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Homology
BLAST of Ggra6768.t1 vs. uniprot
Match: A0A2V3IX43 (Small nuclear ribonucleoprotein Sm D-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX43_9FLOR) HSP 1 Score: 137 bits (345), Expect = 2.290e-34 Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 0
Query: 380 AQPVDNVAACVHLEHAPYRILKPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLGRAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLDARQAGQLLIRGENIVLIT 517
A+P++NVAAC HL+HAPYR+L P P+T + + PR S+ +A VL AIH KA +GPL+LL RA + VR+ +RERHRIRGFVEGVV AFD+H N+V+ NAV++D+ R QL IRGEN+V ++
Sbjct: 41 AKPLNNVAACAHLQHAPYRLLTPRPVT---AAPKQPTPRKRSRSSAGK----GVLDAIHSKAGEGPLQLLKRAADHALNVRVCIRERHRIRGFVEGVVDAFDKHFNLVLSNAVVKDHDCKPRSVNQLFIRGENVVHVS 171
BLAST of Ggra6768.t1 vs. uniprot
Match: A0A5J4YU44 (Small nuclear ribonucleoprotein Sm D-like protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU44_PORPP) HSP 1 Score: 64.7 bits (156), Expect = 2.630e-8 Identity = 44/149 (29.53%), Postives = 68/149 (45.64%), Query Frame = 0
Query: 383 VDNVAACVHLEHAPYRILKPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLGRAVANKFL--------------VRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLD-ARQAGQLLIRGENIVLI 516
+DNVA C ++ PYR+L P + + + A A E H A + +E LG V KF V + +R H +RG++ G +VAFD+H N+V++ AV +R G +L+RGE++V I
Sbjct: 49 LDNVAMCASVQQKPYRLLVRAPKPPSATAEEPSAASASGYAATTPETHR------HDAAKRSTIEHLGAKVTAKFPPHQLLSVSVETQEPVEVLVRHTHALRGYIHGRLVAFDKHFNLVIQQAVETSMNRQQSRLLGHVLLRGEHVVRI 191
BLAST of Ggra6768.t1 vs. uniprot
Match: SMDL (Small nuclear ribonucleoprotein Sm D-like protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SMDL_DICDI) HSP 1 Score: 59.7 bits (143), Expect = 2.650e-6 Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 0
Query: 433 VLQAIHQKAAKGPLELLGRAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGL-----------------DARQAGQLLIRGENIVLI 516
+L+ I K GPL LL RA+ +K +++ +R + IRG+ G ++AFD+HMNI++R+ V ++Y L R GQL I+G+ +V +
Sbjct: 154 ILKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRD-VEEEYDLLKSLPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSV 253
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
| IPR002110 | Ankyrin repeat | PRINTS | PR01415 | ANKYRIN | coord: 36..51 score: 45.52 coord: 117..131 score: 43.66 |
| IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 204..233 e-value: 3.6E-4 score: 29.9 coord: 101..130 e-value: 2.8E-4 score: 30.2 coord: 170..199 e-value: 4.8E-4 score: 29.4 coord: 238..267 e-value: 0.22 score: 20.6 coord: 2..31 e-value: 1200.0 score: 4.4 coord: 68..97 e-value: 9.7E-6 score: 35.1 coord: 271..300 e-value: 0.028 score: 23.6 coord: 35..64 e-value: 2.3E-4 score: 30.5 |
| IPR002110 | Ankyrin repeat | PFAM | PF13637 | Ank_4 | coord: 249..291 e-value: 5.8E-5 score: 23.6 |
| IPR002110 | Ankyrin repeat | PFAM | PF12796 | Ank_2 | coord: 163..235 e-value: 3.0E-11 score: 43.7 coord: 10..98 e-value: 2.3E-17 score: 63.3 |
| IPR002110 | Ankyrin repeat | PFAM | PF00023 | Ank | coord: 102..131 e-value: 1.9E-5 score: 24.9 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 238..270 score: 9.91158 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 204..236 score: 13.73111 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 170..202 score: 11.78128 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 35..67 score: 14.82622 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 271..303 score: 10.55262 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 101..133 score: 13.11678 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 68..100 score: 14.47899 |
| IPR001163 | LSM domain, eukaryotic/archaea-type | SMART | SM00651 | Sm3 | coord: 447..518 e-value: 5.4E-6 score: 35.9 |
| IPR001163 | LSM domain, eukaryotic/archaea-type | PFAM | PF01423 | LSM | coord: 473..517 e-value: 3.5E-9 score: 36.2 |
| IPR036770 | Ankyrin repeat-containing domain superfamily | GENE3D | 1.25.40.20 | | coord: 202..326 e-value: 2.9E-30 score: 106.9 |
| IPR036770 | Ankyrin repeat-containing domain superfamily | GENE3D | 1.25.40.20 | | coord: 150..201 e-value: 1.9E-9 score: 39.5 |
| IPR036770 | Ankyrin repeat-containing domain superfamily | GENE3D | 1.25.40.20 | | coord: 6..69 e-value: 7.6E-20 score: 73.1 |
| IPR036770 | Ankyrin repeat-containing domain superfamily | GENE3D | 1.25.40.20 | | coord: 70..149 e-value: 5.0E-23 score: 83.1 |
| IPR036770 | Ankyrin repeat-containing domain superfamily | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 7..311 |
| None | No IPR available | GENE3D | 2.30.30.100 | | coord: 419..519 e-value: 1.9E-15 score: 58.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 302..386 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 329..365 |
| None | No IPR available | PANTHER | PTHR24193:SF119 | ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM D | coord: 205..311 |
| None | No IPR available | PANTHER | PTHR24193:SF119 | ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM D | coord: 155..235 coord: 6..133 |
| None | No IPR available | PANTHER | PTHR24193 | ANKYRIN REPEAT PROTEIN | coord: 155..235 coord: 205..311 |
| None | No IPR available | PANTHER | PTHR24193 | ANKYRIN REPEAT PROTEIN | coord: 74..196 |
| None | No IPR available | PANTHER | PTHR24193:SF119 | ADA2A-CONTAINING COMPLEX COMPONENT 3, ISOFORM D | coord: 74..196 |
| None | No IPR available | PANTHER | PTHR24193 | ANKYRIN REPEAT PROTEIN | coord: 6..133 |
| None | No IPR available | PROSITE | PS50297 | ANK_REP_REGION | coord: 68..99 score: 13.097776 |
| None | No IPR available | PROSITE | PS50297 | ANK_REP_REGION | coord: 101..131 score: 12.009989 |
| None | No IPR available | PROSITE | PS50297 | ANK_REP_REGION | coord: 170..198 score: 10.922203 |
| None | No IPR available | PROSITE | PS50297 | ANK_REP_REGION | coord: 35..67 score: 13.442684 |
| None | No IPR available | PROSITE | PS50297 | ANK_REP_REGION | coord: 238..266 score: 8.613973 |
| None | No IPR available | PROSITE | PS50297 | ANK_REP_REGION | coord: 271..297 score: 9.648697 |
| None | No IPR available | PROSITE | PS50297 | ANK_REP_REGION | coord: 204..236 score: 12.354897 |
| IPR010920 | LSM domain superfamily | SUPERFAMILY | 50182 | Sm-like ribonucleoproteins | coord: 444..518 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Ggra6768.t1 ID=Ggra6768.t1|Name=Ggra6768.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp MCFAQQLRSAASRANLTFVIELLACGADVNATDPLGQTALHLAAENGHQQ VVAALLAAGAHVNAKDKDGQTAFHHAVENGHQQVVAALLERGADIQAVDS LGRTALHVAAYHGHKCVVETLLLHGADVHAKAQIGWMAAYDESDADNDEL QDQVEGVLNHTAGVNATSPYGVTALHLAAAEGHRDVVDMLLWHDANLHCR ADFAGITALHVAAASGYEQVVVALLARGADLHARDDLNRFNAFHFTTHEG HERVVAVLLERGANVHSKHQFGDTALHLAAAKRHERVADMLWSAGADPFA DNHKGESPLQLLPRTSPLADRMRHKRPSPPPSVAQPSPPPSVTHLSPPPS VTHLSSPPSVTHLSPPPTAAPQQQEGHPPAQPVDNVAACVHLEHAPYRIL KPNPITVNLSTQSKKRPRAGSQRAANSERRVSVLQAIHQKAAKGPLELLG RAVANKFLVRIRLRERHRIRGFVEGVVVAFDRHMNIVVRNAVIQDYGLDA RQAGQLLIRGENIVLITIAT* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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