Ggra6876.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6876.t1
Unique NameGgra6876.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:801616..802395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD12826
Max annot lvl2903.EOD12826|-
Evalue6.31e-06
EggNOG OGs2F143@1|root,2T264@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6876Ggra6876Gracilaria gracilis GNS1m malegenetig00000056_pilon 801616..802395 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6876.t1.start1Ggra6876.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 801616..801618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6876.t1.CDS1Ggra6876.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 801616..802395 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6876.t1.exon1Ggra6876.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 801616..802395 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6876.t1.stop1Ggra6876.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 802393..802395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6876.t1Ggra6876.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 801616..802395 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6876.t1 ID=Ggra6876.t1|Name=Ggra6876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=260bp
MKVSPATALRRQNIELPVATCFTALPFRGHLVYDGIIYGAQGAKLSAAKK
KTLLERCRAAKAVGNVITGFHVKAPPKKASVPAVDVNNMGTKQLKEFVLQ
RGGSISDCVEKSDLVSRALSVSDKPAQAEGSQKQLNKEQKAQVERLKKLD
KMEEMVVFRRWGYTEESNSAHMVTILHGASFIGMFRSENLVPSATEIVDE
LLKVMEKRGKIFSMVAVDDKETADAVNLVTKEAGIHTGFYPPPSAEEQTF
STMMGHMVK*
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spliced messenger RNA

>Ggra6876.t1 ID=Ggra6876.t1|Name=Ggra6876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000056_pilon:801616..802395+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTATCGCCGGCTACTGCTCTACGTCGGCAAAACATTGAGCTTCC
GGTCGCTACTTGTTTCACTGCACTGCCGTTTCGTGGGCATCTTGTGTATG
ATGGCATCATTTACGGCGCTCAGGGTGCAAAGCTCAGCGCTGCGAAGAAG
AAGACATTGCTTGAGCGATGCCGTGCTGCCAAGGCTGTGGGCAATGTCAT
CACTGGGTTTCATGTCAAAGCTCCACCGAAAAAGGCTTCTGTTCCAGCGG
TTGATGTGAACAATATGGGTACGAAGCAACTCAAGGAATTTGTGCTCCAA
AGAGGTGGTTCTATATCCGATTGCGTCGAGAAGTCTGAtttagtgtcgcg
agctctgtcggtgtctgacaaacctgcacaggcggaggggagccagaagC
AGCTCAACAAAGAACAAAAGGCTCAAGTGGAACGTTTGAAGAAGCTTGAC
AAAATGGAAGAGATGGTCGTTTTCAGGCGCTGGGGATACACAGAGGAGAG
CAATAGCGCACATATGGTCACCATCTTGCATGGCGCTTCGTTTATTGGCA
TGTTCCGCTCGGAGAACTTGGTTCCAAGTGCAACGGAGATTGTGGATGAA
TTGCTAAAGGTGATGGAAAAAAGGGGCAAGATTTTCTCTATGGTTGCAGT
TGACGATAAAGAGACTGCCGATGCTGTGAACCTGGTGACGAAAGAGGCTG
GAATACACACTGGCTTCTATCCACCACCTAGTGCAGAGGAGCAGACATTT
AGCACAATGATGGGGCATATGGTGAAATGA
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protein sequence of Ggra6876.t1

>Ggra6876.t1 ID=Ggra6876.t1|Name=Ggra6876.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MKVSPATALRRQNIELPVATCFTALPFRGHLVYDGIIYGAQGAKLSAAKK
KTLLERCRAAKAVGNVITGFHVKAPPKKASVPAVDVNNMGTKQLKEFVLQ
RGGSISDCVEKSDLVSRALSVSDKPAQAEGSQKQLNKEQKAQVERLKKLD
KMEEMVVFRRWGYTEESNSAHMVTILHGASFIGMFRSENLVPSATEIVDE
LLKVMEKRGKIFSMVAVDDKETADAVNLVTKEAGIHTGFYPPPSAEEQTF
STMMGHMVK*
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mRNA from alignment at tig00000056_pilon:801616..802395+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6876.t1 ID=Ggra6876.t1|Name=Ggra6876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000056_pilon:801616..802395+ (Gracilaria gracilis GNS1m male)
ATGAAGGTATCGCCGGCTACTGCTCTACGTCGGCAAAACATTGAGCTTCC
GGTCGCTACTTGTTTCACTGCACTGCCGTTTCGTGGGCATCTTGTGTATG
ATGGCATCATTTACGGCGCTCAGGGTGCAAAGCTCAGCGCTGCGAAGAAG
AAGACATTGCTTGAGCGATGCCGTGCTGCCAAGGCTGTGGGCAATGTCAT
CACTGGGTTTCATGTCAAAGCTCCACCGAAAAAGGCTTCTGTTCCAGCGG
TTGATGTGAACAATATGGGTACGAAGCAACTCAAGGAATTTGTGCTCCAA
AGAGGTGGTTCTATATCCGATTGCGTCGAGAAGTCTGAtttagtgtcgcg
agctctgtcggtgtctgacaaacctgcacaggcggaggggagccagaagC
AGCTCAACAAAGAACAAAAGGCTCAAGTGGAACGTTTGAAGAAGCTTGAC
AAAATGGAAGAGATGGTCGTTTTCAGGCGCTGGGGATACACAGAGGAGAG
CAATAGCGCACATATGGTCACCATCTTGCATGGCGCTTCGTTTATTGGCA
TGTTCCGCTCGGAGAACTTGGTTCCAAGTGCAACGGAGATTGTGGATGAA
TTGCTAAAGGTGATGGAAAAAAGGGGCAAGATTTTCTCTATGGTTGCAGT
TGACGATAAAGAGACTGCCGATGCTGTGAACCTGGTGACGAAAGAGGCTG
GAATACACACTGGCTTCTATCCACCACCTAGTGCAGAGGAGCAGACATTT
AGCACAATGATGGGGCATATGGTGAAATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:801616..802395+

>Ggra6876.t1 ID=Ggra6876.t1|Name=Ggra6876.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00000056_pilon:801616..802395+ (Gracilaria gracilis GNS1m male)
ATGAAGGTATCGCCGGCTACTGCTCTACGTCGGCAAAACATTGAGCTTCC
GGTCGCTACTTGTTTCACTGCACTGCCGTTTCGTGGGCATCTTGTGTATG
ATGGCATCATTTACGGCGCTCAGGGTGCAAAGCTCAGCGCTGCGAAGAAG
AAGACATTGCTTGAGCGATGCCGTGCTGCCAAGGCTGTGGGCAATGTCAT
CACTGGGTTTCATGTCAAAGCTCCACCGAAAAAGGCTTCTGTTCCAGCGG
TTGATGTGAACAATATGGGTACGAAGCAACTCAAGGAATTTGTGCTCCAA
AGAGGTGGTTCTATATCCGATTGCGTCGAGAAGTCTGAtttagtgtcgcg
agctctgtcggtgtctgacaaacctgcacaggcggaggggagccagaagC
AGCTCAACAAAGAACAAAAGGCTCAAGTGGAACGTTTGAAGAAGCTTGAC
AAAATGGAAGAGATGGTCGTTTTCAGGCGCTGGGGATACACAGAGGAGAG
CAATAGCGCACATATGGTCACCATCTTGCATGGCGCTTCGTTTATTGGCA
TGTTCCGCTCGGAGAACTTGGTTCCAAGTGCAACGGAGATTGTGGATGAA
TTGCTAAAGGTGATGGAAAAAAGGGGCAAGATTTTCTCTATGGTTGCAGT
TGACGATAAAGAGACTGCCGATGCTGTGAACCTGGTGACGAAAGAGGCTG
GAATACACACTGGCTTCTATCCACCACCTAGTGCAGAGGAGCAGACATTT
AGCACAATGATGGGGCATATGGTGAAATGA
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