Ggra6851.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6851.t1
Unique NameGgra6851.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:669707..670612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10040550
PFAMsMethyltransf_11
Max annot lvl35493|Streptophyta
Evalue7.64e-63
EggNOG OGs28JTZ@1|root,2QS7X@2759|Eukaryota,37PVY@33090|Viridiplantae,3G7IH@35493|Streptophyta,4JNEM@91835|fabids
DescriptionubiE/COQ5 methyltransferase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6851Ggra6851Gracilaria gracilis GNS1m malegenetig00000056_pilon 669707..670612 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6851.t1.start1Ggra6851.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 669707..669709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6851.t1.CDS1Ggra6851.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 669707..670612 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6851.t1.exon1Ggra6851.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 669707..670612 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6851.t1.stop1Ggra6851.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 670610..670612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6851.t1Ggra6851.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 669707..670612 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6851.t1 ID=Ggra6851.t1|Name=Ggra6851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=302bp
MFAHPAFSLAPHVRVLPGALSRTTNCTPNPSIHRTTACCATPFKLSRRAL
LSSISLIPLAFLHHAPAEARQRCLPQGAAAHVISAATYPEQWPYTRADFK
RFDESVDAEFYSNPRITRHIDRDAVAALRNYYETTLLPGKSDVLDLCSSI
ESYMPNSWPSRNSVVGHGMNEVELSRNPALSSFIVRDLNQQPQLPFEDSS
FDLVCCALSIDYLTHPRELMSEVARVLRKNGTVAFSFSDRVFVTKAIALW
MSGGNEDHIYTVASYFHYTPSLIDINAVDISPRKLGTCSGDPLYVVTARR
V*
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spliced messenger RNA

>Ggra6851.t1 ID=Ggra6851.t1|Name=Ggra6851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000056_pilon:669707..670612+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCCATCCGGCCTTTTCACTCGCTCCACATGTACGTGTACTCCC
CGGCGCATTGTCCAGAACAACAAATTGCACCCCAAACCCCAGCATCCACC
GCACCACCGCATGCTGTGCCACGCCCTTCAAGCTATCTCGTCGAGCCCTT
CTGTCCTCAATCTCCCTTATCCCGCTCGCTTTTCTCCACCACGCCCCAGC
AGAGGCGCGGCAGCGCTGTCTACCACAAGGAGCCGCGGCGCACGTAATCT
CCGCAGCCACATACCCGGAGCAATGGCCCTACACACGCGCTGATTTCAAG
CGCTTCGACGAATCAGTCGATGCTGAGTTCTACTCCAACCCCCGAATCAC
GCGCCATATCGACCGCGATGCAGTCGCTGCGTTGCGCAACTATTACGAAA
CCACGTTGCTTCCCGGCAAGTCCGATGTGCTAGACCTGTGCTCATCAATA
GAATCGTACATGCCAAACAGCTGGCCGTCTCGAAACTCCGTCGTAGGACA
CGGTATGAACGAAGTAGAACTCTCGCGAAACCCGGCGCTGAGCTCGTTTA
TCGTTCGCGACCTCAACCAACAGCCGCAACTACCATTCGAAGACAGCTCA
TTCGACCTCGTCTGTTGCGCCCTGAGCATTGACTACCTAACCCACCCGCG
CGAGTTGATGTCCGAAGTGGCACGAGTATTGAGAAAAAACGGTACGGTGG
CGTTCAGCTTTAGTGACCGGGTGTTCGTGACAAAGGCTATCGCACTGTGG
ATGAGCGGCGGAAATGAAGACCATATTTACACGGTAGCGTCCTACTTTCA
CTACACACCCTCTCTCATAGATATCAATGCGGTAGATATTTCGCCCAGAA
AGCTCGGCACGTGCAGTGGCGATCCCTTGTACGTTGTGACGGCCCGTCGC
GTATAA
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protein sequence of Ggra6851.t1

>Ggra6851.t1 ID=Ggra6851.t1|Name=Ggra6851.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=302bp
MFAHPAFSLAPHVRVLPGALSRTTNCTPNPSIHRTTACCATPFKLSRRAL
LSSISLIPLAFLHHAPAEARQRCLPQGAAAHVISAATYPEQWPYTRADFK
RFDESVDAEFYSNPRITRHIDRDAVAALRNYYETTLLPGKSDVLDLCSSI
ESYMPNSWPSRNSVVGHGMNEVELSRNPALSSFIVRDLNQQPQLPFEDSS
FDLVCCALSIDYLTHPRELMSEVARVLRKNGTVAFSFSDRVFVTKAIALW
MSGGNEDHIYTVASYFHYTPSLIDINAVDISPRKLGTCSGDPLYVVTARR
V*
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mRNA from alignment at tig00000056_pilon:669707..670612+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6851.t1 ID=Ggra6851.t1|Name=Ggra6851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000056_pilon:669707..670612+ (Gracilaria gracilis GNS1m male)
ATGTTCGCCCATCCGGCCTTTTCACTCGCTCCACATGTACGTGTACTCCC
CGGCGCATTGTCCAGAACAACAAATTGCACCCCAAACCCCAGCATCCACC
GCACCACCGCATGCTGTGCCACGCCCTTCAAGCTATCTCGTCGAGCCCTT
CTGTCCTCAATCTCCCTTATCCCGCTCGCTTTTCTCCACCACGCCCCAGC
AGAGGCGCGGCAGCGCTGTCTACCACAAGGAGCCGCGGCGCACGTAATCT
CCGCAGCCACATACCCGGAGCAATGGCCCTACACACGCGCTGATTTCAAG
CGCTTCGACGAATCAGTCGATGCTGAGTTCTACTCCAACCCCCGAATCAC
GCGCCATATCGACCGCGATGCAGTCGCTGCGTTGCGCAACTATTACGAAA
CCACGTTGCTTCCCGGCAAGTCCGATGTGCTAGACCTGTGCTCATCAATA
GAATCGTACATGCCAAACAGCTGGCCGTCTCGAAACTCCGTCGTAGGACA
CGGTATGAACGAAGTAGAACTCTCGCGAAACCCGGCGCTGAGCTCGTTTA
TCGTTCGCGACCTCAACCAACAGCCGCAACTACCATTCGAAGACAGCTCA
TTCGACCTCGTCTGTTGCGCCCTGAGCATTGACTACCTAACCCACCCGCG
CGAGTTGATGTCCGAAGTGGCACGAGTATTGAGAAAAAACGGTACGGTGG
CGTTCAGCTTTAGTGACCGGGTGTTCGTGACAAAGGCTATCGCACTGTGG
ATGAGCGGCGGAAATGAAGACCATATTTACACGGTAGCGTCCTACTTTCA
CTACACACCCTCTCTCATAGATATCAATGCGGTAGATATTTCGCCCAGAA
AGCTCGGCACGTGCAGTGGCGATCCCTTGTACGTTGTGACGGCCCGTCGC
GTATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:669707..670612+

>Ggra6851.t1 ID=Ggra6851.t1|Name=Ggra6851.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00000056_pilon:669707..670612+ (Gracilaria gracilis GNS1m male)
ATGTTCGCCCATCCGGCCTTTTCACTCGCTCCACATGTACGTGTACTCCC
CGGCGCATTGTCCAGAACAACAAATTGCACCCCAAACCCCAGCATCCACC
GCACCACCGCATGCTGTGCCACGCCCTTCAAGCTATCTCGTCGAGCCCTT
CTGTCCTCAATCTCCCTTATCCCGCTCGCTTTTCTCCACCACGCCCCAGC
AGAGGCGCGGCAGCGCTGTCTACCACAAGGAGCCGCGGCGCACGTAATCT
CCGCAGCCACATACCCGGAGCAATGGCCCTACACACGCGCTGATTTCAAG
CGCTTCGACGAATCAGTCGATGCTGAGTTCTACTCCAACCCCCGAATCAC
GCGCCATATCGACCGCGATGCAGTCGCTGCGTTGCGCAACTATTACGAAA
CCACGTTGCTTCCCGGCAAGTCCGATGTGCTAGACCTGTGCTCATCAATA
GAATCGTACATGCCAAACAGCTGGCCGTCTCGAAACTCCGTCGTAGGACA
CGGTATGAACGAAGTAGAACTCTCGCGAAACCCGGCGCTGAGCTCGTTTA
TCGTTCGCGACCTCAACCAACAGCCGCAACTACCATTCGAAGACAGCTCA
TTCGACCTCGTCTGTTGCGCCCTGAGCATTGACTACCTAACCCACCCGCG
CGAGTTGATGTCCGAAGTGGCACGAGTATTGAGAAAAAACGGTACGGTGG
CGTTCAGCTTTAGTGACCGGGTGTTCGTGACAAAGGCTATCGCACTGTGG
ATGAGCGGCGGAAATGAAGACCATATTTACACGGTAGCGTCCTACTTTCA
CTACACACCCTCTCTCATAGATATCAATGCGGTAGATATTTCGCCCAGAA
AGCTCGGCACGTGCAGTGGCGATCCCTTGTACGTTGTGACGGCCCGTCGC
GTATAA
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