Ggra6683.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6683.t1
Unique Name	Ggra6683.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	587

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:186409..189628 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6683	Ggra6683	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 186409..189628 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6683.t1	Ggra6683.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 186409..189628 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6683.t1.start1	Ggra6683.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 186409..186411 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6683.t1.CDS1	Ggra6683.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 186409..187815 +
Ggra6683.t1.CDS2	Ggra6683.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 189275..189628 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6683.t1.exon1	Ggra6683.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 186409..187815 +
Ggra6683.t1.exon2	Ggra6683.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 189275..189628 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6683.t1.intron1	Ggra6683.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000056_pilon 187816..189274 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6683.t1.stop1	Ggra6683.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 189626..189628 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:186409..189628+
coding sequence from alignment at tig00000056_pilon:186409..189628+

mRNA sequence

>Ggra6683.t1 ID=Ggra6683.t1|Name=Ggra6683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MRSKTHTKEKCSKVLLVLHPTAVVRPNFVISQVKWWFLVTVFITSITLVP
GFLLARGVEDWNEIVDSVVITFGVRTLALLSKLIIDKLFDFINGGKKDYI
VRGGNFFTKDNPLIQFLWERKILHKALEQGKKIGDNTHRMASHPKVWLLL
IVLSYIVRLAPDMLGASLVAQNEPYRIVERIESITAPDLGFGDASGLQLR
GNCVWARGGPDGKAVVAPSERRKADKRFGFIIWQYCVDVFREQEVDSEFR
TLRGVDRNGKEVKAVFHIEVITEEVFTESWEPFSNETRAQAVFDSVISSA
IECPNDTCMKNYRTEDMRIIYALLTKVGMHERSLRGDNDSLEKLRTSTGR
VIARLPSTTRTSFVVLIVAVNVIFLAQSVSNSEEEVEHIALQRAISELKR
PHGGSELTAIALPRGDASRSWGSKDGVQCYVVGDASCSAAQLLERVGDAV
AVADEGGGAAGETRHGRRWVSNGLLLELATVAAAAAGGSDCADGRRQYCS
WNSGDSGSEYVAQVRNKMDARHSVSAANTDATTTPMDEMVLANALNMSAM
ISANTANENAYRNAESPRDAHCRHSRHSRDSAGDDT*

spliced messenger RNA

>Ggra6683.t1 ID=Ggra6683.t1|Name=Ggra6683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000056_pilon:186409..189628+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGAGCAAAACACACACAAAAGAAAAGTGCAGCAAAGTGTTGTTGGT
GCTTCATCCAACGGCTGTGGTTCGACCCAACTTTGTGATAAGTCAGGTCA
AGTGGTGGTTCCTGGTGACTGTGTTCATCACAAGTATCACTCTTGTGCCC
GGTTTCTTGTTAGCAAGGGGAGTGGAGGACTGGAACGAAATCGTGGACAG
TGTTGTGATCACATTCGGCGTGAGGACGTTAGCACTGTTATCAAAGCTGA
TTATCGACAAGCTGTTCGACTTCATCAACGGCGGAAAGAAGGACTACATA
GTTCGCGGCGGCAATTTCTTCACCAAGGACAACCCGCTGATACAGTTTCT
GTGGGAACGAAAGATTCTACACAAGGCGCTGGAACAAGGCAAAAAGATCG
GCGACAACACACACCGAATGGCGTCTCATCCAAAAGTATGGCTGCTGCTA
ATTGTGCTGTCATACATTGTGAGGCTGGCGCCAGACATGCTGGGAGCGTC
TCTGGTAGCACAGAATGAGCCGTATAGAATCGTAGAGCGAATTGAGAGCA
TCACGGCGCCAGACCTCGGGTTCGGGGACGCAAGCGGATTACAGCTTCGC
GGAAACTGTGTGTGGGCGAGAGGGGGGCCGGACGGAAAGGCGGTGGTGGC
ACCGAGTGAACGAAGAAAGGCGGACAAACGATTCGGCTTCATCATCTGGC
AGTACTGCGTGGACGTGTTCCGCGAGCAGGAGGTGGACAGCGAGTTCCGC
ACGCTGCGGGGAGTGGACCGAAACGGGAAGGAGGTGAAAGCAGTGTTCCA
CATCGAAGTGATCACGGAGGAGGTGTTCACCGAATCCTGGGAACCGTTTT
CAAACGAGACGCGCGCACAGGCGGTGTTCGACTCGGTGATCTCCAGCGCG
ATCGAGTGCCCCAACGACACGTGCATGAAGAACTACCGCACGGAGGACAT
GCGCATCATCTACGCGCTGCTAACGAAGGTAGGTATGCACGAGCGCTCGC
TGCGCGGCGACAACGACAGCCTGGAGAAGCTGCGCACGAGCACGGGGCGG
GTGATCGCGCGGCTGCCGTCGACGACGCGCACGTCGTTCGTGGTGCTGAT
CGTGGCGGTGAACGTGATCTTCCTGGCGCAGTCGGTGAGCAACAGCGAGG
AGGAGGTGGAGCACATTGCACTACAGCGTGCGATCAGCGAGCTGAAGCGG
CCGCACGGCGGCAGCGAGCTGACGGCGATCGCGCTGCCGCGCGGCGACGC
GAGCCGGAGCTGGGGGAGCAAGGACGGCGTGCAGTGCTACGTGGTGGGCG
ACGCGTCGTGCTCGGCGGCGCAGTTGCTGGAGCGCGTGGGCGACGCGGTG
GCGGTGGCGGACGAGGGCGGCGGGGCGGCGGGCGAGACGCGCCACGGGCG
GCGCTGGGTCAGCAATGGCTTGCTGCTCGAGTTGgccaccgtcgccgccg
ccgccgccgGAGGCAGCGACTGCGCCGACGGTCGACGCCAGTACTGCTCG
TGGAACAGCGGCGACAGCGGCTCCGAGTACGTCGCGCAAGTGCGAAACAA
AATGGACGCCAGACACAGCGTGAGCGCCGCCAATACGGACGCCACCACCA
CGCCCATGGACGAGATGGTGCTCGCAAACGCGTTGAACATGTCGGCCATG
ATCTCCGCGAACACGGCCAATGAGAACGCGTACCGGAACGCGGAATCACC
GCGCGATGCACACTGTCGCCACTCGAGACACAGCCGCGACAGCGCTGGCG
ACGACACCTGA

protein sequence of Ggra6683.t1

>Ggra6683.t1 ID=Ggra6683.t1|Name=Ggra6683.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MRSKTHTKEKCSKVLLVLHPTAVVRPNFVISQVKWWFLVTVFITSITLVP
GFLLARGVEDWNEIVDSVVITFGVRTLALLSKLIIDKLFDFINGGKKDYI
VRGGNFFTKDNPLIQFLWERKILHKALEQGKKIGDNTHRMASHPKVWLLL
IVLSYIVRLAPDMLGASLVAQNEPYRIVERIESITAPDLGFGDASGLQLR
GNCVWARGGPDGKAVVAPSERRKADKRFGFIIWQYCVDVFREQEVDSEFR
TLRGVDRNGKEVKAVFHIEVITEEVFTESWEPFSNETRAQAVFDSVISSA
IECPNDTCMKNYRTEDMRIIYALLTKVGMHERSLRGDNDSLEKLRTSTGR
VIARLPSTTRTSFVVLIVAVNVIFLAQSVSNSEEEVEHIALQRAISELKR
PHGGSELTAIALPRGDASRSWGSKDGVQCYVVGDASCSAAQLLERVGDAV
AVADEGGGAAGETRHGRRWVSNGLLLELATVAAAAAGGSDCADGRRQYCS
WNSGDSGSEYVAQVRNKMDARHSVSAANTDATTTPMDEMVLANALNMSAM
ISANTANENAYRNAESPRDAHCRHSRHSRDSAGDDT*

mRNA from alignment at tig00000056_pilon:186409..189628+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6683.t1 ID=Ggra6683.t1|Name=Ggra6683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3220bp|location=Sequence derived from alignment at tig00000056_pilon:186409..189628+ (Gracilaria gracilis GNS1m male)
ATGCGGAGCAAAACACACACAAAAGAAAAGTGCAGCAAAGTGTTGTTGGT
GCTTCATCCAACGGCTGTGGTTCGACCCAACTTTGTGATAAGTCAGGTCA
AGTGGTGGTTCCTGGTGACTGTGTTCATCACAAGTATCACTCTTGTGCCC
GGTTTCTTGTTAGCAAGGGGAGTGGAGGACTGGAACGAAATCGTGGACAG
TGTTGTGATCACATTCGGCGTGAGGACGTTAGCACTGTTATCAAAGCTGA
TTATCGACAAGCTGTTCGACTTCATCAACGGCGGAAAGAAGGACTACATA
GTTCGCGGCGGCAATTTCTTCACCAAGGACAACCCGCTGATACAGTTTCT
GTGGGAACGAAAGATTCTACACAAGGCGCTGGAACAAGGCAAAAAGATCG
GCGACAACACACACCGAATGGCGTCTCATCCAAAAGTATGGCTGCTGCTA
ATTGTGCTGTCATACATTGTGAGGCTGGCGCCAGACATGCTGGGAGCGTC
TCTGGTAGCACAGAATGAGCCGTATAGAATCGTAGAGCGAATTGAGAGCA
TCACGGCGCCAGACCTCGGGTTCGGGGACGCAAGCGGATTACAGCTTCGC
GGAAACTGTGTGTGGGCGAGAGGGGGGCCGGACGGAAAGGCGGTGGTGGC
ACCGAGTGAACGAAGAAAGGCGGACAAACGATTCGGCTTCATCATCTGGC
AGTACTGCGTGGACGTGTTCCGCGAGCAGGAGGTGGACAGCGAGTTCCGC
ACGCTGCGGGGAGTGGACCGAAACGGGAAGGAGGTGAAAGCAGTGTTCCA
CATCGAAGTGATCACGGAGGAGGTGTTCACCGAATCCTGGGAACCGTTTT
CAAACGAGACGCGCGCACAGGCGGTGTTCGACTCGGTGATCTCCAGCGCG
ATCGAGTGCCCCAACGACACGTGCATGAAGAACTACCGCACGGAGGACAT
GCGCATCATCTACGCGCTGCTAACGAAGGTAGGTATGCACGAGCGCTCGC
TGCGCGGCGACAACGACAGCCTGGAGAAGCTGCGCACGAGCACGGGGCGG
GTGATCGCGCGGCTGCCGTCGACGACGCGCACGTCGTTCGTGGTGCTGAT
CGTGGCGGTGAACGTGATCTTCCTGGCGCAGTCGGTGAGCAACAGCGAGG
AGGAGGTGGAGCACATTGCACTACAGCGTGCGATCAGCGAGCTGAAGCGG
CCGCACGGCGGCAGCGAGCTGACGGCGATCGCGCTGCCGCGCGGCGACGC
GAGCCGGAGCTGGGGGAGCAAGGACGGCGTGCAGTGCTACGTGGTGGGCG
ACGCGTCGTGCTCGGCGGCGCAGTTGCTGGAGCGCGTGGGCGACGCGGTG
GCGGTGGCGGACGAGGGCGGCGGGGCGGCGGGCGAGACGCGCCACGGGCG
GCGCTGGGTGCGCGCGACGGTGCGGCGCGACGTGCTGCAGTGGCGCGGGG
CGGGGGACGACGGTGGCGGACTCGCTGCGTAACTTGAGAAGGTGAGTGTG
CGGTGTACAAAACCCAAGAAGGAAACCCGTTCAACTTTACGTACAAAAAG
CGCGGCAAGGGCGAAGGTAAAACCTGAAAAAAGCAAAGCAAAGCAAAGCA
CAAAAATATGAGGCGCTCAATCAGCGACGCGCGTCCTTGGCGTGCGTCAT
GAGGTGCACCCTCATGTTGCTCTTGGTGCCGAACTTGGCATCGCACACGC
CGCACGCCCACGGCCGGATGCCCAGGTGCATGAGCTGCATGTGTCTCTTG
AGGTTGCCCTTCCACTTGAAGCAGTCGCCACACGTCTGGCACACAAAGCT
CTTGTGCAGGCGCTGCTTCACCACGCGCTTCCTCACCTGATGCACGTTCT
GCTGATGAATCCTCAGCGACGTCATGCTGCAAAAGCGCGCCGAGCACGTC
TTGCAACAGATGGACTGCTCGCCCGAGTGGCACACCGCCACATGCCGCTT
GAGGTTCTGTTCGTTCCTCACCGCAATGTGGCACTGTTGGCACACCACCA
CGCCCGAGTCCGCCTTGCGATGCGCGCGCGCCGCGTGTCTTCGCAGCGAG
TTGGCGTCACCAAACAGCAGTCCACACTGCGTGCAGCACACGCGTTGCAG
CCCCTGCACgcgctgcgcgcccgcgccgtgcgccgtcgcgggcgccagcg
cGCTTTCACGTAGCTCGCGCAGCTCGCGCGTACTCGATACGCACGGCGCG
CACGCCGCCGTGGGCGCCGCCGCGCACGCAGTGGCGCTGAATACGTCATA
GTgcggcggcgacggcgccgtgtgccacaaggccgctgcgcgtggcggcg
gcggcggcggcggcggcAGACGCACGCCCTGCACCGCCTGCACGCATTGC
AGCGGCGCGTGCGCGGCCGACCAGCCGCTGTACGCGCCGGGCGCGGACGG
TTGCGACAGCAGTGTGTTGTCCATCTCCACTCACAagcgacagcgacagc
gacagcgacagcgacagcgGCgagggaatgggcggaggggggtaggggca
ggggaggggaggggaaacaaagggcagcgaagggctgacaagcgcaaggc
gcggagaaagtgggaggggaggggaggggagggggagggagggggTCGTT
GATATATGAAGGGCAGCGCTTCAATGAAGGTACACACCACGTGAGGTGAG
CAGCGGTAAGCTCTGAGACGTCGGCTGCTGCAGCGTGTGCGGAAAGCGCG
CGCGCCGCAAGCGATTGGTGGCGTTGAGCTGTGGTCCAAAATCGGCGCGC
TGTGCGAAGGCCCGCGGCACGCACAGATATCGCTTCGAGCGCGCATACAG
CTCGCAGCTGGCGCCGTATAATCACACAATCACttgttgttgttgttgtt
gttgCCCGCGCCCCAGGTCAGCAATGGCTTGCTGCTCGAGTTGgccaccg
tcgccgccgccgccgccgGAGGCAGCGACTGCGCCGACGGTCGACGCCAG
TACTGCTCGTGGAACAGCGGCGACAGCGGCTCCGAGTACGTCGCGCAAGT
GCGAAACAAAATGGACGCCAGACACAGCGTGAGCGCCGCCAATACGGACG
CCACCACCACGCCCATGGACGAGATGGTGCTCGCAAACGCGTTGAACATG
TCGGCCATGATCTCCGCGAACACGGCCAATGAGAACGCGTACCGGAACGC
GGAATCACCGCGCGATGCACACTGTCGCCACTCGAGACACAGCCGCGACA
GCGCTGGCGACGACACCTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:186409..189628+

>Ggra6683.t1 ID=Ggra6683.t1|Name=Ggra6683.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000056_pilon:186409..189628+ (Gracilaria gracilis GNS1m male)
ATGCGGAGCAAAACACACACAAAAGAAAAGTGCAGCAAAGTGTTGTTGGT
GCTTCATCCAACGGCTGTGGTTCGACCCAACTTTGTGATAAGTCAGGTCA
AGTGGTGGTTCCTGGTGACTGTGTTCATCACAAGTATCACTCTTGTGCCC
GGTTTCTTGTTAGCAAGGGGAGTGGAGGACTGGAACGAAATCGTGGACAG
TGTTGTGATCACATTCGGCGTGAGGACGTTAGCACTGTTATCAAAGCTGA
TTATCGACAAGCTGTTCGACTTCATCAACGGCGGAAAGAAGGACTACATA
GTTCGCGGCGGCAATTTCTTCACCAAGGACAACCCGCTGATACAGTTTCT
GTGGGAACGAAAGATTCTACACAAGGCGCTGGAACAAGGCAAAAAGATCG
GCGACAACACACACCGAATGGCGTCTCATCCAAAAGTATGGCTGCTGCTA
ATTGTGCTGTCATACATTGTGAGGCTGGCGCCAGACATGCTGGGAGCGTC
TCTGGTAGCACAGAATGAGCCGTATAGAATCGTAGAGCGAATTGAGAGCA
TCACGGCGCCAGACCTCGGGTTCGGGGACGCAAGCGGATTACAGCTTCGC
GGAAACTGTGTGTGGGCGAGAGGGGGGCCGGACGGAAAGGCGGTGGTGGC
ACCGAGTGAACGAAGAAAGGCGGACAAACGATTCGGCTTCATCATCTGGC
AGTACTGCGTGGACGTGTTCCGCGAGCAGGAGGTGGACAGCGAGTTCCGC
ACGCTGCGGGGAGTGGACCGAAACGGGAAGGAGGTGAAAGCAGTGTTCCA
CATCGAAGTGATCACGGAGGAGGTGTTCACCGAATCCTGGGAACCGTTTT
CAAACGAGACGCGCGCACAGGCGGTGTTCGACTCGGTGATCTCCAGCGCG
ATCGAGTGCCCCAACGACACGTGCATGAAGAACTACCGCACGGAGGACAT
GCGCATCATCTACGCGCTGCTAACGAAGGTAGGTATGCACGAGCGCTCGC
TGCGCGGCGACAACGACAGCCTGGAGAAGCTGCGCACGAGCACGGGGCGG
GTGATCGCGCGGCTGCCGTCGACGACGCGCACGTCGTTCGTGGTGCTGAT
CGTGGCGGTGAACGTGATCTTCCTGGCGCAGTCGGTGAGCAACAGCGAGG
AGGAGGTGGAGCACATTGCACTACAGCGTGCGATCAGCGAGCTGAAGCGG
CCGCACGGCGGCAGCGAGCTGACGGCGATCGCGCTGCCGCGCGGCGACGC
GAGCCGGAGCTGGGGGAGCAAGGACGGCGTGCAGTGCTACGTGGTGGGCG
ACGCGTCGTGCTCGGCGGCGCAGTTGCTGGAGCGCGTGGGCGACGCGGTG
GCGGTGGCGGACGAGGGCGGCGGGGCGGCGGGCGAGACGCGCCACGGGCG
GCGCTGGGTCAGCAATGGCTTGCTGCTCGAGTTGgccaccgtcgccgccg
ccgccgccgGAGGCAGCGACTGCGCCGACGGTCGACGCCAGTACTGCTCG
TGGAACAGCGGCGACAGCGGCTCCGAGTACGTCGCGCAAGTGCGAAACAA
AATGGACGCCAGACACAGCGTGAGCGCCGCCAATACGGACGCCACCACCA
CGCCCATGGACGAGATGGTGCTCGCAAACGCGTTGAACATGTCGGCCATG
ATCTCCGCGAACACGGCCAATGAGAACGCGTACCGGAACGCGGAATCACC
GCGCGATGCACACTGTCGCCACTCGAGACACAGCCGCGACAGCGCTGGCG
ACGACACCTGA