Ggra6705.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6705.t1
Unique Name	Ggra6705.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:248557..249453 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004345401.1
PFAMs	Metallophos
Max annot lvl	33154\|Opisthokonta
Evalue	2.81e-09
EggNOG OGs	COG2129@1\|root,2S3P6@2759\|Eukaryota,3A9F4@33154\|Opisthokonta
Description	Calcineurin-like phosphoesterase superfamily domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6705	Ggra6705	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 248557..249453 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6705.t1.start1	Ggra6705.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 248557..248559 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6705.t1.CDS1	Ggra6705.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 248557..249453 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6705.t1.exon1	Ggra6705.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 248557..249453 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6705.t1.stop1	Ggra6705.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 249451..249453 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6705.t1	Ggra6705.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 248557..249453 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:248557..249453+
coding sequence from alignment at tig00000056_pilon:248557..249453+

mRNA sequence

>Ggra6705.t1 ID=Ggra6705.t1|Name=Ggra6705.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=299bp
MSPGVPPFMSLSSAHSRAAARNLRLLVMSDLGATPQRIAELSQWLSEHKF
SFTIDAVLVVGVSRTPPAHEYPHQLYAEQGNDSATIAELEQICPRVVYVP
GLHETSASWDTKAGPPLLSSSSVNAILGPVFLTEDLIVVHRRYADGLTEK
PVLQLPSSWKETLYAKLRRPRRFRQPPRNSAIVLSSSELPNNSTGLSLMR
TVRSLLHLKRSAPDYDLILVVAPPKMQRVPSASNVFKSADRVLDPGRFVD
GYFCIIDLQRPDIWDPTKEPEVDGEQLDSETAWDIHGVSKYNLDGVPD*

spliced messenger RNA

>Ggra6705.t1 ID=Ggra6705.t1|Name=Ggra6705.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000056_pilon:248557..249453+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCGGTGTACCGCCTTTCATGTCACTCTCATCCGCCCATTCGCG
AGCCGCCGCTAGAAACCTTCGTTTGCTCGTTATGTCTGATCTAGGCGCTA
CACCTCAACGAATCGCAGAACTGTCACAATGGCTTTCAGAACACAAGTTT
TCTTTTACTATTGACGCCGTTTTGGTAGTCGGGGTATCAAGAACACCTCC
GGCTCATGAATACCCCCATCAACTATATGCGGAGCAAGGGAACGATTCAG
CCACGATAGCCGAGCTGGAACAAATCTGCCCTAGAGTCGTCTATGTACCC
GGCTTGCATGAAACTTCTGCTAGTTGGGATACCAAAGCCGGCCCGCCTCT
TTTATCGTCATCGAGCGTTAATGCAATATTAGGACCTGTATTCCTTACAG
AAGACCTTATCGTTGTTCATCGCCGTTATGCCGATGGGCTAACAGAGAAA
CCAGTTCTCCAACTACCGTCATCTTGGAAGGAAACCCTCTACGCCAAACT
GAGACGTCCCCGTCGATTTCGCCAACCACCACGCAACTCTGCCATTGTTT
TGAGCAGTAGTGAACTTCCAAATAATTCCACAGGCCTGTCGTTAATGCGT
ACCGTACGGTCCTTACTGCATTTGAAGCGAAGTGCTCCGGATTATGACCT
CATTCTTGTCGTTGCTCCTCCCAAAATGCAACGGGTACCATCAGCATCGA
ATGTGTTCAAGTCCGCCGACCGCGTTCTAGATCCAGGTCGTTTTGTTGAT
GGGTATTTTTGTATCATTGATTTGCAAAGACCAGATATCTGGGACCCGAC
AAAAGAACCAGAAGTGGATGGTGAGCAACTGGATTCGGAAACTGCTTGGG
ATATCCATGGGGTTTCCAAATACAATTTGGATGGAGTCCCAGATTAA

protein sequence of Ggra6705.t1

>Ggra6705.t1 ID=Ggra6705.t1|Name=Ggra6705.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=299bp
MSPGVPPFMSLSSAHSRAAARNLRLLVMSDLGATPQRIAELSQWLSEHKF
SFTIDAVLVVGVSRTPPAHEYPHQLYAEQGNDSATIAELEQICPRVVYVP
GLHETSASWDTKAGPPLLSSSSVNAILGPVFLTEDLIVVHRRYADGLTEK
PVLQLPSSWKETLYAKLRRPRRFRQPPRNSAIVLSSSELPNNSTGLSLMR
TVRSLLHLKRSAPDYDLILVVAPPKMQRVPSASNVFKSADRVLDPGRFVD
GYFCIIDLQRPDIWDPTKEPEVDGEQLDSETAWDIHGVSKYNLDGVPD*

mRNA from alignment at tig00000056_pilon:248557..249453+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6705.t1 ID=Ggra6705.t1|Name=Ggra6705.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000056_pilon:248557..249453+ (Gracilaria gracilis GNS1m male)
ATGTCGCCCGGTGTACCGCCTTTCATGTCACTCTCATCCGCCCATTCGCG
AGCCGCCGCTAGAAACCTTCGTTTGCTCGTTATGTCTGATCTAGGCGCTA
CACCTCAACGAATCGCAGAACTGTCACAATGGCTTTCAGAACACAAGTTT
TCTTTTACTATTGACGCCGTTTTGGTAGTCGGGGTATCAAGAACACCTCC
GGCTCATGAATACCCCCATCAACTATATGCGGAGCAAGGGAACGATTCAG
CCACGATAGCCGAGCTGGAACAAATCTGCCCTAGAGTCGTCTATGTACCC
GGCTTGCATGAAACTTCTGCTAGTTGGGATACCAAAGCCGGCCCGCCTCT
TTTATCGTCATCGAGCGTTAATGCAATATTAGGACCTGTATTCCTTACAG
AAGACCTTATCGTTGTTCATCGCCGTTATGCCGATGGGCTAACAGAGAAA
CCAGTTCTCCAACTACCGTCATCTTGGAAGGAAACCCTCTACGCCAAACT
GAGACGTCCCCGTCGATTTCGCCAACCACCACGCAACTCTGCCATTGTTT
TGAGCAGTAGTGAACTTCCAAATAATTCCACAGGCCTGTCGTTAATGCGT
ACCGTACGGTCCTTACTGCATTTGAAGCGAAGTGCTCCGGATTATGACCT
CATTCTTGTCGTTGCTCCTCCCAAAATGCAACGGGTACCATCAGCATCGA
ATGTGTTCAAGTCCGCCGACCGCGTTCTAGATCCAGGTCGTTTTGTTGAT
GGGTATTTTTGTATCATTGATTTGCAAAGACCAGATATCTGGGACCCGAC
AAAAGAACCAGAAGTGGATGGTGAGCAACTGGATTCGGAAACTGCTTGGG
ATATCCATGGGGTTTCCAAATACAATTTGGATGGAGTCCCAGATTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:248557..249453+

>Ggra6705.t1 ID=Ggra6705.t1|Name=Ggra6705.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00000056_pilon:248557..249453+ (Gracilaria gracilis GNS1m male)
ATGTCGCCCGGTGTACCGCCTTTCATGTCACTCTCATCCGCCCATTCGCG
AGCCGCCGCTAGAAACCTTCGTTTGCTCGTTATGTCTGATCTAGGCGCTA
CACCTCAACGAATCGCAGAACTGTCACAATGGCTTTCAGAACACAAGTTT
TCTTTTACTATTGACGCCGTTTTGGTAGTCGGGGTATCAAGAACACCTCC
GGCTCATGAATACCCCCATCAACTATATGCGGAGCAAGGGAACGATTCAG
CCACGATAGCCGAGCTGGAACAAATCTGCCCTAGAGTCGTCTATGTACCC
GGCTTGCATGAAACTTCTGCTAGTTGGGATACCAAAGCCGGCCCGCCTCT
TTTATCGTCATCGAGCGTTAATGCAATATTAGGACCTGTATTCCTTACAG
AAGACCTTATCGTTGTTCATCGCCGTTATGCCGATGGGCTAACAGAGAAA
CCAGTTCTCCAACTACCGTCATCTTGGAAGGAAACCCTCTACGCCAAACT
GAGACGTCCCCGTCGATTTCGCCAACCACCACGCAACTCTGCCATTGTTT
TGAGCAGTAGTGAACTTCCAAATAATTCCACAGGCCTGTCGTTAATGCGT
ACCGTACGGTCCTTACTGCATTTGAAGCGAAGTGCTCCGGATTATGACCT
CATTCTTGTCGTTGCTCCTCCCAAAATGCAACGGGTACCATCAGCATCGA
ATGTGTTCAAGTCCGCCGACCGCGTTCTAGATCCAGGTCGTTTTGTTGAT
GGGTATTTTTGTATCATTGATTTGCAAAGACCAGATATCTGGGACCCGAC
AAAAGAACCAGAAGTGGATGGTGAGCAACTGGATTCGGAAACTGCTTGGG
ATATCCATGGGGTTTCCAAATACAATTTGGATGGAGTCCCAGATTAA