Ggra6762.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6762.t1
Unique NameGgra6762.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:450933..451820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6762Ggra6762Gracilaria gracilis GNS1m malegenetig00000056_pilon 450933..451820 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6762.t1.start1Ggra6762.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 450933..450935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6762.t1.CDS1Ggra6762.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 450933..451820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6762.t1.exon1Ggra6762.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 450933..451820 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6762.t1.stop1Ggra6762.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 451818..451820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6762.t1Ggra6762.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 450933..451820 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6762.t1 ID=Ggra6762.t1|Name=Ggra6762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MADAPRDSAVFGALDSLEPDDAMDPMLLNLPAPEPADWALDPLSSDLYPL
TYMEPSLPTNAPPASPPAAAPPPDPPAPSQPPPSPSQLPPASSPSRARKR
PPPPSPSPSSTSGKRVPTAVCSNCGRAVANNGANFRRHETACRRSRAPVV
PTPRDQELIRVVQRLHTSISSLDVSARVCLRDALFSLSNKAANPTATPTP
QQEAMNRAAEYLVLRMLFLSGAQLLMHTAPGTAPPYPSSSPHADDTHQQA
ERNEGDTQAVAADAVQSSAQQQQLVAPQQQAAPHTVKDDKAAGAP*
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spliced messenger RNA

>Ggra6762.t1 ID=Ggra6762.t1|Name=Ggra6762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000056_pilon:450933..451820+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGCGCCGCGCGACTCCGCCGTCTTTGGTGCGCTCGACTCGCT
CGAACCCGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGCGCCCG
AGCCTGCCGATTGGGCGCTCGACCCGCTCTCGTCCGACTTGTACCCCTTG
ACGTACATGGAGCCGTCGCTTCCTACCAATGCACCACCTGCGTCGCCGCC
CGCCGCTGCACCTCCCCCAGACCCTCCCGCCCCCTCGCAACCCCCTCCAT
CGCCCTCACAACTGCCGCCCGCGTCGTCGCCGTCGCGCGCGCGAAAACGG
CCACCTCCCCCCTCGCCGTCGCCTTCATCTACGTCCGGTAAGCGCGTGCC
CACCGCCGTGTGCTCCAATTGCGGCAGAGCCGTCGCCAATAATGGCGCAA
ACTTCAGGCGTCACGAAACCGCATGTAGACGCTCCAGAGCGCCTGTCGTG
CCCACGCCGCGAGACCAGGAGCTTATTCGCGTTGTTCAACGGCTGCATAC
TAGTATTTCGTCGTTGGACGTTTCCGCTCGCGTTTGCTTGCGCGACGCAT
TATTCTCGTTGAGTAACAAGGCCGCAAACCCTACCGCAACCCCTACCCCG
CAACAAGAAGCCATGAACAGAGCCGCCGAGTACCTGGTACTGCGCATGCT
GTTTCTGTCTGGCGCTCAGCTGCTCATGCATACCGCACCCGGTACCGCAC
CACCGTATCCGTCATCGTCGCCACACGCCGATGATACCCACCAACAAGCG
GAGCGAAACGAGGGCGATACGCAAGCTGTTGCAGCTGACGCCGTGCAATC
AAGCGCGCAACAACAACAGCTTGTGGCGCCGCAACAACAGGCCGCACCGC
ATACGGTAAAGGATGATAAAGCAGCAGGCGCTCCATAG
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protein sequence of Ggra6762.t1

>Ggra6762.t1 ID=Ggra6762.t1|Name=Ggra6762.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MADAPRDSAVFGALDSLEPDDAMDPMLLNLPAPEPADWALDPLSSDLYPL
TYMEPSLPTNAPPASPPAAAPPPDPPAPSQPPPSPSQLPPASSPSRARKR
PPPPSPSPSSTSGKRVPTAVCSNCGRAVANNGANFRRHETACRRSRAPVV
PTPRDQELIRVVQRLHTSISSLDVSARVCLRDALFSLSNKAANPTATPTP
QQEAMNRAAEYLVLRMLFLSGAQLLMHTAPGTAPPYPSSSPHADDTHQQA
ERNEGDTQAVAADAVQSSAQQQQLVAPQQQAAPHTVKDDKAAGAP*
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mRNA from alignment at tig00000056_pilon:450933..451820+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6762.t1 ID=Ggra6762.t1|Name=Ggra6762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000056_pilon:450933..451820+ (Gracilaria gracilis GNS1m male)
ATGGCCGACGCGCCGCGCGACTCCGCCGTCTTTGGTGCGCTCGACTCGCT
CGAACCCGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGCGCCCG
AGCCTGCCGATTGGGCGCTCGACCCGCTCTCGTCCGACTTGTACCCCTTG
ACGTACATGGAGCCGTCGCTTCCTACCAATGCACCACCTGCGTCGCCGCC
CGCCGCTGCACCTCCCCCAGACCCTCCCGCCCCCTCGCAACCCCCTCCAT
CGCCCTCACAACTGCCGCCCGCGTCGTCGCCGTCGCGCGCGCGAAAACGG
CCACCTCCCCCCTCGCCGTCGCCTTCATCTACGTCCGGTAAGCGCGTGCC
CACCGCCGTGTGCTCCAATTGCGGCAGAGCCGTCGCCAATAATGGCGCAA
ACTTCAGGCGTCACGAAACCGCATGTAGACGCTCCAGAGCGCCTGTCGTG
CCCACGCCGCGAGACCAGGAGCTTATTCGCGTTGTTCAACGGCTGCATAC
TAGTATTTCGTCGTTGGACGTTTCCGCTCGCGTTTGCTTGCGCGACGCAT
TATTCTCGTTGAGTAACAAGGCCGCAAACCCTACCGCAACCCCTACCCCG
CAACAAGAAGCCATGAACAGAGCCGCCGAGTACCTGGTACTGCGCATGCT
GTTTCTGTCTGGCGCTCAGCTGCTCATGCATACCGCACCCGGTACCGCAC
CACCGTATCCGTCATCGTCGCCACACGCCGATGATACCCACCAACAAGCG
GAGCGAAACGAGGGCGATACGCAAGCTGTTGCAGCTGACGCCGTGCAATC
AAGCGCGCAACAACAACAGCTTGTGGCGCCGCAACAACAGGCCGCACCGC
ATACGGTAAAGGATGATAAAGCAGCAGGCGCTCCATAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:450933..451820+

>Ggra6762.t1 ID=Ggra6762.t1|Name=Ggra6762.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000056_pilon:450933..451820+ (Gracilaria gracilis GNS1m male)
ATGGCCGACGCGCCGCGCGACTCCGCCGTCTTTGGTGCGCTCGACTCGCT
CGAACCCGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGCGCCCG
AGCCTGCCGATTGGGCGCTCGACCCGCTCTCGTCCGACTTGTACCCCTTG
ACGTACATGGAGCCGTCGCTTCCTACCAATGCACCACCTGCGTCGCCGCC
CGCCGCTGCACCTCCCCCAGACCCTCCCGCCCCCTCGCAACCCCCTCCAT
CGCCCTCACAACTGCCGCCCGCGTCGTCGCCGTCGCGCGCGCGAAAACGG
CCACCTCCCCCCTCGCCGTCGCCTTCATCTACGTCCGGTAAGCGCGTGCC
CACCGCCGTGTGCTCCAATTGCGGCAGAGCCGTCGCCAATAATGGCGCAA
ACTTCAGGCGTCACGAAACCGCATGTAGACGCTCCAGAGCGCCTGTCGTG
CCCACGCCGCGAGACCAGGAGCTTATTCGCGTTGTTCAACGGCTGCATAC
TAGTATTTCGTCGTTGGACGTTTCCGCTCGCGTTTGCTTGCGCGACGCAT
TATTCTCGTTGAGTAACAAGGCCGCAAACCCTACCGCAACCCCTACCCCG
CAACAAGAAGCCATGAACAGAGCCGCCGAGTACCTGGTACTGCGCATGCT
GTTTCTGTCTGGCGCTCAGCTGCTCATGCATACCGCACCCGGTACCGCAC
CACCGTATCCGTCATCGTCGCCACACGCCGATGATACCCACCAACAAGCG
GAGCGAAACGAGGGCGATACGCAAGCTGTTGCAGCTGACGCCGTGCAATC
AAGCGCGCAACAACAACAGCTTGTGGCGCCGCAACAACAGGCCGCACCGC
ATACGGTAAAGGATGATAAAGCAGCAGGCGCTCCATAG
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