Ggra6760.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6760.t1
Unique NameGgra6760.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:449126..449680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog985867.AEWF01000003_gene855
Preferred namessb
PFAMsSSB
Max annot lvl766|Rickettsiales
KEGG koko:K03111
KEGG Pathwayko03030,ko03430,ko03440,map03030,map03430,map03440
Evalue1.29e-10
EggNOG OGsCOG0629@1|root,COG0629@2|Bacteria,1RCWT@1224|Proteobacteria,2U5BZ@28211|Alphaproteobacteria,47FEH@766|Rickettsiales
DescriptionPlays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
COG categoryL
BRITEko00000,ko00001,ko03029,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6760Ggra6760Gracilaria gracilis GNS1m malegenetig00000056_pilon 449126..449680 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6760.t1.start1Ggra6760.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 449126..449128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6760.t1.CDS1Ggra6760.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 449126..449680 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6760.t1.exon1Ggra6760.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 449126..449680 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6760.t1.stop1Ggra6760.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 449678..449680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6760.t1Ggra6760.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 449126..449680 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6760.t1 ID=Ggra6760.t1|Name=Ggra6760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MLRASGLEAGTFLRHALKTRTNAVPVAARRSYEAQSSDGEARSNAMAHRK
QSPYKSLCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNN
ETQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVN
VNVSQGFGMVRVLSMPRSVEMDGDAALHDKKLPF*
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spliced messenger RNA

>Ggra6760.t1 ID=Ggra6760.t1|Name=Ggra6760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000056_pilon:449126..449680+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCGCCAGCGGATTAGAAGCCGGCACATTTCTCCGCCACGCCCT
CAAAACTCGAACAAATGCTGTTCCTGTCGCAGCTCGGCGCAGCTATGAAG
CGCAATCATCGGACGGAGAAGCGCGTTCAAACGCAATGGCGCATCGAAAG
CAATCGCCGTACAAGAGTTTATGCAAACTGACCTTGATCGGTCGCACAGG
CGCCGTACCGCAAGTAAGGAACTTTGACGATGGTTCAAGCGCGTTGACCA
TAAGCGTGGCCACCACTCATCCGCCCAGCAACAGAATTGATGGAAACAAT
GAGACGCAGTGGCACAATGTGTTTGTATCGCAGTCTACGCCGGGATTTTC
GTTCTTCGAGCAGCTTCCGGTGGGATCGCAGCTCTACGTTGAGGGGCTAA
TGAGAATCAGGACGGTTGAAAGAGACGGCGAGAGACGACAGTACGTCAAT
GTCAACGTCTCGCAAGGTTTCGGTATGGTTCGCGTACTTTCTATGCCCCG
CAGCGTCGAAATGGACGGCGACGCCGCGCTACACGACAAGAAGCTGCCGT
TTTAG
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protein sequence of Ggra6760.t1

>Ggra6760.t1 ID=Ggra6760.t1|Name=Ggra6760.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MLRASGLEAGTFLRHALKTRTNAVPVAARRSYEAQSSDGEARSNAMAHRK
QSPYKSLCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNN
ETQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVN
VNVSQGFGMVRVLSMPRSVEMDGDAALHDKKLPF*
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mRNA from alignment at tig00000056_pilon:449126..449680+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6760.t1 ID=Ggra6760.t1|Name=Ggra6760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000056_pilon:449126..449680+ (Gracilaria gracilis GNS1m male)
ATGCTGCGCGCCAGCGGATTAGAAGCCGGCACATTTCTCCGCCACGCCCT
CAAAACTCGAACAAATGCTGTTCCTGTCGCAGCTCGGCGCAGCTATGAAG
CGCAATCATCGGACGGAGAAGCGCGTTCAAACGCAATGGCGCATCGAAAG
CAATCGCCGTACAAGAGTTTATGCAAACTGACCTTGATCGGTCGCACAGG
CGCCGTACCGCAAGTAAGGAACTTTGACGATGGTTCAAGCGCGTTGACCA
TAAGCGTGGCCACCACTCATCCGCCCAGCAACAGAATTGATGGAAACAAT
GAGACGCAGTGGCACAATGTGTTTGTATCGCAGTCTACGCCGGGATTTTC
GTTCTTCGAGCAGCTTCCGGTGGGATCGCAGCTCTACGTTGAGGGGCTAA
TGAGAATCAGGACGGTTGAAAGAGACGGCGAGAGACGACAGTACGTCAAT
GTCAACGTCTCGCAAGGTTTCGGTATGGTTCGCGTACTTTCTATGCCCCG
CAGCGTCGAAATGGACGGCGACGCCGCGCTACACGACAAGAAGCTGCCGT
TTTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:449126..449680+

>Ggra6760.t1 ID=Ggra6760.t1|Name=Ggra6760.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000056_pilon:449126..449680+ (Gracilaria gracilis GNS1m male)
ATGCTGCGCGCCAGCGGATTAGAAGCCGGCACATTTCTCCGCCACGCCCT
CAAAACTCGAACAAATGCTGTTCCTGTCGCAGCTCGGCGCAGCTATGAAG
CGCAATCATCGGACGGAGAAGCGCGTTCAAACGCAATGGCGCATCGAAAG
CAATCGCCGTACAAGAGTTTATGCAAACTGACCTTGATCGGTCGCACAGG
CGCCGTACCGCAAGTAAGGAACTTTGACGATGGTTCAAGCGCGTTGACCA
TAAGCGTGGCCACCACTCATCCGCCCAGCAACAGAATTGATGGAAACAAT
GAGACGCAGTGGCACAATGTGTTTGTATCGCAGTCTACGCCGGGATTTTC
GTTCTTCGAGCAGCTTCCGGTGGGATCGCAGCTCTACGTTGAGGGGCTAA
TGAGAATCAGGACGGTTGAAAGAGACGGCGAGAGACGACAGTACGTCAAT
GTCAACGTCTCGCAAGGTTTCGGTATGGTTCGCGTACTTTCTATGCCCCG
CAGCGTCGAAATGGACGGCGACGCCGCGCTACACGACAAGAAGCTGCCGT
TTTAG
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