Ggra6869.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6869.t1
Unique NameGgra6869.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Homology
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A2V3ILK7 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILK7_9FLOR)

HSP 1 Score: 184 bits (466), Expect = 9.010e-58
Identity = 94/128 (73.44%), Postives = 102/128 (79.69%), Query Frame = 0
Query:    1 MATGKRKRQQAKLDVESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNPK 128
            M TGKRKR+QAKLD ++RSGF +  APLGVVDT K  +FDVGPLSVL  AV+N+  VLINVRNNKKLLA VKAFDRHCNMVLTNVTEIWYEY K+            RTISKMFLRGDSVILVLLNPK
Sbjct:    1 MVTGKRKREQAKLDKDTRSGFNDPDAPLGVVDTGKADEFDVGPLSVLKKAVVNETAVLINVRNNKKLLARVKAFDRHCNMVLTNVTEIWYEYPKTAKGGKTQRVEKTRTISKMFLRGDSVILVLLNPK 128          
BLAST of Ggra6869.t1 vs. uniprot
Match: R7QQD6 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQD6_CHOCR)

HSP 1 Score: 144 bits (362), Expect = 6.300e-42
Identity = 79/129 (61.24%), Postives = 92/129 (71.32%), Query Frame = 0
Query:    1 MATGKRKRQQAKL-DVESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNPK 128
            M+ GKRKR + KL  V++R+GF++  A  G+VDT K  DF VGPLSVL  AV  D  VLIN+R+NKKLLA VKAFDRHCNM+L +VTEIW E+ K             R ISKMFLRGDSVILVLLNPK
Sbjct:    1 MSAGKRKRDREKLAPVDNRAGFSSLDAVPGMVDTDKIDDFQVGPLSVLKRAVEQDIQVLINLRSNKKLLARVKAFDRHCNMILQHVTEIWVEHHKGPNGGKPQRLEKTRVISKMFLRGDSVILVLLNPK 129          
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A7S0BTF8 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BTF8_9RHOD)

HSP 1 Score: 125 bits (313), Expect = 1.430e-34
Identity = 65/112 (58.04%), Postives = 75/112 (66.96%), Query Frame = 0
Query:   16 ESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNP 127
            ++R+GFTN   P G+VDT K  +F  GP SVL  +V ++  VLIN RNNKKLL  VKAFDRH NM+L NV E+W EY KS            R ISKMFLRGDSVILVL NP
Sbjct:   10 DTRAGFTNPDKPTGLVDTEKVDEFATGPFSVLTQSVKDNKQVLINCRNNKKLLGRVKAFDRHMNMILENVKEMWIEYPKSSKGGKARPVNKDRFISKMFLRGDSVILVLRNP 121          
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A7S0ZFB3 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFB3_9RHOD)

HSP 1 Score: 115 bits (288), Expect = 9.720e-31
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   15 VESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNP 127
            V++RSG  +    LGVVDT K  +F+ GPLSVL   V ++  VLIN+R+N+KLLA VKAFDRH NMVL +V E+W E  KS            R ISKMFLRGDSVILVL NP
Sbjct:   12 VDNRSGVGDPDQILGVVDTEKAEEFEKGPLSVLVECVKHELQVLINLRSNRKLLAKVKAFDRHFNMVLEDVKEMWIETPKSSQGRKAKPIHKDRYISKMFLRGDSVILVLKNP 124          
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A7S3XJ52 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XJ52_OXYMA)

HSP 1 Score: 112 bits (281), Expect = 1.120e-29
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 0
Query:   35 KQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNPK 128
            ++ +FDVGPLSVL NAV  ++ +LIN RNN+KLLA VKAFDRHCNMVL  V EIW E  +             R ISK+FLRGDSVILVLLNPK
Sbjct:   32 EKDNFDVGPLSVLQNAVKENSQILINCRNNRKLLARVKAFDRHCNMVLEQVREIWTEVPRGSGKKKGKAVNKDRFISKLFLRGDSVILVLLNPK 125          
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A016WCC7 (Small nuclear ribonucleoprotein Sm D2 n=15 Tax=Strongylida TaxID=6308 RepID=A0A016WCC7_9BILA)

HSP 1 Score: 112 bits (280), Expect = 1.460e-29
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0
Query:   35 KQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXX-RTISKMFLRGDSVILVLLNP 127
            +Q +F+VGPLS+LNN+V N+A VLIN RNNKKLL  VKAFDRHCNMVL NV E+W E  K+             R ISKMFLRGDSVILVL NP
Sbjct:   24 EQEEFNVGPLSILNNSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEQPKTGKGKKKAKAVPKDRFISKMFLRGDSVILVLKNP 117          
BLAST of Ggra6869.t1 vs. uniprot
Match: M2XQW5 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XQW5_GALSU)

HSP 1 Score: 110 bits (275), Expect = 7.650e-29
Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = 0
Query:   16 ESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNPK 128
            ++RSG  +   PLG+VDT K  +F  GPLS+L + V +   VLINVRN+KKLL  VKAFDRH NM+L NV EIW E  KS            R I KMFLRGDSV+LVL  P+
Sbjct:   10 DTRSGMGDPNQPLGIVDTVKSEEFSQGPLSLLVDCVKDGTPVLINVRNSKKLLGKVKAFDRHFNMILENVKEIWTEIPKSKKARPVNKD---RFIPKMFLRGDSVVLVLKAPQ 119          
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A368GHL7 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368GHL7_ANCCA)

HSP 1 Score: 112 bits (280), Expect = 8.450e-29
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0
Query:   35 KQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXX-RTISKMFLRGDSVILVLLNP 127
            +Q +F+VGPLS+LNN+V N+A VLIN RNNKKLL  VKAFDRHCNMVL NV E+W E  K+             R ISKMFLRGDSVILVL NP
Sbjct:   87 EQEEFNVGPLSILNNSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEQPKTGKGKKKAKAVPKDRFISKMFLRGDSVILVLKNP 180          
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A336MLW6 (Small nuclear ribonucleoprotein Sm D2 n=2 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MLW6_CULSO)

HSP 1 Score: 110 bits (275), Expect = 9.100e-29
Identity = 57/93 (61.29%), Postives = 64/93 (68.82%), Query Frame = 0
Query:   35 KQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNP 127
            +Q +FD GPLSVL  +V N+  VLIN RNNKKLL  VKAFDRHCNMVL NV E+W E  ++            R ISKMFLRGDSVILVL NP
Sbjct:   26 EQEEFDTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKAKPVNKDRFISKMFLRGDSVILVLRNP 118          
BLAST of Ggra6869.t1 vs. uniprot
Match: A0A7S2R8G0 (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8G0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.080e-28
Identity = 65/114 (57.02%), Postives = 74/114 (64.91%), Query Frame = 0
Query:   19 SGFTNAAAPLGVV-----DTAKQHDFDVGPLSVLNNAVLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSXXXXXXXXXXXXRTISKMFLRGDSVILVLLNP 127
            +GF+ A A +        +T  + DF  GPLSVL ++V N++ VLINVRNN KLLA VKAFDRHCNMVL NV EIW E  KS            R ISKMFLRGDSVILVL NP
Sbjct:   17 AGFSRAMASIDDKRTLDGETKAEEDFSTGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEIWTETPKSGKGKAKPMNKE-RHISKMFLRGDSVILVLKNP 129          
The following BLAST results are available for this feature:
BLAST of Ggra6869.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILK79.010e-5873.44Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Grac... [more]
R7QQD66.300e-4261.24Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Chon... [more]
A0A7S0BTF81.430e-3458.04Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Rhod... [more]
A0A7S0ZFB39.720e-3156.64Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Tims... [more]
A0A7S3XJ521.120e-2961.70Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Oxyr... [more]
A0A016WCC71.460e-2963.83Small nuclear ribonucleoprotein Sm D2 n=15 Tax=Str... [more]
M2XQW57.650e-2953.98Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Gald... [more]
A0A368GHL78.450e-2963.83Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ancy... [more]
A0A336MLW69.100e-2961.29Small nuclear ribonucleoprotein Sm D2 n=2 Tax=Culi... [more]
A0A7S2R8G01.080e-2857.02Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Rhiz... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 45..125
e-value: 1.1E-14
score: 64.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 52..123
e-value: 2.0E-15
score: 56.2
NoneNo IPR availableGENE3D2.30.30.100coord: 37..128
e-value: 5.3E-32
score: 111.5
NoneNo IPR availablePANTHERPTHR12777:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 32..128
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 32..128
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 39..127
e-value: 3.79506E-46
score: 142.47
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 42..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:719928..720538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6869.t1Ggra6869.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 719928..720538 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6869.t1 ID=Ggra6869.t1|Name=Ggra6869.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MATGKRKRQQAKLDVESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNA
VLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSAKGAK
TQKTEKTRTISKMFLRGDSVILVLLNPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027248Sm_D2
IPR010920LSM_dom_sf