Ggra6721.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6721.t1
Unique NameGgra6721.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:288172..288483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173025.GEI7407_0890
Preferred namehliC
PFAMsChloroa_b-bind
Max annot lvl1117|Cyanobacteria
Evalue9.72e-10
EggNOG OGs2EACI@1|root,334GG@2|Bacteria,1G907@1117|Cyanobacteria,1HCSY@1150|Oscillatoriales
DescriptionPFAM Chlorophyll A-B binding protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6721Ggra6721Gracilaria gracilis GNS1m malegenetig00000056_pilon 288172..288483 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6721.t1.stop1Ggra6721.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 288172..288174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6721.t1.CDS1Ggra6721.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 288172..288483 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6721.t1.exon1Ggra6721.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 288172..288483 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6721.t1.start1Ggra6721.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 288481..288483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6721.t1Ggra6721.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 288172..288483 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6721.t1 ID=Ggra6721.t1|Name=Ggra6721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MAFITATPILARPTTALNTTSFSTRRAVAAAPVRRAAVRMVSEEPKFEKI
PQGFTGFSEVLNGRAAMMGFLLAVITEAITGKGILGQVGSIFEIVNLSSA
LGN*
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spliced messenger RNA

>Ggra6721.t1 ID=Ggra6721.t1|Name=Ggra6721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000056_pilon:288172..288483- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCATCACCGCAACCCCCATCCTCGCTCGCCCGACTACCGCCCT
CAACACCACCTCATTCTCCACACGTCGTGCCGTTGCCGCGGCGCCTGTAC
GTCGCGCGGCCGTTCGAATGGTCAGTGAAGAGCCCAAGTTTGAGAAGATT
CCTCAAGGATTCACTGGCTTCTCAGAGGTTCTCAATGGAAGAGCCGCTAT
GATGGGCTTCCTGCTCGCCGTTATCACCGAGGCTATCACTGGAAAGGGTA
TCCTTGGACAGGTGGGATCCATCTTCGAGATTGTGAACTTGTCATCTGCC
CTCGGCAATTAA
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protein sequence of Ggra6721.t1

>Ggra6721.t1 ID=Ggra6721.t1|Name=Ggra6721.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MAFITATPILARPTTALNTTSFSTRRAVAAAPVRRAAVRMVSEEPKFEKI
PQGFTGFSEVLNGRAAMMGFLLAVITEAITGKGILGQVGSIFEIVNLSSA
LGN*
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mRNA from alignment at tig00000056_pilon:288172..288483-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6721.t1 ID=Ggra6721.t1|Name=Ggra6721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000056_pilon:288172..288483- (Gracilaria gracilis GNS1m male)
ATGGCTTTCATCACCGCAACCCCCATCCTCGCTCGCCCGACTACCGCCCT
CAACACCACCTCATTCTCCACACGTCGTGCCGTTGCCGCGGCGCCTGTAC
GTCGCGCGGCCGTTCGAATGGTCAGTGAAGAGCCCAAGTTTGAGAAGATT
CCTCAAGGATTCACTGGCTTCTCAGAGGTTCTCAATGGAAGAGCCGCTAT
GATGGGCTTCCTGCTCGCCGTTATCACCGAGGCTATCACTGGAAAGGGTA
TCCTTGGACAGGTGGGATCCATCTTCGAGATTGTGAACTTGTCATCTGCC
CTCGGCAATTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:288172..288483-

>Ggra6721.t1 ID=Ggra6721.t1|Name=Ggra6721.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000056_pilon:288172..288483- (Gracilaria gracilis GNS1m male)
ATGGCTTTCATCACCGCAACCCCCATCCTCGCTCGCCCGACTACCGCCCT
CAACACCACCTCATTCTCCACACGTCGTGCCGTTGCCGCGGCGCCTGTAC
GTCGCGCGGCCGTTCGAATGGTCAGTGAAGAGCCCAAGTTTGAGAAGATT
CCTCAAGGATTCACTGGCTTCTCAGAGGTTCTCAATGGAAGAGCCGCTAT
GATGGGCTTCCTGCTCGCCGTTATCACCGAGGCTATCACTGGAAAGGGTA
TCCTTGGACAGGTGGGATCCATCTTCGAGATTGTGAACTTGTCATCTGCC
CTCGGCAATTAA
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