Ggra6873.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6873.t1
Unique Name	Ggra6873.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:732602..733846 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005102946.1
Preferred name	KLHL5
PFAMs	BACK,BTB,Kelch_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10442
GOs	GO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0015630,GO:0019538,GO:0031461,GO:0031463,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1902494,GO:1990234
Evalue	2.48e-07
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota,38CPD@33154\|Opisthokonta,3BFNB@33208\|Metazoa,3CU0G@33213\|Bilateria
Description	actin binding
COG category	T
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6873	Ggra6873	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 732602..733846 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6873.t1.start1	Ggra6873.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 732602..732604 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6873.t1.CDS1	Ggra6873.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 732602..733846 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6873.t1.exon1	Ggra6873.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 732602..733846 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6873.t1.stop1	Ggra6873.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 733844..733846 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6873.t1	Ggra6873.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 732602..733846 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:732602..733846+
coding sequence from alignment at tig00000056_pilon:732602..733846+

mRNA sequence

>Ggra6873.t1 ID=Ggra6873.t1|Name=Ggra6873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=415bp
MSAFVNVSANIYTDQDDGAFLVPDYCPKGEHFRSHLVNKLLEADSAHILC
DVVLQTSEGHEVPACRALLAARSDFFLSLFFSNFEEAKQKTVKLNVTKQV
LRHLLLFAYTGHCEFVKEVLQFCELESIRKSHCGFPHHYRLPALVQLSAA
AEYHGFKLLHIWCDSALYSICDNHVRSACLVLRAMSDYCGSHPARHDIID
TVWGNIEVAFNVPKSVSSGQSDNSSNDESFDDDDECSSSDSKNTDPKKLG
ILELSPTALDTVLSGDLEQISCPNRHEYLFQSIFYWVTNGTALKRGYKVR
TKETGVDANGGNTDNQIEGNGGGTEPSVDSKGGDTDDGSQEDGGGAEPGV
FYVDCERMKWGKLFASRLNLKRMRIRFVHDYVMPTGLTGEIDFVDMLWNH
VLSTTSEIRELKVK*

spliced messenger RNA

>Ggra6873.t1 ID=Ggra6873.t1|Name=Ggra6873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000056_pilon:732602..733846+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCTTTTGTTAATGTCTCTGCTAATATATACACCGACCAGGATGA
TGGTGCTTTTCTTGTGCCCGATTATTGCCCTAAAGGTGAGCATTTTCGTT
CGCATCTCGTCAACAAGCTGCTTGAAGCTGACTCTGCACACATCCTCTGT
GATGTGGTGCTTCAAACCAGTGAAGGCCACGAAGTTCCTGCCTGTCGCGC
GCTGCTCGCCGCTAGAAGTGATTTTTTCCTATCTTTATTCTTCTCTAACT
TTGAAGAGGCCAAGCAGAAAACCGTCAAACTAAACGTCACTAAACAAGTT
CTTCGTCACCTTTTGTTATTCGCTTACACGGGACATTGTGAATTTGTGAA
GGAGGTTTTGCAATTTTGTGAGCTTGAAAGCATCCGGAAATCACACTGTG
GTTTTCCACATCACTACCGACTCCCGGCTCTAGTTCAGCTAAGCGCTGCT
GCTGAATACCATGGCTTTAAACTTCTTCATATATGGTGTGATTCCGCTTT
GTATTCAATATGTGATAATCATGTCCGCTCAGCGTGTCTTGTGTTGCGCG
CCATGAGTGATTATTGTGGAAGTCATCCAGCGAGGCATGATATTATAGAC
ACGGTTTGGGGCAACATCGAAGTCGCCTTTAATGTTCCTAAAAGTGTGTC
ATCAGGACAATCCGATAACAGCTCCAACGATGAGAGCTTCGACGATGACG
ATGAGTGTTCGTCTAGCGATTCTAAGAATACTGATCCAAAAAAGCTGGGC
ATACTTGAGTTGTCGCCCACGGCTCTCGACACGGTGCTCTCCGGCGACCT
AGAGCAAATTTCATGCCCCAATCGTCATGAGTATCTTTTCCAAAGCATTT
TTTATTGGGTTACAAATGGAACTGCTTTAAAGCGAGGCTACAAGGTACGC
ACTAAAGAAACAGGTGTGGATGCAAACGGTGGCAATACCGATAATCAAAT
CGAAGGAAACGGCGGTGGCACAGAACCAAGTGTTGATTCAAAAGGTGGCG
ATACTGATGATGGAAGCCAAGAAGACGGCGGTGGTGCAGAACCAGGTGTT
TTTTATGTGGATTGCGAGCGCATGAAATGGGGAAAGTTGTTCGCTAGCAG
ACTGAATTTGAAGCGCATGCGTATTCGCTTCGTCCATGATTATGTCATGC
CAACAGGCTTGACCGGAGAGATCGATTTCGTGGATATGCTTTGGAATCAC
GTCTTGTCGACGACGAGTGAGATCCGAGAATTAAAAGTGAAGTAA

protein sequence of Ggra6873.t1

>Ggra6873.t1 ID=Ggra6873.t1|Name=Ggra6873.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=415bp
MSAFVNVSANIYTDQDDGAFLVPDYCPKGEHFRSHLVNKLLEADSAHILC
DVVLQTSEGHEVPACRALLAARSDFFLSLFFSNFEEAKQKTVKLNVTKQV
LRHLLLFAYTGHCEFVKEVLQFCELESIRKSHCGFPHHYRLPALVQLSAA
AEYHGFKLLHIWCDSALYSICDNHVRSACLVLRAMSDYCGSHPARHDIID
TVWGNIEVAFNVPKSVSSGQSDNSSNDESFDDDDECSSSDSKNTDPKKLG
ILELSPTALDTVLSGDLEQISCPNRHEYLFQSIFYWVTNGTALKRGYKVR
TKETGVDANGGNTDNQIEGNGGGTEPSVDSKGGDTDDGSQEDGGGAEPGV
FYVDCERMKWGKLFASRLNLKRMRIRFVHDYVMPTGLTGEIDFVDMLWNH
VLSTTSEIRELKVK*

mRNA from alignment at tig00000056_pilon:732602..733846+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6873.t1 ID=Ggra6873.t1|Name=Ggra6873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000056_pilon:732602..733846+ (Gracilaria gracilis GNS1m male)
ATGTCCGCTTTTGTTAATGTCTCTGCTAATATATACACCGACCAGGATGA
TGGTGCTTTTCTTGTGCCCGATTATTGCCCTAAAGGTGAGCATTTTCGTT
CGCATCTCGTCAACAAGCTGCTTGAAGCTGACTCTGCACACATCCTCTGT
GATGTGGTGCTTCAAACCAGTGAAGGCCACGAAGTTCCTGCCTGTCGCGC
GCTGCTCGCCGCTAGAAGTGATTTTTTCCTATCTTTATTCTTCTCTAACT
TTGAAGAGGCCAAGCAGAAAACCGTCAAACTAAACGTCACTAAACAAGTT
CTTCGTCACCTTTTGTTATTCGCTTACACGGGACATTGTGAATTTGTGAA
GGAGGTTTTGCAATTTTGTGAGCTTGAAAGCATCCGGAAATCACACTGTG
GTTTTCCACATCACTACCGACTCCCGGCTCTAGTTCAGCTAAGCGCTGCT
GCTGAATACCATGGCTTTAAACTTCTTCATATATGGTGTGATTCCGCTTT
GTATTCAATATGTGATAATCATGTCCGCTCAGCGTGTCTTGTGTTGCGCG
CCATGAGTGATTATTGTGGAAGTCATCCAGCGAGGCATGATATTATAGAC
ACGGTTTGGGGCAACATCGAAGTCGCCTTTAATGTTCCTAAAAGTGTGTC
ATCAGGACAATCCGATAACAGCTCCAACGATGAGAGCTTCGACGATGACG
ATGAGTGTTCGTCTAGCGATTCTAAGAATACTGATCCAAAAAAGCTGGGC
ATACTTGAGTTGTCGCCCACGGCTCTCGACACGGTGCTCTCCGGCGACCT
AGAGCAAATTTCATGCCCCAATCGTCATGAGTATCTTTTCCAAAGCATTT
TTTATTGGGTTACAAATGGAACTGCTTTAAAGCGAGGCTACAAGGTACGC
ACTAAAGAAACAGGTGTGGATGCAAACGGTGGCAATACCGATAATCAAAT
CGAAGGAAACGGCGGTGGCACAGAACCAAGTGTTGATTCAAAAGGTGGCG
ATACTGATGATGGAAGCCAAGAAGACGGCGGTGGTGCAGAACCAGGTGTT
TTTTATGTGGATTGCGAGCGCATGAAATGGGGAAAGTTGTTCGCTAGCAG
ACTGAATTTGAAGCGCATGCGTATTCGCTTCGTCCATGATTATGTCATGC
CAACAGGCTTGACCGGAGAGATCGATTTCGTGGATATGCTTTGGAATCAC
GTCTTGTCGACGACGAGTGAGATCCGAGAATTAAAAGTGAAGTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:732602..733846+

>Ggra6873.t1 ID=Ggra6873.t1|Name=Ggra6873.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1245bp|location=Sequence derived from alignment at tig00000056_pilon:732602..733846+ (Gracilaria gracilis GNS1m male)
ATGTCCGCTTTTGTTAATGTCTCTGCTAATATATACACCGACCAGGATGA
TGGTGCTTTTCTTGTGCCCGATTATTGCCCTAAAGGTGAGCATTTTCGTT
CGCATCTCGTCAACAAGCTGCTTGAAGCTGACTCTGCACACATCCTCTGT
GATGTGGTGCTTCAAACCAGTGAAGGCCACGAAGTTCCTGCCTGTCGCGC
GCTGCTCGCCGCTAGAAGTGATTTTTTCCTATCTTTATTCTTCTCTAACT
TTGAAGAGGCCAAGCAGAAAACCGTCAAACTAAACGTCACTAAACAAGTT
CTTCGTCACCTTTTGTTATTCGCTTACACGGGACATTGTGAATTTGTGAA
GGAGGTTTTGCAATTTTGTGAGCTTGAAAGCATCCGGAAATCACACTGTG
GTTTTCCACATCACTACCGACTCCCGGCTCTAGTTCAGCTAAGCGCTGCT
GCTGAATACCATGGCTTTAAACTTCTTCATATATGGTGTGATTCCGCTTT
GTATTCAATATGTGATAATCATGTCCGCTCAGCGTGTCTTGTGTTGCGCG
CCATGAGTGATTATTGTGGAAGTCATCCAGCGAGGCATGATATTATAGAC
ACGGTTTGGGGCAACATCGAAGTCGCCTTTAATGTTCCTAAAAGTGTGTC
ATCAGGACAATCCGATAACAGCTCCAACGATGAGAGCTTCGACGATGACG
ATGAGTGTTCGTCTAGCGATTCTAAGAATACTGATCCAAAAAAGCTGGGC
ATACTTGAGTTGTCGCCCACGGCTCTCGACACGGTGCTCTCCGGCGACCT
AGAGCAAATTTCATGCCCCAATCGTCATGAGTATCTTTTCCAAAGCATTT
TTTATTGGGTTACAAATGGAACTGCTTTAAAGCGAGGCTACAAGGTACGC
ACTAAAGAAACAGGTGTGGATGCAAACGGTGGCAATACCGATAATCAAAT
CGAAGGAAACGGCGGTGGCACAGAACCAAGTGTTGATTCAAAAGGTGGCG
ATACTGATGATGGAAGCCAAGAAGACGGCGGTGGTGCAGAACCAGGTGTT
TTTTATGTGGATTGCGAGCGCATGAAATGGGGAAAGTTGTTCGCTAGCAG
ACTGAATTTGAAGCGCATGCGTATTCGCTTCGTCCATGATTATGTCATGC
CAACAGGCTTGACCGGAGAGATCGATTTCGTGGATATGCTTTGGAATCAC
GTCTTGTCGACGACGAGTGAGATCCGAGAATTAAAAGTGAAGTAA