Ggra6868.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6868.t1
Unique Name	Ggra6868.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	563

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:718091..719779 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85681.XP_006432265.1
PFAMs	NOP5NT,Nop
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14565
KEGG Pathway	ko03008,map03008
GOs	GO:0000154,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030684,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	4.22e-170
EggNOG OGs	COG1498@1\|root,KOG2572@2759\|Eukaryota,37JT9@33090\|Viridiplantae,3GGZ8@35493\|Streptophyta
Description	Nucleolar protein
COG category	AJ
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6868	Ggra6868	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 718091..719779 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6868.t1.start1	Ggra6868.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 718091..718093 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6868.t1.CDS1	Ggra6868.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 718091..719779 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6868.t1.exon1	Ggra6868.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 718091..719779 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6868.t1.stop1	Ggra6868.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 719777..719779 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6868.t1	Ggra6868.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 718091..719779 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:718091..719779+
coding sequence from alignment at tig00000056_pilon:718091..719779+

mRNA sequence

>Ggra6868.t1 ID=Ggra6868.t1|Name=Ggra6868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=563bp
MLVLFETPAGHALFKLLDDAVVRDATDTDLEAESTIKSLVKLKAFNKFAD
TTAAFSAATAILEGKPTKDLRKFLKKTVSDGEQIAVGDAKLGAAIKDKTG
LQCLFSQGVSDLMRGIRTNLDSLLQHEQHAAVAEQKRSAMVLGLAHSLSR
YKLKFSPDKVDTMIVQAINLLDELDKEINIYAMRLREWYGWHFPEMAKII
IENGAYAKAVHKMGVRSDAAGCDFSDIIGEDVEEELKRAAQISMGTEISD
EDVLNIRALCDQVISLTQYRATLYEYLKNRMAAIAPNLTTMVGELVGARL
IAHAGSLLNLAKYPASTVQILGAEKALFRALKTKHATPKYGLIYHASIVG
QAAPKHKGKISRSLAAKCALAIRVDALGEAGDDCTIGEQGRQAIEARLLQ
LEGKSEFAVSKLGFGKKQSAYRAAEGAGKAQSGIGDAIMGEEDAPGERVN
EVKMDVEREEVDVDEDGDHAEERRKSDKKKKKKKKKKDKQSSENGAADED
VEKEDEEVDKSGKKKKKKEKEKGSKSSEKKEKKKRKRESEGGGEVDGSEK
KKRKKKKKKGVE*

spliced messenger RNA

>Ggra6868.t1 ID=Ggra6868.t1|Name=Ggra6868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000056_pilon:718091..719779+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTGTTGTTCGAGACGCCTGCGGGCCACGCACTGTTCAAGCTGCT
CGATGATGCCGTCGTGCGCGACGCCACCGACACCGATCTCGAGGCCGAGT
CCACCATCAAGAGCCTCGTAAAGCTCAAGGCGTTCAACAAGTTTgccgac
accaccgccgccttctccgccgccaccgccATCCTGGAGGGAAAGCCCAC
CAAGGACTTGAGAAAGTTCTTGAAGAAGACCGTTTCGGACGGCGAGCAAA
TCGCCGTGGGAGACGCCAAGTTGGGCGCCGCTATCAAGGACAAGACCGGC
TTGCAATGCCTCTTCTCGCAGGGTGTCAGCGATCTTATGAGGGGCATTCG
CACCAATTTGGACTCCTTGTTGCAGCATGAGCAGCACGCTGCCGTTGCTG
AGCAGAAACGAAGTGCTATGGTTCTGGGGCTTGCGCACTCGCTCAGTCGC
TACAAGCTCAAGTTCTCGCCCGACAAGGTCGATACCATGATTGTTCAGGC
TATCAATTTGCTCGATGAACTGGACAAGGAGATCAATATTTATGCCATGA
GATTACGCGAGTGGTACGGCTGGCACTTTCCGGAGATGGCCAAGATCATC
ATCGAGAACGGCGCCTATGCCAAGGCTGTGCACAAGATGGGCGTGCGATC
CGACGCTGCCGGCTGTGACTTTAGTGATATTATTGGCGAAGATGTGGAGG
AAGAGCTCAAACGCGCCGCCCAGATATCCATGGGCACGGAGATTAGTGAC
GAGGATGTGCTTAATATTCGCGCCCTCTGTGACCAGGTGATCTCGCTCAC
ACAGTATCGTGCAACACTGTACGAGTATCTGAAGAACCGAATGGCTGCAA
TCGCCCCCAATCTCACCACCATGGTGGGCGAACTGGTGGGCGCAAGACTG
ATTGCGCACGCCGGTTCGCTGCTGAACCTGGCCAAGTATCCGGCATCCAC
CGTGCAGATCCTGGGAGCGGAGAAGGCTTTGTTCAGAGCGCTGAAAACAA
AACATGCTACGCCAAAGTATGGGCTCATCTACCATGCTTCCATCGTGGGT
CAGGCGGCTCCAAAACACAAGGGCAAGATTTCCAGGTCGCTGGCGGCAAA
ATGTGCGCTGGCCATTCGAGTGGACGCGCTGGGAGAGGCTGGTGATGACT
GCACAATAGGGGAGCAGGGCCGACAGGCTATCGAGGCTCGACTGTTGCAG
CTGGAAGGGAAGAGCGAGTTTGCTGTGTCGAAGCTTGGGTTTGGGAAGAA
GCAGAGCGCGTATCGCGCTGCGGAGGGCGCTGGCAAGGCGCAGAGTGGTA
TTGGGGACGCTATCATGGGTGAGGAGGATGCGCCCGGTGAACGGGTGAAT
GAGGTGAAGATGGACGTAGAACGGGAGGAGGTGGATGTGGATGAGGATGG
GGATCACGCTGAGGAACGGAGGAAGTCGGACaagaagaagaagaagaaga
agaagaagaagGATAAGCAAAGTAGCGAGAATGGGGCTGCTGACGAAGAT
GTGGAGAAGGAGGATGAGGAGGTGGACAAGTCGGGCaagaagaagaagaa
gaaagagaaggaaaaggggagcaaatcaagcgaaaagaaggagaagaaga
agagaaagcgagagTCGGAGGGCGGCGGAGAGGTGGATGGGTCGGagaag
aagaagaggaagaagaagaagaagaagGGTGTAGAGTGA

protein sequence of Ggra6868.t1

>Ggra6868.t1 ID=Ggra6868.t1|Name=Ggra6868.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=563bp
MLVLFETPAGHALFKLLDDAVVRDATDTDLEAESTIKSLVKLKAFNKFAD
TTAAFSAATAILEGKPTKDLRKFLKKTVSDGEQIAVGDAKLGAAIKDKTG
LQCLFSQGVSDLMRGIRTNLDSLLQHEQHAAVAEQKRSAMVLGLAHSLSR
YKLKFSPDKVDTMIVQAINLLDELDKEINIYAMRLREWYGWHFPEMAKII
IENGAYAKAVHKMGVRSDAAGCDFSDIIGEDVEEELKRAAQISMGTEISD
EDVLNIRALCDQVISLTQYRATLYEYLKNRMAAIAPNLTTMVGELVGARL
IAHAGSLLNLAKYPASTVQILGAEKALFRALKTKHATPKYGLIYHASIVG
QAAPKHKGKISRSLAAKCALAIRVDALGEAGDDCTIGEQGRQAIEARLLQ
LEGKSEFAVSKLGFGKKQSAYRAAEGAGKAQSGIGDAIMGEEDAPGERVN
EVKMDVEREEVDVDEDGDHAEERRKSDKKKKKKKKKKDKQSSENGAADED
VEKEDEEVDKSGKKKKKKEKEKGSKSSEKKEKKKRKRESEGGGEVDGSEK
KKRKKKKKKGVE*

mRNA from alignment at tig00000056_pilon:718091..719779+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6868.t1 ID=Ggra6868.t1|Name=Ggra6868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000056_pilon:718091..719779+ (Gracilaria gracilis GNS1m male)
ATGTTGGTGTTGTTCGAGACGCCTGCGGGCCACGCACTGTTCAAGCTGCT
CGATGATGCCGTCGTGCGCGACGCCACCGACACCGATCTCGAGGCCGAGT
CCACCATCAAGAGCCTCGTAAAGCTCAAGGCGTTCAACAAGTTTgccgac
accaccgccgccttctccgccgccaccgccATCCTGGAGGGAAAGCCCAC
CAAGGACTTGAGAAAGTTCTTGAAGAAGACCGTTTCGGACGGCGAGCAAA
TCGCCGTGGGAGACGCCAAGTTGGGCGCCGCTATCAAGGACAAGACCGGC
TTGCAATGCCTCTTCTCGCAGGGTGTCAGCGATCTTATGAGGGGCATTCG
CACCAATTTGGACTCCTTGTTGCAGCATGAGCAGCACGCTGCCGTTGCTG
AGCAGAAACGAAGTGCTATGGTTCTGGGGCTTGCGCACTCGCTCAGTCGC
TACAAGCTCAAGTTCTCGCCCGACAAGGTCGATACCATGATTGTTCAGGC
TATCAATTTGCTCGATGAACTGGACAAGGAGATCAATATTTATGCCATGA
GATTACGCGAGTGGTACGGCTGGCACTTTCCGGAGATGGCCAAGATCATC
ATCGAGAACGGCGCCTATGCCAAGGCTGTGCACAAGATGGGCGTGCGATC
CGACGCTGCCGGCTGTGACTTTAGTGATATTATTGGCGAAGATGTGGAGG
AAGAGCTCAAACGCGCCGCCCAGATATCCATGGGCACGGAGATTAGTGAC
GAGGATGTGCTTAATATTCGCGCCCTCTGTGACCAGGTGATCTCGCTCAC
ACAGTATCGTGCAACACTGTACGAGTATCTGAAGAACCGAATGGCTGCAA
TCGCCCCCAATCTCACCACCATGGTGGGCGAACTGGTGGGCGCAAGACTG
ATTGCGCACGCCGGTTCGCTGCTGAACCTGGCCAAGTATCCGGCATCCAC
CGTGCAGATCCTGGGAGCGGAGAAGGCTTTGTTCAGAGCGCTGAAAACAA
AACATGCTACGCCAAAGTATGGGCTCATCTACCATGCTTCCATCGTGGGT
CAGGCGGCTCCAAAACACAAGGGCAAGATTTCCAGGTCGCTGGCGGCAAA
ATGTGCGCTGGCCATTCGAGTGGACGCGCTGGGAGAGGCTGGTGATGACT
GCACAATAGGGGAGCAGGGCCGACAGGCTATCGAGGCTCGACTGTTGCAG
CTGGAAGGGAAGAGCGAGTTTGCTGTGTCGAAGCTTGGGTTTGGGAAGAA
GCAGAGCGCGTATCGCGCTGCGGAGGGCGCTGGCAAGGCGCAGAGTGGTA
TTGGGGACGCTATCATGGGTGAGGAGGATGCGCCCGGTGAACGGGTGAAT
GAGGTGAAGATGGACGTAGAACGGGAGGAGGTGGATGTGGATGAGGATGG
GGATCACGCTGAGGAACGGAGGAAGTCGGACaagaagaagaagaagaaga
agaagaagaagGATAAGCAAAGTAGCGAGAATGGGGCTGCTGACGAAGAT
GTGGAGAAGGAGGATGAGGAGGTGGACAAGTCGGGCaagaagaagaagaa
gaaagagaaggaaaaggggagcaaatcaagcgaaaagaaggagaagaaga
agagaaagcgagagTCGGAGGGCGGCGGAGAGGTGGATGGGTCGGagaag
aagaagaggaagaagaagaagaagaagGGTGTAGAGTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:718091..719779+

>Ggra6868.t1 ID=Ggra6868.t1|Name=Ggra6868.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000056_pilon:718091..719779+ (Gracilaria gracilis GNS1m male)
ATGTTGGTGTTGTTCGAGACGCCTGCGGGCCACGCACTGTTCAAGCTGCT
CGATGATGCCGTCGTGCGCGACGCCACCGACACCGATCTCGAGGCCGAGT
CCACCATCAAGAGCCTCGTAAAGCTCAAGGCGTTCAACAAGTTTgccgac
accaccgccgccttctccgccgccaccgccATCCTGGAGGGAAAGCCCAC
CAAGGACTTGAGAAAGTTCTTGAAGAAGACCGTTTCGGACGGCGAGCAAA
TCGCCGTGGGAGACGCCAAGTTGGGCGCCGCTATCAAGGACAAGACCGGC
TTGCAATGCCTCTTCTCGCAGGGTGTCAGCGATCTTATGAGGGGCATTCG
CACCAATTTGGACTCCTTGTTGCAGCATGAGCAGCACGCTGCCGTTGCTG
AGCAGAAACGAAGTGCTATGGTTCTGGGGCTTGCGCACTCGCTCAGTCGC
TACAAGCTCAAGTTCTCGCCCGACAAGGTCGATACCATGATTGTTCAGGC
TATCAATTTGCTCGATGAACTGGACAAGGAGATCAATATTTATGCCATGA
GATTACGCGAGTGGTACGGCTGGCACTTTCCGGAGATGGCCAAGATCATC
ATCGAGAACGGCGCCTATGCCAAGGCTGTGCACAAGATGGGCGTGCGATC
CGACGCTGCCGGCTGTGACTTTAGTGATATTATTGGCGAAGATGTGGAGG
AAGAGCTCAAACGCGCCGCCCAGATATCCATGGGCACGGAGATTAGTGAC
GAGGATGTGCTTAATATTCGCGCCCTCTGTGACCAGGTGATCTCGCTCAC
ACAGTATCGTGCAACACTGTACGAGTATCTGAAGAACCGAATGGCTGCAA
TCGCCCCCAATCTCACCACCATGGTGGGCGAACTGGTGGGCGCAAGACTG
ATTGCGCACGCCGGTTCGCTGCTGAACCTGGCCAAGTATCCGGCATCCAC
CGTGCAGATCCTGGGAGCGGAGAAGGCTTTGTTCAGAGCGCTGAAAACAA
AACATGCTACGCCAAAGTATGGGCTCATCTACCATGCTTCCATCGTGGGT
CAGGCGGCTCCAAAACACAAGGGCAAGATTTCCAGGTCGCTGGCGGCAAA
ATGTGCGCTGGCCATTCGAGTGGACGCGCTGGGAGAGGCTGGTGATGACT
GCACAATAGGGGAGCAGGGCCGACAGGCTATCGAGGCTCGACTGTTGCAG
CTGGAAGGGAAGAGCGAGTTTGCTGTGTCGAAGCTTGGGTTTGGGAAGAA
GCAGAGCGCGTATCGCGCTGCGGAGGGCGCTGGCAAGGCGCAGAGTGGTA
TTGGGGACGCTATCATGGGTGAGGAGGATGCGCCCGGTGAACGGGTGAAT
GAGGTGAAGATGGACGTAGAACGGGAGGAGGTGGATGTGGATGAGGATGG
GGATCACGCTGAGGAACGGAGGAAGTCGGACaagaagaagaagaagaaga
agaagaagaagGATAAGCAAAGTAGCGAGAATGGGGCTGCTGACGAAGAT
GTGGAGAAGGAGGATGAGGAGGTGGACAAGTCGGGCaagaagaagaagaa
gaaagagaaggaaaaggggagcaaatcaagcgaaaagaaggagaagaaga
agagaaagcgagagTCGGAGGGCGGCGGAGAGGTGGATGGGTCGGagaag
aagaagaggaagaagaagaagaagaagGGTGTAGAGTGA