Ggra6872.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6872.t1
Unique NameGgra6872.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:729956..731071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8010.XP_010869983.1
Preferred nameZBTB7A
PFAMsBTB,zf-C2H2
Max annot lvl33208|Metazoa
KEGG koko:K10494
GOsGO:0000122,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0001501,GO:0002682,GO:0002761,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035035,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0045595,GO:0045637,GO:0045670,GO:0045892,GO:0045934,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051216,GO:0051239,GO:0051252,GO:0051253,GO:0060255,GO:0061448,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902105,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Evalue7.16e-05
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38E4H@33154|Opisthokonta,3B9ZS@33208|Metazoa,3CYIE@33213|Bilateria,4862P@7711|Chordata,497GX@7742|Vertebrata,49XKC@7898|Actinopterygii
DescriptionZinc finger and BTB
COG categoryK
BRITEko00000,ko03000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6872Ggra6872Gracilaria gracilis GNS1m malegenetig00000056_pilon 729956..731071 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6872.t1.start1Ggra6872.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 729956..729958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6872.t1.CDS1Ggra6872.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 729956..731071 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6872.t1.exon1Ggra6872.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 729956..731071 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6872.t1.stop1Ggra6872.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 731069..731071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6872.t1Ggra6872.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 729956..731071 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6872.t1 ID=Ggra6872.t1|Name=Ggra6872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MALSDLYTKDQYYEPNHDEFRRHTFGTLYHSRIARDLSDVSLLTSDGKKR
PAFRALLAGCSKYFYKLFVSNPGATEKQEVSVDVTDTVLLEVLTFAYAGH
CNLLTAILSHTTQFSARELNELMQLRKAAKDYGMHPLYEWCDSTLHRLYR
ESPRFACNILQSMIDHGEHNDDSRKHVISFIVKNHMQSFHVCENHSEPSC
RREKDFVGCRSRTHFHRCSYWGIHALEPRTLDDVFENFDMNLIRRARATL
PGTTESLFTAILFWMTDGCLLPCDLRTVPLQTTSSKLDNVKDTCYCRTDE
GSLTALDSFADAYAIDFEVPDEKKIFFVDENRFAWGKKLAARLDINRVSS
EYKHEVLFATGLVDKCQRSNY*
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spliced messenger RNA

>Ggra6872.t1 ID=Ggra6872.t1|Name=Ggra6872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000056_pilon:729956..731071+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTTCCGATTTGTACACGAAAGACCAGTATTATGAACCAAATCA
CGATGAGTTTCGACGCCATACATTTGGAACTCTTTACCATTCTCGAATCG
CCCGAGATCTCTCTGACGTTTCGCTGCTAACGAGTGACGGTAAAAAACGT
CCTGCATTTCGAGCGCTTCTGGCTGGCTGCAGCAAGTACTTCTACAAGCT
TTTCGTTTCTAACCCCGGAGCTACAGAGAAGCAAGAAGTATCAGTCGATG
TGACCGATACTGTTCTATTGGAAGTTCTGACTTTCGCCTATGCTGGTCAT
TGTAACCTTTTAACGGCCATACTGTCGCATACAACTCAATTTTCGGCACG
GGAACTCAACGAGTTGATGCAGCTAAGGAAGGCCGCTAAAGACTACGGTA
TGCACCCATTGTATGAGTGGTGTGATTCTACGCTTCATCGTCTGTACCGC
GAATCTCCGAGATTTGCCTGCAATATCCTTCAATCGATGATCGATCATGG
AGAGCACAACGATGACTCCAGAAAGCATGTCATAAGCTTTATTGTGAAAA
ACCATATGCAATCCTTTCACGTATGCGAGAATCACTCCGAACCCAGTTGC
CGTCGCGAGAAAGATTTTGTTGGATGCCGATCTCGTACGCATTTTCACAG
GTGCTCTTACTGGGGCATTCATGCATTGGAGCCAAGAACGCTGGATGATG
TATTTGAAAATTTTGATATGAACCTCATACGTAGGGCACGTGCTACTTTA
CCTGGGACTACTGAATCCTTGTTTACCGCGATACTGTTCTGGATGACTGA
TGGATGTTTGCTTCCGTGCGACTTGCGTACGGTTCCTTTGCAAACAACTT
CTTCAAAGTTGGACAATGTCAAAGATACGTGTTACTGTCGTACAGATGAA
GGTTCTCTGACCGCTCTGGACAGTTTCGCAGACGCGTATGCGATCGATTT
CGAAGTGCCCGACGAAAAGAAGATTTTTTTCGTCGATGAAAATCGTTTTG
CTTGGGGGAAAAAACTTGCAGCCCGGTTGGATATCAATAGGGTGAGCAGC
GAATACAAGCACGAGGTACTCTTTGCAACGGGTTTGGTTGATAAATGCCA
GCGCTCCAACTATTGA
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protein sequence of Ggra6872.t1

>Ggra6872.t1 ID=Ggra6872.t1|Name=Ggra6872.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MALSDLYTKDQYYEPNHDEFRRHTFGTLYHSRIARDLSDVSLLTSDGKKR
PAFRALLAGCSKYFYKLFVSNPGATEKQEVSVDVTDTVLLEVLTFAYAGH
CNLLTAILSHTTQFSARELNELMQLRKAAKDYGMHPLYEWCDSTLHRLYR
ESPRFACNILQSMIDHGEHNDDSRKHVISFIVKNHMQSFHVCENHSEPSC
RREKDFVGCRSRTHFHRCSYWGIHALEPRTLDDVFENFDMNLIRRARATL
PGTTESLFTAILFWMTDGCLLPCDLRTVPLQTTSSKLDNVKDTCYCRTDE
GSLTALDSFADAYAIDFEVPDEKKIFFVDENRFAWGKKLAARLDINRVSS
EYKHEVLFATGLVDKCQRSNY*
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mRNA from alignment at tig00000056_pilon:729956..731071+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6872.t1 ID=Ggra6872.t1|Name=Ggra6872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000056_pilon:729956..731071+ (Gracilaria gracilis GNS1m male)
ATGGCTCTTTCCGATTTGTACACGAAAGACCAGTATTATGAACCAAATCA
CGATGAGTTTCGACGCCATACATTTGGAACTCTTTACCATTCTCGAATCG
CCCGAGATCTCTCTGACGTTTCGCTGCTAACGAGTGACGGTAAAAAACGT
CCTGCATTTCGAGCGCTTCTGGCTGGCTGCAGCAAGTACTTCTACAAGCT
TTTCGTTTCTAACCCCGGAGCTACAGAGAAGCAAGAAGTATCAGTCGATG
TGACCGATACTGTTCTATTGGAAGTTCTGACTTTCGCCTATGCTGGTCAT
TGTAACCTTTTAACGGCCATACTGTCGCATACAACTCAATTTTCGGCACG
GGAACTCAACGAGTTGATGCAGCTAAGGAAGGCCGCTAAAGACTACGGTA
TGCACCCATTGTATGAGTGGTGTGATTCTACGCTTCATCGTCTGTACCGC
GAATCTCCGAGATTTGCCTGCAATATCCTTCAATCGATGATCGATCATGG
AGAGCACAACGATGACTCCAGAAAGCATGTCATAAGCTTTATTGTGAAAA
ACCATATGCAATCCTTTCACGTATGCGAGAATCACTCCGAACCCAGTTGC
CGTCGCGAGAAAGATTTTGTTGGATGCCGATCTCGTACGCATTTTCACAG
GTGCTCTTACTGGGGCATTCATGCATTGGAGCCAAGAACGCTGGATGATG
TATTTGAAAATTTTGATATGAACCTCATACGTAGGGCACGTGCTACTTTA
CCTGGGACTACTGAATCCTTGTTTACCGCGATACTGTTCTGGATGACTGA
TGGATGTTTGCTTCCGTGCGACTTGCGTACGGTTCCTTTGCAAACAACTT
CTTCAAAGTTGGACAATGTCAAAGATACGTGTTACTGTCGTACAGATGAA
GGTTCTCTGACCGCTCTGGACAGTTTCGCAGACGCGTATGCGATCGATTT
CGAAGTGCCCGACGAAAAGAAGATTTTTTTCGTCGATGAAAATCGTTTTG
CTTGGGGGAAAAAACTTGCAGCCCGGTTGGATATCAATAGGGTGAGCAGC
GAATACAAGCACGAGGTACTCTTTGCAACGGGTTTGGTTGATAAATGCCA
GCGCTCCAACTATTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:729956..731071+

>Ggra6872.t1 ID=Ggra6872.t1|Name=Ggra6872.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000056_pilon:729956..731071+ (Gracilaria gracilis GNS1m male)
ATGGCTCTTTCCGATTTGTACACGAAAGACCAGTATTATGAACCAAATCA
CGATGAGTTTCGACGCCATACATTTGGAACTCTTTACCATTCTCGAATCG
CCCGAGATCTCTCTGACGTTTCGCTGCTAACGAGTGACGGTAAAAAACGT
CCTGCATTTCGAGCGCTTCTGGCTGGCTGCAGCAAGTACTTCTACAAGCT
TTTCGTTTCTAACCCCGGAGCTACAGAGAAGCAAGAAGTATCAGTCGATG
TGACCGATACTGTTCTATTGGAAGTTCTGACTTTCGCCTATGCTGGTCAT
TGTAACCTTTTAACGGCCATACTGTCGCATACAACTCAATTTTCGGCACG
GGAACTCAACGAGTTGATGCAGCTAAGGAAGGCCGCTAAAGACTACGGTA
TGCACCCATTGTATGAGTGGTGTGATTCTACGCTTCATCGTCTGTACCGC
GAATCTCCGAGATTTGCCTGCAATATCCTTCAATCGATGATCGATCATGG
AGAGCACAACGATGACTCCAGAAAGCATGTCATAAGCTTTATTGTGAAAA
ACCATATGCAATCCTTTCACGTATGCGAGAATCACTCCGAACCCAGTTGC
CGTCGCGAGAAAGATTTTGTTGGATGCCGATCTCGTACGCATTTTCACAG
GTGCTCTTACTGGGGCATTCATGCATTGGAGCCAAGAACGCTGGATGATG
TATTTGAAAATTTTGATATGAACCTCATACGTAGGGCACGTGCTACTTTA
CCTGGGACTACTGAATCCTTGTTTACCGCGATACTGTTCTGGATGACTGA
TGGATGTTTGCTTCCGTGCGACTTGCGTACGGTTCCTTTGCAAACAACTT
CTTCAAAGTTGGACAATGTCAAAGATACGTGTTACTGTCGTACAGATGAA
GGTTCTCTGACCGCTCTGGACAGTTTCGCAGACGCGTATGCGATCGATTT
CGAAGTGCCCGACGAAAAGAAGATTTTTTTCGTCGATGAAAATCGTTTTG
CTTGGGGGAAAAAACTTGCAGCCCGGTTGGATATCAATAGGGTGAGCAGC
GAATACAAGCACGAGGTACTCTTTGCAACGGGTTTGGTTGATAAATGCCA
GCGCTCCAACTATTGA
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