Ggra6732.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6732.t1
Unique NameGgra6732.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:316719..317354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_00996T0
PFAMsTPR_1,TPR_2,TPR_8
Max annot lvl2759|Eukaryota
GOsGO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030162,GO:0030163,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033554,GO:0034450,GO:0034605,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045862,GO:0046332,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0060090,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070647,GO:0070887,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
Evalue5.42e-30
EggNOG OGsKOG4234@1|root,KOG4234@2759|Eukaryota
Descriptionprotein binding, bridging
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6732Ggra6732Gracilaria gracilis GNS1m malegenetig00000056_pilon 316719..317354 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6732.t1.stop1Ggra6732.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 316719..316721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6732.t1.CDS1Ggra6732.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 316719..317354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6732.t1.exon1Ggra6732.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 316719..317354 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6732.t1.start1Ggra6732.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 317352..317354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6732.t1Ggra6732.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 316719..317354 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6732.t1 ID=Ggra6732.t1|Name=Ggra6732.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MSSARDAEEEYMRMRMASTKLSDEDQSESQAPETKANPELDDTITADAAR
VLKEEGNALYKSGDFAKAIEKYSLASKSAHASQEDRAVYFANRAAAHLKL
QDFEQVVKDASKALELKPGYVKALSRRQEAREALKEWHGALQDAQELKAS
SSEIKRLQFLAQEKDKKDQAEALESLKGLGDSILSNFGMSLDDFAMDKDP
ETGSYSIRMKQ*
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spliced messenger RNA

>Ggra6732.t1 ID=Ggra6732.t1|Name=Ggra6732.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000056_pilon:316719..317354- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTGCACGAGATGCCGAAGAAGAGTATATGCGGATGCGGATGGC
CTCAACAAAGCTTTCTGATGAAGATCAATCCGAGTCCCAAGCCCCAGAAA
CCAAGGCCAATCCTGAATTGGACGACACCATAACAGCGGATGCAGCTCGC
GTCCTGAAAGAGGAGGGCAACGCCTTGTATAAGTCCGGCGACTTCGCTAA
AGCCATTGAGAAATATTCACTCGCTTCCAAGAGTGCTCATGCAAGCCAAG
AGGATCGAGCGGTGTATTTCGCCAATCGCGCTGCTGCCCATTTGAAGCTG
CAGGACTTCGAACAAGTGGTTAAAGATGCTTCTAAAGCACTAGAACTCAA
ACCTGGTTATGTGAAGGCTCTTAGCAGAAGACAAGAAGCTCGTGAAGCGT
TGAAGGAATGGCATGGAGCATTACAAGACGCTCAGGAACTGAAAGCTTCA
TCATCGGAGATCAAACGATTGCAATTCCTTGCCCAGGAGAAGGATAAAAA
GGATCAAGCAGAGGCGTTGGAATCCCTCAAAGGGCTCGGTGACTCCATTC
TGTCAAACTTCGGTATGAGCCTTGATGATTTTGCAATGGATAAGGATCCT
GAGACAGGCTCATATAGCATCCGCATGAAGCAATAA
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protein sequence of Ggra6732.t1

>Ggra6732.t1 ID=Ggra6732.t1|Name=Ggra6732.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MSSARDAEEEYMRMRMASTKLSDEDQSESQAPETKANPELDDTITADAAR
VLKEEGNALYKSGDFAKAIEKYSLASKSAHASQEDRAVYFANRAAAHLKL
QDFEQVVKDASKALELKPGYVKALSRRQEAREALKEWHGALQDAQELKAS
SSEIKRLQFLAQEKDKKDQAEALESLKGLGDSILSNFGMSLDDFAMDKDP
ETGSYSIRMKQ*
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mRNA from alignment at tig00000056_pilon:316719..317354-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6732.t1 ID=Ggra6732.t1|Name=Ggra6732.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000056_pilon:316719..317354- (Gracilaria gracilis GNS1m male)
ATGTCTTCTGCACGAGATGCCGAAGAAGAGTATATGCGGATGCGGATGGC
CTCAACAAAGCTTTCTGATGAAGATCAATCCGAGTCCCAAGCCCCAGAAA
CCAAGGCCAATCCTGAATTGGACGACACCATAACAGCGGATGCAGCTCGC
GTCCTGAAAGAGGAGGGCAACGCCTTGTATAAGTCCGGCGACTTCGCTAA
AGCCATTGAGAAATATTCACTCGCTTCCAAGAGTGCTCATGCAAGCCAAG
AGGATCGAGCGGTGTATTTCGCCAATCGCGCTGCTGCCCATTTGAAGCTG
CAGGACTTCGAACAAGTGGTTAAAGATGCTTCTAAAGCACTAGAACTCAA
ACCTGGTTATGTGAAGGCTCTTAGCAGAAGACAAGAAGCTCGTGAAGCGT
TGAAGGAATGGCATGGAGCATTACAAGACGCTCAGGAACTGAAAGCTTCA
TCATCGGAGATCAAACGATTGCAATTCCTTGCCCAGGAGAAGGATAAAAA
GGATCAAGCAGAGGCGTTGGAATCCCTCAAAGGGCTCGGTGACTCCATTC
TGTCAAACTTCGGTATGAGCCTTGATGATTTTGCAATGGATAAGGATCCT
GAGACAGGCTCATATAGCATCCGCATGAAGCAATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:316719..317354-

>Ggra6732.t1 ID=Ggra6732.t1|Name=Ggra6732.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000056_pilon:316719..317354- (Gracilaria gracilis GNS1m male)
ATGTCTTCTGCACGAGATGCCGAAGAAGAGTATATGCGGATGCGGATGGC
CTCAACAAAGCTTTCTGATGAAGATCAATCCGAGTCCCAAGCCCCAGAAA
CCAAGGCCAATCCTGAATTGGACGACACCATAACAGCGGATGCAGCTCGC
GTCCTGAAAGAGGAGGGCAACGCCTTGTATAAGTCCGGCGACTTCGCTAA
AGCCATTGAGAAATATTCACTCGCTTCCAAGAGTGCTCATGCAAGCCAAG
AGGATCGAGCGGTGTATTTCGCCAATCGCGCTGCTGCCCATTTGAAGCTG
CAGGACTTCGAACAAGTGGTTAAAGATGCTTCTAAAGCACTAGAACTCAA
ACCTGGTTATGTGAAGGCTCTTAGCAGAAGACAAGAAGCTCGTGAAGCGT
TGAAGGAATGGCATGGAGCATTACAAGACGCTCAGGAACTGAAAGCTTCA
TCATCGGAGATCAAACGATTGCAATTCCTTGCCCAGGAGAAGGATAAAAA
GGATCAAGCAGAGGCGTTGGAATCCCTCAAAGGGCTCGGTGACTCCATTC
TGTCAAACTTCGGTATGAGCCTTGATGATTTTGCAATGGATAAGGATCCT
GAGACAGGCTCATATAGCATCCGCATGAAGCAATAA
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