Ggra6679.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6679.t1
Unique NameGgra6679.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:170774..171826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD09354
Preferred nameATPC
PFAMsATP-synt
Max annot lvl2759|Eukaryota
KEGG koko:K02115,ko:K08341
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04068,ko04136,ko04137,ko04138,ko04139,ko04140,ko04212,ko04371,ko04621,ko04727,ko05167,map00190,map00195,map01100,map04068,map04136,map04137,map04138,map04139,map04140,map04212,map04371,map04621,map04727,map05167
KEGG ModuleM00157
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009579,GO:0009767,GO:0009772,GO:0009941,GO:0009987,GO:0015672,GO:0015979,GO:0015985,GO:0015986,GO:0016020,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019684,GO:0019693,GO:0022603,GO:0022900,GO:0030234,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046034,GO:0046390,GO:0046483,GO:0050789,GO:0050790,GO:0050793,GO:0051179,GO:0051234,GO:0051239,GO:0055035,GO:0055085,GO:0055086,GO:0055114,GO:0065007,GO:0065009,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098772,GO:0098796,GO:0098807,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1905421,GO:2000026,GO:2000067,GO:2000280
Evalue3.37e-120
EggNOG OGsCOG0224@1|root,KOG1531@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BiGG ReactioniRC1080.CRv4_Au5_s6_g12596_t1
BRITEko00000,ko00001,ko00002,ko00194,ko03029,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6679Ggra6679Gracilaria gracilis GNS1m malegenetig00000056_pilon 170774..171826 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6679.t1.stop1Ggra6679.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 170774..170776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6679.t1.CDS1Ggra6679.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 170774..171826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6679.t1.exon1Ggra6679.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 170774..171826 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6679.t1.start1Ggra6679.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 171824..171826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6679.t1Ggra6679.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 170774..171826 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6679.t1 ID=Ggra6679.t1|Name=Ggra6679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MNAPGFVSSFTGASLAPPRARTAAAVSPRVAPLRMGAGQLREIRDRITSV
KNTQKITDAMRLVAAAKVRRAQDAVLRTRPFSETLQQVLGNLIDRLNSDY
TDLPLLAQRDAKKVVLVLISGDRGLCGGYNSYVIKKAQARVQELQKSGID
VELVTIGNKGQTFFKSRGPTIRRHFQCTQAPTADQATAISDELLAEYLSG
DVDRVELVYTRFVSLIASEASVRTMLPLSPQGIESDEDEIFQLTTKDGKL
GVKVETIQNADAPAFPADMIFEQDPLQILNAILPLYLNGQILRTLQESVA
SELAARMSAMSNASDNAKELGKDLSLTYNRGRQAAITQEISEIVAGSMAS
*
back to top

spliced messenger RNA

>Ggra6679.t1 ID=Ggra6679.t1|Name=Ggra6679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000056_pilon:170774..171826- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCGCCCGGCTTCGTCTCCTCCTTCACGGGCGCCTCGCTGGCGCC
GCCGCGCGCGCGCACGGCCGCCGCCGTCAGCCCGCGCGTCGCGCCGCTGC
GCATGGGCGCCGGCCAGCTACGCGAGATCCGCGACCGCATCACCTCCGTG
AAAAACACGCAGAAGATCACCGACGCCATGCGTCTGGTCGCTGCCGCCAA
GGTGCGCCGCGCGCAGGACGCCGTGCTGCGCACGCGCCCCTTCTCCGAGA
CGCTGCAGCAGGTGCTGGGTAACCTCATCGACCGCCTCAACTCCGACTAC
ACCGACCTGCCCTTGCTGGCACAGCGCGACGCCAAGAAGGTCGTGCTCGT
CCTTATCAGCGGCGATCGCGGCTTGTGCGGCGGCTACAACTCCTATGTCA
TCAAAAAGGCGCAGGCGCGCGTGCAGGAGCTGCAAAAGTCGGGCATTGAC
GTCGAGCTGGTCACCATTGGAAACAAGGGCCAGACGTTCTTCAAGTCCCG
TGGGCCCACCATTCGTCGCCACTTCCAGTGCACGCAGGCGCCCACTGCGG
ACCAGGCCACCGCCATTTCGGACGAGCTGCTGGCAGAATACCTGTCCGGA
GATGTCGATCGCGTCGAGTTGGTGTACACTCGCTTCGTGTCTCTCATTGC
GTCCGAGGCTTCTGTGCGTACCATGCTGCCGCTCTCGCCGCAGGGCATTG
AGTCCGATGAAGACGAAATCTTCCAGCTCACTACTAAGGACGGCAAGTTG
GGCGTCAAGGTGGAGACCATCCAGAATGCCGACGCGCCCGCTTTCCCAGC
AGACATGATTTTCGAGCAAGATCCGCTACAGATTCTCAACGCCATCCTGC
CCTTGTATCTCAATGGCCAGATTCTGCGTACTCTGCAAGAATCGGTCGCT
TCTGAACTGGCCGCGCGTATGTCCGCCATGTCCAATGCGTCAGATAATGC
AAAGGAACTCGGCAAGGATCTCAGCCTCACCTACAACAGAGGAAGGCAAG
CTGCCATTACTCAGGAGATTTCTGAGATTGTTGCTGGTTCCATGGCTTCT
TAA
back to top

protein sequence of Ggra6679.t1

>Ggra6679.t1 ID=Ggra6679.t1|Name=Ggra6679.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MNAPGFVSSFTGASLAPPRARTAAAVSPRVAPLRMGAGQLREIRDRITSV
KNTQKITDAMRLVAAAKVRRAQDAVLRTRPFSETLQQVLGNLIDRLNSDY
TDLPLLAQRDAKKVVLVLISGDRGLCGGYNSYVIKKAQARVQELQKSGID
VELVTIGNKGQTFFKSRGPTIRRHFQCTQAPTADQATAISDELLAEYLSG
DVDRVELVYTRFVSLIASEASVRTMLPLSPQGIESDEDEIFQLTTKDGKL
GVKVETIQNADAPAFPADMIFEQDPLQILNAILPLYLNGQILRTLQESVA
SELAARMSAMSNASDNAKELGKDLSLTYNRGRQAAITQEISEIVAGSMAS
*
back to top

mRNA from alignment at tig00000056_pilon:170774..171826-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6679.t1 ID=Ggra6679.t1|Name=Ggra6679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000056_pilon:170774..171826- (Gracilaria gracilis GNS1m male)
ATGAACGCGCCCGGCTTCGTCTCCTCCTTCACGGGCGCCTCGCTGGCGCC
GCCGCGCGCGCGCACGGCCGCCGCCGTCAGCCCGCGCGTCGCGCCGCTGC
GCATGGGCGCCGGCCAGCTACGCGAGATCCGCGACCGCATCACCTCCGTG
AAAAACACGCAGAAGATCACCGACGCCATGCGTCTGGTCGCTGCCGCCAA
GGTGCGCCGCGCGCAGGACGCCGTGCTGCGCACGCGCCCCTTCTCCGAGA
CGCTGCAGCAGGTGCTGGGTAACCTCATCGACCGCCTCAACTCCGACTAC
ACCGACCTGCCCTTGCTGGCACAGCGCGACGCCAAGAAGGTCGTGCTCGT
CCTTATCAGCGGCGATCGCGGCTTGTGCGGCGGCTACAACTCCTATGTCA
TCAAAAAGGCGCAGGCGCGCGTGCAGGAGCTGCAAAAGTCGGGCATTGAC
GTCGAGCTGGTCACCATTGGAAACAAGGGCCAGACGTTCTTCAAGTCCCG
TGGGCCCACCATTCGTCGCCACTTCCAGTGCACGCAGGCGCCCACTGCGG
ACCAGGCCACCGCCATTTCGGACGAGCTGCTGGCAGAATACCTGTCCGGA
GATGTCGATCGCGTCGAGTTGGTGTACACTCGCTTCGTGTCTCTCATTGC
GTCCGAGGCTTCTGTGCGTACCATGCTGCCGCTCTCGCCGCAGGGCATTG
AGTCCGATGAAGACGAAATCTTCCAGCTCACTACTAAGGACGGCAAGTTG
GGCGTCAAGGTGGAGACCATCCAGAATGCCGACGCGCCCGCTTTCCCAGC
AGACATGATTTTCGAGCAAGATCCGCTACAGATTCTCAACGCCATCCTGC
CCTTGTATCTCAATGGCCAGATTCTGCGTACTCTGCAAGAATCGGTCGCT
TCTGAACTGGCCGCGCGTATGTCCGCCATGTCCAATGCGTCAGATAATGC
AAAGGAACTCGGCAAGGATCTCAGCCTCACCTACAACAGAGGAAGGCAAG
CTGCCATTACTCAGGAGATTTCTGAGATTGTTGCTGGTTCCATGGCTTCT
TAA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:170774..171826-

>Ggra6679.t1 ID=Ggra6679.t1|Name=Ggra6679.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000056_pilon:170774..171826- (Gracilaria gracilis GNS1m male)
ATGAACGCGCCCGGCTTCGTCTCCTCCTTCACGGGCGCCTCGCTGGCGCC
GCCGCGCGCGCGCACGGCCGCCGCCGTCAGCCCGCGCGTCGCGCCGCTGC
GCATGGGCGCCGGCCAGCTACGCGAGATCCGCGACCGCATCACCTCCGTG
AAAAACACGCAGAAGATCACCGACGCCATGCGTCTGGTCGCTGCCGCCAA
GGTGCGCCGCGCGCAGGACGCCGTGCTGCGCACGCGCCCCTTCTCCGAGA
CGCTGCAGCAGGTGCTGGGTAACCTCATCGACCGCCTCAACTCCGACTAC
ACCGACCTGCCCTTGCTGGCACAGCGCGACGCCAAGAAGGTCGTGCTCGT
CCTTATCAGCGGCGATCGCGGCTTGTGCGGCGGCTACAACTCCTATGTCA
TCAAAAAGGCGCAGGCGCGCGTGCAGGAGCTGCAAAAGTCGGGCATTGAC
GTCGAGCTGGTCACCATTGGAAACAAGGGCCAGACGTTCTTCAAGTCCCG
TGGGCCCACCATTCGTCGCCACTTCCAGTGCACGCAGGCGCCCACTGCGG
ACCAGGCCACCGCCATTTCGGACGAGCTGCTGGCAGAATACCTGTCCGGA
GATGTCGATCGCGTCGAGTTGGTGTACACTCGCTTCGTGTCTCTCATTGC
GTCCGAGGCTTCTGTGCGTACCATGCTGCCGCTCTCGCCGCAGGGCATTG
AGTCCGATGAAGACGAAATCTTCCAGCTCACTACTAAGGACGGCAAGTTG
GGCGTCAAGGTGGAGACCATCCAGAATGCCGACGCGCCCGCTTTCCCAGC
AGACATGATTTTCGAGCAAGATCCGCTACAGATTCTCAACGCCATCCTGC
CCTTGTATCTCAATGGCCAGATTCTGCGTACTCTGCAAGAATCGGTCGCT
TCTGAACTGGCCGCGCGTATGTCCGCCATGTCCAATGCGTCAGATAATGC
AAAGGAACTCGGCAAGGATCTCAGCCTCACCTACAACAGAGGAAGGCAAG
CTGCCATTACTCAGGAGATTTCTGAGATTGTTGCTGGTTCCATGGCTTCT
TAA
back to top