Ggra6869.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6869.t1
Unique NameGgra6869.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:719928..720538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709157.1
PFAMsLSM
Max annot lvl2759|Eukaryota
KEGG koko:K11096
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1902494,GO:1990234,GO:1990904
Evalue1.33e-29
EggNOG OGsCOG1958@1|root,KOG3459@2759|Eukaryota
Descriptionspliceosomal snRNP assembly
COG categoryK
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6869Ggra6869Gracilaria gracilis GNS1m malegenetig00000056_pilon 719928..720538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6869.t1Ggra6869.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 719928..720538 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6869.t1.stop1Ggra6869.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 719928..719930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6869.t1.CDS1Ggra6869.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 719928..720074 -
Ggra6869.t1.CDS2Ggra6869.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 720174..720396 -
Ggra6869.t1.CDS3Ggra6869.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 720522..720538 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6869.t1.exon1Ggra6869.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 719928..720074 -
Ggra6869.t1.exon2Ggra6869.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 720174..720396 -
Ggra6869.t1.exon3Ggra6869.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 720522..720538 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6869.t1.intron1Ggra6869.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 720075..720173 -
Ggra6869.t1.intron2Ggra6869.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 720397..720521 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6869.t1.start1Ggra6869.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 720536..720538 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6869.t1 ID=Ggra6869.t1|Name=Ggra6869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MATGKRKRQQAKLDVESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNA
VLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSAKGAK
TQKTEKTRTISKMFLRGDSVILVLLNPK*
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spliced messenger RNA

>Ggra6869.t1 ID=Ggra6869.t1|Name=Ggra6869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000056_pilon:719928..720538- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCGGCAAGAGAAAACGGCAGCAAGCCAAGCTGGACGTCGAGTC
GCGCTCGGGCTTCACCAACGCAGCCGCGCCGCTGGGCGTGGTCGACACCG
CAAAGCAGCACGACTTTGACGTCGGCCCGCTCTCCGTGCTCAACAACGCC
GTGCTCAACGACGCCGTCGTGCTCATCAACGTGCGCAACAACAAGAAACT
GCTCGCCAACGTCAAGGCCTTTGATCGCCACTGCAACATGGTGCTCACCA
ACGTCACAGAGATCTGGTACGAGTATGCAAAGTCCGCTAAAGGCGCCAAA
ACTCAAAAGACAGAAAAGACGCGCACCATATCCAAGATGTTCTTGCGCGG
AGACTCGGTCATCCTCGTCCTACTCAACCCCAAGTAG
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protein sequence of Ggra6869.t1

>Ggra6869.t1 ID=Ggra6869.t1|Name=Ggra6869.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MATGKRKRQQAKLDVESRSGFTNAAAPLGVVDTAKQHDFDVGPLSVLNNA
VLNDAVVLINVRNNKKLLANVKAFDRHCNMVLTNVTEIWYEYAKSAKGAK
TQKTEKTRTISKMFLRGDSVILVLLNPK*
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mRNA from alignment at tig00000056_pilon:719928..720538-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6869.t1 ID=Ggra6869.t1|Name=Ggra6869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=611bp|location=Sequence derived from alignment at tig00000056_pilon:719928..720538- (Gracilaria gracilis GNS1m male)
ATGGCAACCGGCAAGAGGTAAGCAACGCCCCCCCCGGCCCCCACCGCACA
GCGCCCCCATCGCGCAGCATGCAATCTAACCAGCGCCCACCTGTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCGCGCGCTTAGAAAACGGC
AGCAAGCCAAGCTGGACGTCGAGTCGCGCTCGGGCTTCACCAACGCAGCC
GCGCCGCTGGGCGTGGTCGACACCGCAAAGCAGCACGACTTTGACGTCGG
CCCGCTCTCCGTGCTCAACAACGCCGTGCTCAACGACGCCGTCGTGCTCA
TCAACGTGCGCAACAACAAGAAACTGCTCGCCAACGTCAAGGCCTTTGAT
CGCCACTGCAACATGGTACGTGCGCCATTCTCTACGCGCTGCAAAACAAA
AAAGGAGATACCTTACTAACCTACTTGCAACCTGCAAACTTCAACAATCT
GCCCACACAACCAGGTGCTCACCAACGTCACAGAGATCTGGTACGAGTAT
GCAAAGTCCGCTAAAGGCGCCAAAACTCAAAAGACAGAAAAGACGCGCAC
CATATCCAAGATGTTCTTGCGCGGAGACTCGGTCATCCTCGTCCTACTCA
ACCCCAAGTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:719928..720538-

>Ggra6869.t1 ID=Ggra6869.t1|Name=Ggra6869.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000056_pilon:719928..720538- (Gracilaria gracilis GNS1m male)
ATGGCAACCGGCAAGAGAAAACGGCAGCAAGCCAAGCTGGACGTCGAGTC
GCGCTCGGGCTTCACCAACGCAGCCGCGCCGCTGGGCGTGGTCGACACCG
CAAAGCAGCACGACTTTGACGTCGGCCCGCTCTCCGTGCTCAACAACGCC
GTGCTCAACGACGCCGTCGTGCTCATCAACGTGCGCAACAACAAGAAACT
GCTCGCCAACGTCAAGGCCTTTGATCGCCACTGCAACATGGTGCTCACCA
ACGTCACAGAGATCTGGTACGAGTATGCAAAGTCCGCTAAAGGCGCCAAA
ACTCAAAAGACAGAAAAGACGCGCACCATATCCAAGATGTTCTTGCGCGG
AGACTCGGTCATCCTCGTCCTACTCAACCCCAAGTAG
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