Ggra6703.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6703.t1
Unique NameGgra6703.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:242265..243281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010530629.1
PFAMsFer4_13,Lactamase_B
Max annot lvl35493|Streptophyta
Evalue2.96e-81
EggNOG OGsCOG0491@1|root,2QPS3@2759|Eukaryota,37IYY@33090|Viridiplantae,3GGDX@35493|Streptophyta,3HZJ4@3699|Brassicales
Description4Fe-4S single cluster domain of Ferredoxin I
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6703Ggra6703Gracilaria gracilis GNS1m malegenetig00000056_pilon 242265..243281 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6703.t1.stop1Ggra6703.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 242265..242267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6703.t1.CDS1Ggra6703.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 242265..243281 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6703.t1.exon1Ggra6703.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 242265..243281 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6703.t1.start1Ggra6703.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 243279..243281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6703.t1Ggra6703.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 242265..243281 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6703.t1 ID=Ggra6703.t1|Name=Ggra6703.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MNEPTFITSLPLRGTPSTPKLTVSPRPPVCVAYRSRRAENVEGNIFVDSS
CIDCDICRWVAPATFGRANLKSAVHSQPRNNQEKRRALQAMVSCPTGSIR
TETPEPLTKDISKSFPTPATDKNGDEVPGVYFNGYASEFTFGASSWLLMT
SDTAVIFDCPRFSEKLAKCIEKVVGDRNLYLALSHSDDVHGHAQWATRLR
CPRIIHAAECNRSQMTHQCEVKLQDADFPYSISDEITLLHTPGHSKGSIC
MYHSQTKSLFSGDHVAFSSKVGRLVAFKPYNSFSWNAQIQSIASLADVDF
KYIWPGHGRKIEFEDGNERRSELRALMQRMQASTESYV*
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spliced messenger RNA

>Ggra6703.t1 ID=Ggra6703.t1|Name=Ggra6703.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000056_pilon:242265..243281- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAACCGACATTTATTACATCACTGCCTCTGAGAGGTACGCCAAG
CACACCGAAGCTCACAGTGTCCCCAAGACCTCCGGTATGCGTCGCATATC
GTTCTCGCCGGGCGGAGAATGTTGAGGGAAATATATTTGTTGACTCAAGC
TGCATTGATTGTGATATCTGCCGATGGGTTGCGCCGGCCACCTTTGGCCG
TGCCAATCTGAAGTCTGCGGTGCATAGTCAACCTCGGAACAACCAGGAAA
AACGTCGAGCGCTTCAGGCCATGGTCTCTTGTCCTACTGGCAGCATCCGA
ACAGAAACACCAGAACCGCTCACAAAGGATATATCCAAGTCGTTTCCGAC
CCCAGCAACGGACAAGAACGGAGATGAAGTACCGGGTGTATACTTCAATG
GTTATGCTTCCGAGTTCACTTTCGGCGCTTCTAGCTGGTTATTAATGACA
TCAGACACTGCTGTTATCTTTGACTGCCCACGGTTCTCAGAGAAGTTGGC
GAAGTGTATTGAAAAGGTTGTCGGCGATCGTAATTTGTATCTCGCCCTGT
CACATAGCGACGATGTTCACGGACATGCTCAGTGGGCGACCCGTTTAAGA
TGCCCACGAATTATTCATGCTGCAGAGTGCAATCGATCCCAGATGACACA
TCAATGTGAAGTCAAATTACAAGACGCCGACTTTCCGTATTCAATTTCAG
ATGAAATCACCCTGTTGCACACCCCAGGTCACTCGAAGGGATCCATTTGC
ATGTACCACTCACAGACAAAAAGTTTGTTCTCAGGGGATCATGTGGCCTT
CTCGAGTAAGGTTGGAAGGCTGGTGGCTTTCAAACCGTACAACTCCTTCA
GTTGGAATGCTCAGATTCAAAGCATCGCCTCCCTGGCTGATGTTGACTTT
AAGTACATCTGGCCTGGGCACGGCCGAAAAATAGAGTTCGAAGATGGGAA
TGAACGTCGTTCGGAGCTCCGAGCTTTGATGCAGCGAATGCAAGCCTCTA
CAGAGAGCTATGTTTGA
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protein sequence of Ggra6703.t1

>Ggra6703.t1 ID=Ggra6703.t1|Name=Ggra6703.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MNEPTFITSLPLRGTPSTPKLTVSPRPPVCVAYRSRRAENVEGNIFVDSS
CIDCDICRWVAPATFGRANLKSAVHSQPRNNQEKRRALQAMVSCPTGSIR
TETPEPLTKDISKSFPTPATDKNGDEVPGVYFNGYASEFTFGASSWLLMT
SDTAVIFDCPRFSEKLAKCIEKVVGDRNLYLALSHSDDVHGHAQWATRLR
CPRIIHAAECNRSQMTHQCEVKLQDADFPYSISDEITLLHTPGHSKGSIC
MYHSQTKSLFSGDHVAFSSKVGRLVAFKPYNSFSWNAQIQSIASLADVDF
KYIWPGHGRKIEFEDGNERRSELRALMQRMQASTESYV*
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mRNA from alignment at tig00000056_pilon:242265..243281-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6703.t1 ID=Ggra6703.t1|Name=Ggra6703.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000056_pilon:242265..243281- (Gracilaria gracilis GNS1m male)
ATGAACGAACCGACATTTATTACATCACTGCCTCTGAGAGGTACGCCAAG
CACACCGAAGCTCACAGTGTCCCCAAGACCTCCGGTATGCGTCGCATATC
GTTCTCGCCGGGCGGAGAATGTTGAGGGAAATATATTTGTTGACTCAAGC
TGCATTGATTGTGATATCTGCCGATGGGTTGCGCCGGCCACCTTTGGCCG
TGCCAATCTGAAGTCTGCGGTGCATAGTCAACCTCGGAACAACCAGGAAA
AACGTCGAGCGCTTCAGGCCATGGTCTCTTGTCCTACTGGCAGCATCCGA
ACAGAAACACCAGAACCGCTCACAAAGGATATATCCAAGTCGTTTCCGAC
CCCAGCAACGGACAAGAACGGAGATGAAGTACCGGGTGTATACTTCAATG
GTTATGCTTCCGAGTTCACTTTCGGCGCTTCTAGCTGGTTATTAATGACA
TCAGACACTGCTGTTATCTTTGACTGCCCACGGTTCTCAGAGAAGTTGGC
GAAGTGTATTGAAAAGGTTGTCGGCGATCGTAATTTGTATCTCGCCCTGT
CACATAGCGACGATGTTCACGGACATGCTCAGTGGGCGACCCGTTTAAGA
TGCCCACGAATTATTCATGCTGCAGAGTGCAATCGATCCCAGATGACACA
TCAATGTGAAGTCAAATTACAAGACGCCGACTTTCCGTATTCAATTTCAG
ATGAAATCACCCTGTTGCACACCCCAGGTCACTCGAAGGGATCCATTTGC
ATGTACCACTCACAGACAAAAAGTTTGTTCTCAGGGGATCATGTGGCCTT
CTCGAGTAAGGTTGGAAGGCTGGTGGCTTTCAAACCGTACAACTCCTTCA
GTTGGAATGCTCAGATTCAAAGCATCGCCTCCCTGGCTGATGTTGACTTT
AAGTACATCTGGCCTGGGCACGGCCGAAAAATAGAGTTCGAAGATGGGAA
TGAACGTCGTTCGGAGCTCCGAGCTTTGATGCAGCGAATGCAAGCCTCTA
CAGAGAGCTATGTTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:242265..243281-

>Ggra6703.t1 ID=Ggra6703.t1|Name=Ggra6703.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000056_pilon:242265..243281- (Gracilaria gracilis GNS1m male)
ATGAACGAACCGACATTTATTACATCACTGCCTCTGAGAGGTACGCCAAG
CACACCGAAGCTCACAGTGTCCCCAAGACCTCCGGTATGCGTCGCATATC
GTTCTCGCCGGGCGGAGAATGTTGAGGGAAATATATTTGTTGACTCAAGC
TGCATTGATTGTGATATCTGCCGATGGGTTGCGCCGGCCACCTTTGGCCG
TGCCAATCTGAAGTCTGCGGTGCATAGTCAACCTCGGAACAACCAGGAAA
AACGTCGAGCGCTTCAGGCCATGGTCTCTTGTCCTACTGGCAGCATCCGA
ACAGAAACACCAGAACCGCTCACAAAGGATATATCCAAGTCGTTTCCGAC
CCCAGCAACGGACAAGAACGGAGATGAAGTACCGGGTGTATACTTCAATG
GTTATGCTTCCGAGTTCACTTTCGGCGCTTCTAGCTGGTTATTAATGACA
TCAGACACTGCTGTTATCTTTGACTGCCCACGGTTCTCAGAGAAGTTGGC
GAAGTGTATTGAAAAGGTTGTCGGCGATCGTAATTTGTATCTCGCCCTGT
CACATAGCGACGATGTTCACGGACATGCTCAGTGGGCGACCCGTTTAAGA
TGCCCACGAATTATTCATGCTGCAGAGTGCAATCGATCCCAGATGACACA
TCAATGTGAAGTCAAATTACAAGACGCCGACTTTCCGTATTCAATTTCAG
ATGAAATCACCCTGTTGCACACCCCAGGTCACTCGAAGGGATCCATTTGC
ATGTACCACTCACAGACAAAAAGTTTGTTCTCAGGGGATCATGTGGCCTT
CTCGAGTAAGGTTGGAAGGCTGGTGGCTTTCAAACCGTACAACTCCTTCA
GTTGGAATGCTCAGATTCAAAGCATCGCCTCCCTGGCTGATGTTGACTTT
AAGTACATCTGGCCTGGGCACGGCCGAAAAATAGAGTTCGAAGATGGGAA
TGAACGTCGTTCGGAGCTCCGAGCTTTGATGCAGCGAATGCAAGCCTCTA
CAGAGAGCTATGTTTGA
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