGCACACTGTCTTCAAGCATCGTTGA
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