Ggra6815.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6815.t1
Unique Name	Ggra6815.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	713

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:601292..603430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ19306
PFAMs	DEAD,Helicase_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13181
GOs	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Evalue	2.32e-153
EggNOG OGs	COG0513@1\|root,KOG0338@2759\|Eukaryota,37IK2@33090\|Viridiplantae,3GAC2@35493\|Streptophyta
EC	3.6.4.13
Description	Belongs to the DEAD box helicase family
COG category	A
BRITE	ko00000,ko01000,ko03009,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6815	Ggra6815	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 601292..603430 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6815.t1.start1	Ggra6815.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 601292..601294 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6815.t1.CDS1	Ggra6815.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 601292..603430 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6815.t1.exon1	Ggra6815.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 601292..603430 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6815.t1.stop1	Ggra6815.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 603428..603430 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6815.t1	Ggra6815.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 601292..603430 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:601292..603430+
coding sequence from alignment at tig00000056_pilon:601292..603430+

mRNA sequence

>Ggra6815.t1 ID=Ggra6815.t1|Name=Ggra6815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=713bp
MEDPDGFVRTLPDAVDGDFSDDDASELMFGSDEDGEANGTAAPFFEAHKP
AAWDLSAARKEAAKLRPFQTTIDEKIRGALGRINQQKSSPERHAPGGHNP
DGDERDGDERDGDERDGDGRDGDGRDGDGRDGDGRDGDGRDSDADLTHKR
GRETEEAEVDDDVAEGDAEEDEKRDERETNKDKQLSKLKKGRKRLRKEKS
AAKSFQQLHLSKPLQKAVDVLQWNQPTPIQASAIPYVLAGRDICASAVTG
SGKTAAFVLPVLERLLQAGMDNSTRVIILLPTRELAAQCHAVVQSLAKYT
SIRAALAVGGLSNKAQEVALRTHPHIIVATPGRLIDHIRNAHSFSLDDIE
ILIMDEADRLLEMGFQAEVQQIVSATPENRQTLLFSATMNTQLNALVKLS
LQNPINLNIDPMFNVAETLSQEFVKLRPAFESSKNALLFSLVSRTFKTRT
IVFFRHKVTAHHFKILFGLSKLKSAELHGNLTQAQRLAALDDFRQGTVDF
LLCTDLAARGLDIAGVETVVNYDMPGELKEYVHRVGRTARAGSAGRACSI
VCTGSNDERKLLKNIAKRAKGKLVARVVPPSVIGKWSAWLGRLQPALRAV
LKEERQEKEMRLAEMELNKASNLMKHSDQIYARPARTWFQTEGEKKDEKA
KARREKGLPESVDEKTRRVAQQKKAAEMELRKRKREVTEREESYSKQRAE
ARTTKRKKRRRR*

spliced messenger RNA

>Ggra6815.t1 ID=Ggra6815.t1|Name=Ggra6815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2139bp|location=Sequence derived from alignment at tig00000056_pilon:601292..603430+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGATCCGGATGGCTTCGTGCGCACACTGCCTGACGCCGTCGACGG
CGACTTCTCCGACGATGACGCGTCGGAGCTCATGTTCGGCTCAGATGAGG
ATGGCGAGGCAAATGGTACAGCAGCGCCTTTTTTCGAGGCTCACAAGCCA
GCCGCCTGGGATCTGAGCGCGGCGCGGAAGGAGGCGGCGAAGCTCAGGCC
GTTTCAGACCACCATTGATGAAAAGATTCGCGGCGCGCTGGGAAGGATTA
ATCAGCAAAAGTCATCGCCTGAGCGCCATGCACCTGGCGGCCATAATCCT
GATGGCGATGAACGTGATGGCGATGAACGTGATGGCGATGAACGTGATGG
CGATGGGCGTGATGGCGATGGGCGTGATGGCGATGGGCGTGATGGCGATG
GGCGTGATGGCGATGGGCGTGATAGCGATGCGGATTTGACGCACAAACGC
GGCCGAGAGACCGAAGAGGCCGAGGTGGATGATGACGTAGCCGAGGGTGA
TGCGGAGGAAGACGAAAAGCGCGATGAGCGAGAAACTAACAAAGATAAGC
AGCTTTCCAAGCTCAAGAAGGGGCGAAAGCGACTTCGCAAGGAGAAGTCT
GCAGCGAAGTCATTTCAGCAGCTTCATCTGTCGAAGCCTTTACAGAAGGC
TGTTGACGTCTTGCAGTGGAACCAACCCACGCCCATACAGGCTAGTGCGA
TTCCGTATGTGCTTGCCGGGCGCGATATTTGCGCTAGTGCTGTTACGGGT
TCCGGTAAGACGGCTGCGTTTGTGCTGCCAGTGTTAGAGCGTCTCTTGCA
AGCTGGTATGGACAACTCAACTCGCGTTATCATTTTGTTGCCCACTCGTG
AATTGGCTGCCCAATGTCATGCCGTTGTCCAGAGTCTTGCGAAGTATACT
TCTATCCGAGCTGCCTTGGCTGTTGGTGGCTTATCGAACAAGGCTCAGGA
AGTTGCATTACGTACACACCCTCATATTATTGTCGCGACGCCTGGGAGAC
TGATTGATCATATCAGGAACGCTCATAGTTTCTCACTTGATGATATCGAG
ATTCTCATCATGGATGAGGCTGATCGTTTGTTGGAAATGGGATTTCAGGC
AGAGGTGCAGCAGATTGTCAGTGCTACACCCGAGAATCGACAAACACTTT
TGTTTTCCGCCACCATGAACACACAATTGAACGCTCTAGTCAAACTGTCA
TTGCAAAACCCGATCAACTTGAATATAGATCCCATGTTTAATGTTGCGGA
AACTCTTTCGCAAGAGTTTGTGAAACTGCGACCAGCATTCGAAAGCAGCA
AGAACGCCCTCTTATTCTCACTTGTTTCGCGAACATTCAAGACACGTACC
ATTGTTTTCTTCCGGCATAAGGTGACCGCACATCATTTCAAGATTCTTTT
TGGGTTGAGTAAGCTGAAATCCGCAGAACTCCATGGAAATTTGACTCAGG
CACAACGTCTTGCGGCGCTCGATGATTTCAGACAAGGAACCGTTGACTTC
TTGCTGTGCACTGATTTGGCGGCTCGCGGATTAGACATTGCAGGGGTGGA
AACAGTTGTCAATTATGACATGCCCGGAGAACTGAAGGAATATGTACATC
GAGTTGGCCGTACTGCTCGTGCGGGAAGCGCTGGACGAGCTTGCAGCATA
GTTTGTACAGGTAGTAACGATGAGCGCAAATTGTTGAAGAATATTGCGAA
ACGAGCTAAAGGGAAGCTAGTGGCGCGAGTGGTACCACCTTCCGTGATTG
GGAAGTGGAGCGCTTGGCTAGGCAGATTGCAACCGGCGTTGAGGGCTGTT
TTGAAGGAGGAAAGGCAAGAGAAAGAAATGAGGTTGGCGGAAATGGAGCT
GAACAAAGCGAGCAACTTGATGAAGCATTCTGATCAGATTTATGCGCGTC
CTGCACGCACTTGGTTCCAGACAGAAGGTGAGAAAAAGGATGAGAAGGCT
AAAGCAAGACGTGAGAAAGGCCTGCCAGAAAGCGTTGATGAGAAGACGAG
ACGCGTTGCGCAACAGAAGAAAGCCGCCGAAATGGAACTGCGGAAGAGAA
AAAGGGAAGTAACAGAGAGGGAGGAGTCGTACTCCAAACAACGAGCTGAG
GCTCGGACTACCAAGCGAAAGAAGAGGAGACGGAGATAG

protein sequence of Ggra6815.t1

>Ggra6815.t1 ID=Ggra6815.t1|Name=Ggra6815.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=713bp
MEDPDGFVRTLPDAVDGDFSDDDASELMFGSDEDGEANGTAAPFFEAHKP
AAWDLSAARKEAAKLRPFQTTIDEKIRGALGRINQQKSSPERHAPGGHNP
DGDERDGDERDGDERDGDGRDGDGRDGDGRDGDGRDGDGRDSDADLTHKR
GRETEEAEVDDDVAEGDAEEDEKRDERETNKDKQLSKLKKGRKRLRKEKS
AAKSFQQLHLSKPLQKAVDVLQWNQPTPIQASAIPYVLAGRDICASAVTG
SGKTAAFVLPVLERLLQAGMDNSTRVIILLPTRELAAQCHAVVQSLAKYT
SIRAALAVGGLSNKAQEVALRTHPHIIVATPGRLIDHIRNAHSFSLDDIE
ILIMDEADRLLEMGFQAEVQQIVSATPENRQTLLFSATMNTQLNALVKLS
LQNPINLNIDPMFNVAETLSQEFVKLRPAFESSKNALLFSLVSRTFKTRT
IVFFRHKVTAHHFKILFGLSKLKSAELHGNLTQAQRLAALDDFRQGTVDF
LLCTDLAARGLDIAGVETVVNYDMPGELKEYVHRVGRTARAGSAGRACSI
VCTGSNDERKLLKNIAKRAKGKLVARVVPPSVIGKWSAWLGRLQPALRAV
LKEERQEKEMRLAEMELNKASNLMKHSDQIYARPARTWFQTEGEKKDEKA
KARREKGLPESVDEKTRRVAQQKKAAEMELRKRKREVTEREESYSKQRAE
ARTTKRKKRRRR*

mRNA from alignment at tig00000056_pilon:601292..603430+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6815.t1 ID=Ggra6815.t1|Name=Ggra6815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2139bp|location=Sequence derived from alignment at tig00000056_pilon:601292..603430+ (Gracilaria gracilis GNS1m male)
ATGGAGGATCCGGATGGCTTCGTGCGCACACTGCCTGACGCCGTCGACGG
CGACTTCTCCGACGATGACGCGTCGGAGCTCATGTTCGGCTCAGATGAGG
ATGGCGAGGCAAATGGTACAGCAGCGCCTTTTTTCGAGGCTCACAAGCCA
GCCGCCTGGGATCTGAGCGCGGCGCGGAAGGAGGCGGCGAAGCTCAGGCC
GTTTCAGACCACCATTGATGAAAAGATTCGCGGCGCGCTGGGAAGGATTA
ATCAGCAAAAGTCATCGCCTGAGCGCCATGCACCTGGCGGCCATAATCCT
GATGGCGATGAACGTGATGGCGATGAACGTGATGGCGATGAACGTGATGG
CGATGGGCGTGATGGCGATGGGCGTGATGGCGATGGGCGTGATGGCGATG
GGCGTGATGGCGATGGGCGTGATAGCGATGCGGATTTGACGCACAAACGC
GGCCGAGAGACCGAAGAGGCCGAGGTGGATGATGACGTAGCCGAGGGTGA
TGCGGAGGAAGACGAAAAGCGCGATGAGCGAGAAACTAACAAAGATAAGC
AGCTTTCCAAGCTCAAGAAGGGGCGAAAGCGACTTCGCAAGGAGAAGTCT
GCAGCGAAGTCATTTCAGCAGCTTCATCTGTCGAAGCCTTTACAGAAGGC
TGTTGACGTCTTGCAGTGGAACCAACCCACGCCCATACAGGCTAGTGCGA
TTCCGTATGTGCTTGCCGGGCGCGATATTTGCGCTAGTGCTGTTACGGGT
TCCGGTAAGACGGCTGCGTTTGTGCTGCCAGTGTTAGAGCGTCTCTTGCA
AGCTGGTATGGACAACTCAACTCGCGTTATCATTTTGTTGCCCACTCGTG
AATTGGCTGCCCAATGTCATGCCGTTGTCCAGAGTCTTGCGAAGTATACT
TCTATCCGAGCTGCCTTGGCTGTTGGTGGCTTATCGAACAAGGCTCAGGA
AGTTGCATTACGTACACACCCTCATATTATTGTCGCGACGCCTGGGAGAC
TGATTGATCATATCAGGAACGCTCATAGTTTCTCACTTGATGATATCGAG
ATTCTCATCATGGATGAGGCTGATCGTTTGTTGGAAATGGGATTTCAGGC
AGAGGTGCAGCAGATTGTCAGTGCTACACCCGAGAATCGACAAACACTTT
TGTTTTCCGCCACCATGAACACACAATTGAACGCTCTAGTCAAACTGTCA
TTGCAAAACCCGATCAACTTGAATATAGATCCCATGTTTAATGTTGCGGA
AACTCTTTCGCAAGAGTTTGTGAAACTGCGACCAGCATTCGAAAGCAGCA
AGAACGCCCTCTTATTCTCACTTGTTTCGCGAACATTCAAGACACGTACC
ATTGTTTTCTTCCGGCATAAGGTGACCGCACATCATTTCAAGATTCTTTT
TGGGTTGAGTAAGCTGAAATCCGCAGAACTCCATGGAAATTTGACTCAGG
CACAACGTCTTGCGGCGCTCGATGATTTCAGACAAGGAACCGTTGACTTC
TTGCTGTGCACTGATTTGGCGGCTCGCGGATTAGACATTGCAGGGGTGGA
AACAGTTGTCAATTATGACATGCCCGGAGAACTGAAGGAATATGTACATC
GAGTTGGCCGTACTGCTCGTGCGGGAAGCGCTGGACGAGCTTGCAGCATA
GTTTGTACAGGTAGTAACGATGAGCGCAAATTGTTGAAGAATATTGCGAA
ACGAGCTAAAGGGAAGCTAGTGGCGCGAGTGGTACCACCTTCCGTGATTG
GGAAGTGGAGCGCTTGGCTAGGCAGATTGCAACCGGCGTTGAGGGCTGTT
TTGAAGGAGGAAAGGCAAGAGAAAGAAATGAGGTTGGCGGAAATGGAGCT
GAACAAAGCGAGCAACTTGATGAAGCATTCTGATCAGATTTATGCGCGTC
CTGCACGCACTTGGTTCCAGACAGAAGGTGAGAAAAAGGATGAGAAGGCT
AAAGCAAGACGTGAGAAAGGCCTGCCAGAAAGCGTTGATGAGAAGACGAG
ACGCGTTGCGCAACAGAAGAAAGCCGCCGAAATGGAACTGCGGAAGAGAA
AAAGGGAAGTAACAGAGAGGGAGGAGTCGTACTCCAAACAACGAGCTGAG
GCTCGGACTACCAAGCGAAAGAAGAGGAGACGGAGATAG

Coding sequence (CDS) from alignment at tig00000056_pilon:601292..603430+

>Ggra6815.t1 ID=Ggra6815.t1|Name=Ggra6815.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2139bp|location=Sequence derived from alignment at tig00000056_pilon:601292..603430+ (Gracilaria gracilis GNS1m male)
ATGGAGGATCCGGATGGCTTCGTGCGCACACTGCCTGACGCCGTCGACGG
CGACTTCTCCGACGATGACGCGTCGGAGCTCATGTTCGGCTCAGATGAGG
ATGGCGAGGCAAATGGTACAGCAGCGCCTTTTTTCGAGGCTCACAAGCCA
GCCGCCTGGGATCTGAGCGCGGCGCGGAAGGAGGCGGCGAAGCTCAGGCC
GTTTCAGACCACCATTGATGAAAAGATTCGCGGCGCGCTGGGAAGGATTA
ATCAGCAAAAGTCATCGCCTGAGCGCCATGCACCTGGCGGCCATAATCCT
GATGGCGATGAACGTGATGGCGATGAACGTGATGGCGATGAACGTGATGG
CGATGGGCGTGATGGCGATGGGCGTGATGGCGATGGGCGTGATGGCGATG
GGCGTGATGGCGATGGGCGTGATAGCGATGCGGATTTGACGCACAAACGC
GGCCGAGAGACCGAAGAGGCCGAGGTGGATGATGACGTAGCCGAGGGTGA
TGCGGAGGAAGACGAAAAGCGCGATGAGCGAGAAACTAACAAAGATAAGC
AGCTTTCCAAGCTCAAGAAGGGGCGAAAGCGACTTCGCAAGGAGAAGTCT
GCAGCGAAGTCATTTCAGCAGCTTCATCTGTCGAAGCCTTTACAGAAGGC
TGTTGACGTCTTGCAGTGGAACCAACCCACGCCCATACAGGCTAGTGCGA
TTCCGTATGTGCTTGCCGGGCGCGATATTTGCGCTAGTGCTGTTACGGGT
TCCGGTAAGACGGCTGCGTTTGTGCTGCCAGTGTTAGAGCGTCTCTTGCA
AGCTGGTATGGACAACTCAACTCGCGTTATCATTTTGTTGCCCACTCGTG
AATTGGCTGCCCAATGTCATGCCGTTGTCCAGAGTCTTGCGAAGTATACT
TCTATCCGAGCTGCCTTGGCTGTTGGTGGCTTATCGAACAAGGCTCAGGA
AGTTGCATTACGTACACACCCTCATATTATTGTCGCGACGCCTGGGAGAC
TGATTGATCATATCAGGAACGCTCATAGTTTCTCACTTGATGATATCGAG
ATTCTCATCATGGATGAGGCTGATCGTTTGTTGGAAATGGGATTTCAGGC
AGAGGTGCAGCAGATTGTCAGTGCTACACCCGAGAATCGACAAACACTTT
TGTTTTCCGCCACCATGAACACACAATTGAACGCTCTAGTCAAACTGTCA
TTGCAAAACCCGATCAACTTGAATATAGATCCCATGTTTAATGTTGCGGA
AACTCTTTCGCAAGAGTTTGTGAAACTGCGACCAGCATTCGAAAGCAGCA
AGAACGCCCTCTTATTCTCACTTGTTTCGCGAACATTCAAGACACGTACC
ATTGTTTTCTTCCGGCATAAGGTGACCGCACATCATTTCAAGATTCTTTT
TGGGTTGAGTAAGCTGAAATCCGCAGAACTCCATGGAAATTTGACTCAGG
CACAACGTCTTGCGGCGCTCGATGATTTCAGACAAGGAACCGTTGACTTC
TTGCTGTGCACTGATTTGGCGGCTCGCGGATTAGACATTGCAGGGGTGGA
AACAGTTGTCAATTATGACATGCCCGGAGAACTGAAGGAATATGTACATC
GAGTTGGCCGTACTGCTCGTGCGGGAAGCGCTGGACGAGCTTGCAGCATA
GTTTGTACAGGTAGTAACGATGAGCGCAAATTGTTGAAGAATATTGCGAA
ACGAGCTAAAGGGAAGCTAGTGGCGCGAGTGGTACCACCTTCCGTGATTG
GGAAGTGGAGCGCTTGGCTAGGCAGATTGCAACCGGCGTTGAGGGCTGTT
TTGAAGGAGGAAAGGCAAGAGAAAGAAATGAGGTTGGCGGAAATGGAGCT
GAACAAAGCGAGCAACTTGATGAAGCATTCTGATCAGATTTATGCGCGTC
CTGCACGCACTTGGTTCCAGACAGAAGGTGAGAAAAAGGATGAGAAGGCT
AAAGCAAGACGTGAGAAAGGCCTGCCAGAAAGCGTTGATGAGAAGACGAG
ACGCGTTGCGCAACAGAAGAAAGCCGCCGAAATGGAACTGCGGAAGAGAA
AAAGGGAAGTAACAGAGAGGGAGGAGTCGTACTCCAAACAACGAGCTGAG
GCTCGGACTACCAAGCGAAAGAAGAGGAGACGGAGATAG