Ggra6856.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6856.t1
Unique NameGgra6856.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:685838..687097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705362.1
Preferred namePRO1
PFAMsAA_kinase,PUA
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043
KEGG koko:K00931
KEGG ReactionR00239
KEGG Pathwayko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230
KEGG ModuleM00015
GOsGO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0034517,GO:0035973,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0061912,GO:0061919,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue6.52e-111
EggNOG OGsCOG0263@1|root,KOG1154@2759|Eukaryota
EC2.7.2.11
Descriptionglutamate 5-kinase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6856Ggra6856Gracilaria gracilis GNS1m malegenetig00000056_pilon 685838..687097 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6856.t1.stop1Ggra6856.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 685838..685840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6856.t1.CDS1Ggra6856.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 685838..687097 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6856.t1.exon1Ggra6856.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 685838..687097 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6856.t1.start1Ggra6856.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 687095..687097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6856.t1Ggra6856.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 685838..687097 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6856.t1 ID=Ggra6856.t1|Name=Ggra6856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MSDSLSDSVFSVSPRPIIVVKIGTSTLMRDQNTADTSTISSAAGKGLSNG
SGELAVSSIGLLVDTLLTLRRDGYDVILVTSGAVGVGCRELGVSKRPKVA
DATSAEERAKILADIQAYAAVGQSVLMRTYDALMGMANQKVAQILLTSGD
LSSEYQYINAKNTLSSLLRMGVIPIVNENDTTATEELKYGDNDWLSALVS
TSVGAEWLFLLTDVDQLYTANPRVDKTAKPIDVVENIEYLHVNLSSNTTG
TQWGTGGMKTKITAARLATAAGVRVCLIHGRYPSRAVHFVRNSENKCGTV
FEPLGTPLAVERKKWISNCLPPRGEIRINKSAESMLRVGYSLLTNGVIRC
VKDFDENSAVTICTESGMELARGLCNYSSQFLNKYGGKSGHEISKILCFP
VKDVVVAGDNLALLVGILN*
back to top

spliced messenger RNA

>Ggra6856.t1 ID=Ggra6856.t1|Name=Ggra6856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000056_pilon:685838..687097- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACTCGCTAAGCGATTCTGTTTTCTCTGTATCACCACGACCAAT
AATCGTTGTTAAAATTGGGACGTCAACGCTAATGCGAGATCAGAATACCG
CCGACACTTCCACCATATCTTCTGCCGCTGGAAAAGGACTGAGCAATGGG
TCAGGTGAACTTGCAGTTTCGTCGATTGGCTTGCTCGTAGACACCCTTTT
GACTCTTCGTCGAGACGGATATGACGTAATTCTGGTTACTTCAGGAGCCG
TGGGTGTTGGGTGTAGAGAGCTAGGTGTCTCTAAACGCCCAAAAGTTGCG
GATGCTACATCTGCGGAAGAGCGCGCTAAAATTCTAGCTGACATTCAAGC
GTACGCCGCAGTTGGCCAAAGCGTACTGATGCGGACGTATGATGCGCTCA
TGGGTATGGCGAACCAAAAAGTGGCACAGATTCTCCTGACCAGTGGAGAT
CTGAGTAGCGAATATCAGTACATCAATGCCAAGAATACACTTTCTTCTTT
GTTGAGAATGGGGGTCATCCCAATCGTGAACGAGAACGATACAACAGCGA
CTGAAGAACTAAAATATGGGGACAACGATTGGTTATCCGCGTTGGTAAGT
ACCTCTGTGGGTGCAGAATGGTTGTTTTTGCTCACTGACGTTGATCAGCT
GTACACAGCGAATCCTCGTGTGGATAAAACCGCCAAGCCTATTGATGTTG
TCGAAAACATTGAGTATCTGCATGTCAATCTTTCATCCAATACGACAGGA
ACGCAATGGGGTACAGGGGGCATGAAGACAAAAATCACAGCGGCTCGGCT
CGCAACAGCGGCCGGCGTACGAGTCTGTCTCATACATGGACGTTACCCGT
CACGTGCGGTGCACTTTGTGAGAAACTCGGAGAACAAGTGCGGTACAGTG
TTCGAGCCGTTGGGAACCCCGCTTGCCGTAGAGCGGAAAAAGTGGATCTC
AAATTGCCTGCCGCCCCGTGGGGAGATAAGAATCAACAAATCAGCGGAAT
CGATGTTACGAGTGGGTTACTCTTTGCTAACTAACGGAGTGATACGCTGT
GTGAAAGATTTTGACGAGAACTCCGCGGTGACAATATGCACAGAAAGCGG
AATGGAGCTAGCACGGGGTTTGTGTAACTATTCAAGTCAGTTTCTCAACA
AGTATGGCGGGAAGAGTGGGCATGAGATCTCCAAGATCCTTTGCTTTCCA
GTCAAGGACGTTGTGGTGGCTGGTGACAATTTGGCTTTGTTGGTTGGTAT
ACTGAACTGA
back to top

protein sequence of Ggra6856.t1

>Ggra6856.t1 ID=Ggra6856.t1|Name=Ggra6856.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MSDSLSDSVFSVSPRPIIVVKIGTSTLMRDQNTADTSTISSAAGKGLSNG
SGELAVSSIGLLVDTLLTLRRDGYDVILVTSGAVGVGCRELGVSKRPKVA
DATSAEERAKILADIQAYAAVGQSVLMRTYDALMGMANQKVAQILLTSGD
LSSEYQYINAKNTLSSLLRMGVIPIVNENDTTATEELKYGDNDWLSALVS
TSVGAEWLFLLTDVDQLYTANPRVDKTAKPIDVVENIEYLHVNLSSNTTG
TQWGTGGMKTKITAARLATAAGVRVCLIHGRYPSRAVHFVRNSENKCGTV
FEPLGTPLAVERKKWISNCLPPRGEIRINKSAESMLRVGYSLLTNGVIRC
VKDFDENSAVTICTESGMELARGLCNYSSQFLNKYGGKSGHEISKILCFP
VKDVVVAGDNLALLVGILN*
back to top

mRNA from alignment at tig00000056_pilon:685838..687097-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6856.t1 ID=Ggra6856.t1|Name=Ggra6856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000056_pilon:685838..687097- (Gracilaria gracilis GNS1m male)
ATGTCCGACTCGCTAAGCGATTCTGTTTTCTCTGTATCACCACGACCAAT
AATCGTTGTTAAAATTGGGACGTCAACGCTAATGCGAGATCAGAATACCG
CCGACACTTCCACCATATCTTCTGCCGCTGGAAAAGGACTGAGCAATGGG
TCAGGTGAACTTGCAGTTTCGTCGATTGGCTTGCTCGTAGACACCCTTTT
GACTCTTCGTCGAGACGGATATGACGTAATTCTGGTTACTTCAGGAGCCG
TGGGTGTTGGGTGTAGAGAGCTAGGTGTCTCTAAACGCCCAAAAGTTGCG
GATGCTACATCTGCGGAAGAGCGCGCTAAAATTCTAGCTGACATTCAAGC
GTACGCCGCAGTTGGCCAAAGCGTACTGATGCGGACGTATGATGCGCTCA
TGGGTATGGCGAACCAAAAAGTGGCACAGATTCTCCTGACCAGTGGAGAT
CTGAGTAGCGAATATCAGTACATCAATGCCAAGAATACACTTTCTTCTTT
GTTGAGAATGGGGGTCATCCCAATCGTGAACGAGAACGATACAACAGCGA
CTGAAGAACTAAAATATGGGGACAACGATTGGTTATCCGCGTTGGTAAGT
ACCTCTGTGGGTGCAGAATGGTTGTTTTTGCTCACTGACGTTGATCAGCT
GTACACAGCGAATCCTCGTGTGGATAAAACCGCCAAGCCTATTGATGTTG
TCGAAAACATTGAGTATCTGCATGTCAATCTTTCATCCAATACGACAGGA
ACGCAATGGGGTACAGGGGGCATGAAGACAAAAATCACAGCGGCTCGGCT
CGCAACAGCGGCCGGCGTACGAGTCTGTCTCATACATGGACGTTACCCGT
CACGTGCGGTGCACTTTGTGAGAAACTCGGAGAACAAGTGCGGTACAGTG
TTCGAGCCGTTGGGAACCCCGCTTGCCGTAGAGCGGAAAAAGTGGATCTC
AAATTGCCTGCCGCCCCGTGGGGAGATAAGAATCAACAAATCAGCGGAAT
CGATGTTACGAGTGGGTTACTCTTTGCTAACTAACGGAGTGATACGCTGT
GTGAAAGATTTTGACGAGAACTCCGCGGTGACAATATGCACAGAAAGCGG
AATGGAGCTAGCACGGGGTTTGTGTAACTATTCAAGTCAGTTTCTCAACA
AGTATGGCGGGAAGAGTGGGCATGAGATCTCCAAGATCCTTTGCTTTCCA
GTCAAGGACGTTGTGGTGGCTGGTGACAATTTGGCTTTGTTGGTTGGTAT
ACTGAACTGA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:685838..687097-

>Ggra6856.t1 ID=Ggra6856.t1|Name=Ggra6856.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000056_pilon:685838..687097- (Gracilaria gracilis GNS1m male)
ATGTCCGACTCGCTAAGCGATTCTGTTTTCTCTGTATCACCACGACCAAT
AATCGTTGTTAAAATTGGGACGTCAACGCTAATGCGAGATCAGAATACCG
CCGACACTTCCACCATATCTTCTGCCGCTGGAAAAGGACTGAGCAATGGG
TCAGGTGAACTTGCAGTTTCGTCGATTGGCTTGCTCGTAGACACCCTTTT
GACTCTTCGTCGAGACGGATATGACGTAATTCTGGTTACTTCAGGAGCCG
TGGGTGTTGGGTGTAGAGAGCTAGGTGTCTCTAAACGCCCAAAAGTTGCG
GATGCTACATCTGCGGAAGAGCGCGCTAAAATTCTAGCTGACATTCAAGC
GTACGCCGCAGTTGGCCAAAGCGTACTGATGCGGACGTATGATGCGCTCA
TGGGTATGGCGAACCAAAAAGTGGCACAGATTCTCCTGACCAGTGGAGAT
CTGAGTAGCGAATATCAGTACATCAATGCCAAGAATACACTTTCTTCTTT
GTTGAGAATGGGGGTCATCCCAATCGTGAACGAGAACGATACAACAGCGA
CTGAAGAACTAAAATATGGGGACAACGATTGGTTATCCGCGTTGGTAAGT
ACCTCTGTGGGTGCAGAATGGTTGTTTTTGCTCACTGACGTTGATCAGCT
GTACACAGCGAATCCTCGTGTGGATAAAACCGCCAAGCCTATTGATGTTG
TCGAAAACATTGAGTATCTGCATGTCAATCTTTCATCCAATACGACAGGA
ACGCAATGGGGTACAGGGGGCATGAAGACAAAAATCACAGCGGCTCGGCT
CGCAACAGCGGCCGGCGTACGAGTCTGTCTCATACATGGACGTTACCCGT
CACGTGCGGTGCACTTTGTGAGAAACTCGGAGAACAAGTGCGGTACAGTG
TTCGAGCCGTTGGGAACCCCGCTTGCCGTAGAGCGGAAAAAGTGGATCTC
AAATTGCCTGCCGCCCCGTGGGGAGATAAGAATCAACAAATCAGCGGAAT
CGATGTTACGAGTGGGTTACTCTTTGCTAACTAACGGAGTGATACGCTGT
GTGAAAGATTTTGACGAGAACTCCGCGGTGACAATATGCACAGAAAGCGG
AATGGAGCTAGCACGGGGTTTGTGTAACTATTCAAGTCAGTTTCTCAACA
AGTATGGCGGGAAGAGTGGGCATGAGATCTCCAAGATCCTTTGCTTTCCA
GTCAAGGACGTTGTGGTGGCTGGTGACAATTTGGCTTTGTTGGTTGGTAT
ACTGAACTGA
back to top