Ggra6760.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6760.t1
Unique NameGgra6760.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Homology
BLAST of Ggra6760.t1 vs. uniprot
Match: R7Q9S9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9S9_CHOCR)

HSP 1 Score: 146 bits (368), Expect = 1.520e-41
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 0
Query:   51 QSPYKSLCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNETQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVNVNVSQGFGMVRVLSMPR 167
            ++PY+SLCKLTLIGRTG+   VR FDDGSS+LT+++AT H      D   ETQWH VFV+ +  GF    +L VGS +YVEG MR+ TVER+GE +QYVNV V +G GMVR+LS PR
Sbjct:   36 ENPYRSLCKLTLIGRTGSPADVREFDDGSSSLTLNIATNHNSGGANDWKVETQWHKVFVAGNVTGFGVLSELAVGSLVYVEGNMRVATVEREGEMKQYVNVKVGRGEGMVRILSSPR 152          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A6L4YSP5 (Single-stranded DNA-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6L4YSP5_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 4.920e-10
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 0
Query:   59 KLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNE-TQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVNV 151
            K+ LIG  G  P+++NFD G    + S+ATT    NR   + E T+WHN+ + +     +  + L  GSQ+Y+EG +R R+ E+DG++R    +
Sbjct:    7 KVILIGNLGKDPEIQNFDKGVKKASFSLATTETYRNREGQDIEQTEWHNIILWRGLAEVAE-KYLRKGSQVYIEGRIRSRSFEKDGQKRYITEI 99          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A497CFB5 (Single-stranded DNA-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A497CFB5_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 6.620e-10
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 0
Query:   57 LCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGN-NETQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVNVNVSQGF--GMVRVLSMPRSVE 170
            L K+ LIG  G  P+++ F++G+     S+AT+    N+       T+WHNV V  +       + +  GS++Y+EG ++ R+ E+DGE++ Y+   V + F  GMV + S P S E
Sbjct:    2 LNKVQLIGNLGKDPEIKEFENGNKVANFSIATSESYKNKSGERVTNTEWHNVTVFGNLVDI-IEKYVKKGSKIYIEGKLKTRSWEKDGEKK-YITEIVLEQFRGGMVMLDSKPSSEE 116          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A2N2ZWG2 (Single-stranded DNA-binding protein n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A2N2ZWG2_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 9.410e-10
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   55 KSLCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNE-TQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERR 146
            + + K  LIG  G  P+++NFD G    + S+ATT    NR     E T+WHN+ + +     +  + L  GSQ+Y+EG +R R+ E+DG++R
Sbjct:    3 RGINKAILIGNLGKDPEIQNFDKGVKKASFSLATTETYRNREGQEMEQTEWHNIVLWRGLADIAE-KYLRKGSQVYIEGRIRNRSYEKDGQKR 94          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A7Z1R3T4 (Single-stranded DNA-binding protein n=1 Tax=Holophagae bacterium TaxID=2073116 RepID=A0A7Z1R3T4_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.620e-9
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 0
Query:   59 KLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNETQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVNVN 152
            K+ L+G  G  P +++   G    T S+ATT   S    GN  T+WHN+ V+           +  G QLY+EG +R RT E+DG+++ +  ++
Sbjct:    5 KVILVGHVGRDPVLKSLPSGKHIATFSLATTDKRSKDESGNPRTEWHNI-VAWDKLAEICERYVTKGKQLYIEGSIRTRTYEQDGQKKYFTEIH 97          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A0S7BUF8 (Single-stranded DNA-binding protein n=3 Tax=root TaxID=1 RepID=A0A0S7BUF8_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.840e-9
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 0
Query:   59 KLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNE-TQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVNV 151
            K  LIG  G  P+++NFD G    + S+ATT    NR     E T+WHN+ + +     +  + L  GSQ+Y+EG +R R+ E+DG++R    +
Sbjct:    7 KAILIGNLGRDPEIQNFDKGVKKASFSLATTETYRNREGQEMEQTEWHNIILWRGLAEIAE-KFLRKGSQVYIEGRIRNRSYEKDGQKRYITEI 99          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A3C0BCC2 (Single-stranded DNA-binding protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3C0BCC2_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.920e-9
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   59 KLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGN-NETQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVNVNVSQ 155
            K+ LIG  G  P+V NFD+G    + S+AT     NR     + T+WHN+ + +     +  + L  GSQ+Y+EG +R R+ E+DG++R   ++  ++
Sbjct:    7 KVILIGNLGKDPEVVNFDNGVKKASFSLATNDSYKNREGQEVDRTEWHNIVMWRGLAEVAE-KYLRKGSQVYIEGSLRTRSYEKDGQKRYITDIECTE 103          
BLAST of Ggra6760.t1 vs. uniprot
Match: single-stranded DNA-binding protein n=1 Tax=Candidatus Odyssella thessalonicensis TaxID=84647 RepID=UPI000225C21E (single-stranded DNA-binding protein n=1 Tax=Candidatus Odyssella thessalonicensis TaxID=84647 RepID=UPI000225C21E)

HSP 1 Score: 63.5 bits (153), Expect = 2.050e-9
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   56 SLCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNE--TQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIR 137
            S+ K+TL+GR G  P+VRN  DG+  +T+SVAT+    +R  G  +  T+WH V +     G      L  GSQ+YVEG ++ R
Sbjct:    4 SVNKVTLVGRLGKDPEVRNSPDGAKIVTMSVATSEAWKDRSSGEKKERTEWHRVVIFNEKLGEIAERYLKKGSQVYVEGSLQTR 87          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A077AYK7 (Single-stranded DNA-binding protein n=1 Tax=Candidatus Paracaedibacter acanthamoebae TaxID=91604 RepID=A0A077AYK7_9PROT)

HSP 1 Score: 62.8 bits (151), Expect = 3.900e-9
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   56 SLCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNE--TQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIR 137
            S+ K+TLIGR G  P+VRN  DGS  +T+SVAT+    +R  G  +  T+WH V +     G      L  G Q+Y+EG ++ R
Sbjct:    4 SVNKVTLIGRLGKDPEVRNSPDGSKIVTMSVATSETWKDRASGERKERTEWHRVVIFNEKLGEIAERYLKKGGQVYLEGSLQTR 87          
BLAST of Ggra6760.t1 vs. uniprot
Match: A0A1H9L5G9 (Single-stranded DNA-binding protein n=1 Tax=Solimonas aquatica TaxID=489703 RepID=A0A1H9L5G9_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 7.030e-9
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 0
Query:   59 KLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNNE--TQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVNVNV 153
            K+ LIG  G  P+VR F  G +    ++ATT    ++  G  +  T+WHNV V     G    + L  GS++YVEG +R R+ ++DG++R    + V
Sbjct:    7 KVILIGNLGKDPEVRYFPSGDAVANATIATTETWKDKQSGEQKEATEWHNV-VFPGKLGEIAGKYLKKGSKVYVEGSLRTRSYDKDGQKRYVTEIRV 102          
The following BLAST results are available for this feature:
BLAST of Ggra6760.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q9S91.520e-4158.97Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6L4YSP54.920e-1036.17Single-stranded DNA-binding protein n=1 Tax=Bacter... [more]
A0A497CFB56.620e-1033.33Single-stranded DNA-binding protein n=1 Tax=Bacter... [more]
A0A2N2ZWG29.410e-1036.56Single-stranded DNA-binding protein n=2 Tax=unclas... [more]
A0A7Z1R3T41.620e-932.98Single-stranded DNA-binding protein n=1 Tax=Holoph... [more]
A0A0S7BUF81.840e-936.17Single-stranded DNA-binding protein n=3 Tax=root T... [more]
A0A3C0BCC21.920e-933.67Single-stranded DNA-binding protein n=1 Tax=Bacter... [more]
single-stranded DNA-binding protein n=1 Tax=Candidatus Odyssella thessalonicensis TaxID=84647 RepID=UPI000225C21E2.050e-940.48single-stranded DNA-binding protein n=1 Tax=Candid... [more]
A0A077AYK73.900e-940.48Single-stranded DNA-binding protein n=1 Tax=Candid... [more]
A0A1H9L5G97.030e-935.05Single-stranded DNA-binding protein n=1 Tax=Solimo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000424Primosome PriB/single-strand DNA-bindingPFAMPF00436SSBcoord: 59..154
e-value: 2.9E-12
score: 46.5
IPR000424Primosome PriB/single-strand DNA-bindingPROSITEPS50935SSBcoord: 57..160
score: 14.072118
IPR000424Primosome PriB/single-strand DNA-bindingCDDcd04496SSB_OBFcoord: 61..155
e-value: 4.82991E-17
score: 70.7189
NoneNo IPR availableGENE3D2.40.50.140coord: 54..176
e-value: 1.0E-16
score: 63.2
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 59..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:449126..449680 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6760.t1Ggra6760.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 449126..449680 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6760.t1 ID=Ggra6760.t1|Name=Ggra6760.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MLRASGLEAGTFLRHALKTRTNAVPVAARRSYEAQSSDGEARSNAMAHRK
QSPYKSLCKLTLIGRTGAVPQVRNFDDGSSALTISVATTHPPSNRIDGNN
ETQWHNVFVSQSTPGFSFFEQLPVGSQLYVEGLMRIRTVERDGERRQYVN
VNVSQGFGMVRVLSMPRSVEMDGDAALHDKKLPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000424Primosome_PriB/ssb
IPR012340NA-bd_OB-fold