Ggra6797.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6797.t1
Unique NameGgra6797.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:539629..540540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04409T0
Preferred nameTIP41
PFAMsTIP41
Max annot lvl4751|Fungi
KEGG koko:K17607
KEGG Pathwayko04138,map04138
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0007154,GO:0007165,GO:0008150,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0010921,GO:0010922,GO:0019220,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032516,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043666,GO:0044093,GO:0044424,GO:0044464,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0080090
Evalue3.29e-40
EggNOG OGsKOG3224@1|root,KOG3224@2759|Eukaryota,38FP2@33154|Opisthokonta,3NXDN@4751|Fungi,1GTH3@112252|Fungi incertae sedis
DescriptionTIP41-like family
COG categoryS
BRITEko00000,ko00001,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6797Ggra6797Gracilaria gracilis GNS1m malegenetig00000056_pilon 539629..540540 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6797.t1.start1Ggra6797.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 539629..539631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6797.t1.CDS1Ggra6797.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 539629..540540 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6797.t1.exon1Ggra6797.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 539629..540540 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6797.t1.stop1Ggra6797.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 540538..540540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6797.t1Ggra6797.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 539629..540540 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6797.t1 ID=Ggra6797.t1|Name=Ggra6797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MGATTEAPTSPDRAPPSAAAPFSLHEDGNGIDIKQWSIQAVERPIASSAV
EQQMSNLLGIKLPGMLFDSNSLRLCFAPKRLNVSTDAQHSFELSFTTLEA
LKMVGDADPSVRVRAAACWEGKNRRDDVQVTKIEHASDWTFSTKYKGTMN
PSLSVTSIETTSAAAECQVQELATSNSLVPVDYNALRNTQLPILYSSHII
LFEDELDDNGTASYKVRIRVMPDFFFILARFFLRVDGVLLRVYDTRYYHQ
FGSGVLVRETSTKEARLDSSWAGVHPSVLRDPDLASQRLPKISSTLENLL
LVS*
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spliced messenger RNA

>Ggra6797.t1 ID=Ggra6797.t1|Name=Ggra6797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000056_pilon:539629..540540+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCACAACCGAAGCCCCAACGAGCCCGGATCGGGCTCCGCCTTC
TGCTGCTGCTCCATTTTCTCTCCACGAGGATGGAAACGGTATAGATATCA
AGCAATGGTCCATTCAAGCAGTGGAGCGCCCTATTGCCTCAAGCGCTGTG
GAACAGCAAATGTCAAATCTACTTGGAATCAAGCTCCCGGGCATGCTGTT
TGATTCAAACAGCCTTCGTCTTTGTTTCGCTCCAAAACGCCTCAATGTAT
CCACCGATGCGCAGCATTCGTTCGAGCTGTCCTTCACAACACTTGAAGCA
TTAAAAATGGTTGGCGACGCAGATCCCTCTGTTAGGGTTCGTGCTGCTGC
GTGTTGGGAAGGAAAGAATCGTCGTGACGATGTACAAGTAACTAAAATCG
AACATGCCAGTGACTGGACGTTTTCCACTAAGTACAAGGGTACAATGAAC
CCATCTCTATCCGTCACTTCAATTGAGACAACATCTGCAGCGGCAGAATG
TCAGGTTCAAGAACTTGCCACTTCAAACTCGCTTGTTCCCGTTGACTATA
ATGCATTGAGAAACACTCAGCTTCCGATACTTTATTCATCGCATATTATT
CTCTTTGAAGACGAGTTGGACGATAATGGAACCGCTTCATACAAGGTCCG
CATCAGGGTAATGCCTGATTTCTTCTTCATTCTCGCACGATTTTTCCTGC
GCGTGGATGGTGTGCTTCTACGCGTGTACGATACTCGTTATTACCACCAG
TTTGGTAGTGGTGTATTAGTGCGCGAGACGTCGACAAAGGAAGCAAGACT
CGATTCTTCGTGGGCAGGCGTTCATCCGTCAGTTCTGCGAGACCCGGACC
TTGCCTCTCAAAGACTGCCAAAGATATCGTCAACATTAGAAAATCTACTA
CTCGTTTCGTGA
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protein sequence of Ggra6797.t1

>Ggra6797.t1 ID=Ggra6797.t1|Name=Ggra6797.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MGATTEAPTSPDRAPPSAAAPFSLHEDGNGIDIKQWSIQAVERPIASSAV
EQQMSNLLGIKLPGMLFDSNSLRLCFAPKRLNVSTDAQHSFELSFTTLEA
LKMVGDADPSVRVRAAACWEGKNRRDDVQVTKIEHASDWTFSTKYKGTMN
PSLSVTSIETTSAAAECQVQELATSNSLVPVDYNALRNTQLPILYSSHII
LFEDELDDNGTASYKVRIRVMPDFFFILARFFLRVDGVLLRVYDTRYYHQ
FGSGVLVRETSTKEARLDSSWAGVHPSVLRDPDLASQRLPKISSTLENLL
LVS*
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mRNA from alignment at tig00000056_pilon:539629..540540+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6797.t1 ID=Ggra6797.t1|Name=Ggra6797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000056_pilon:539629..540540+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCACAACCGAAGCCCCAACGAGCCCGGATCGGGCTCCGCCTTC
TGCTGCTGCTCCATTTTCTCTCCACGAGGATGGAAACGGTATAGATATCA
AGCAATGGTCCATTCAAGCAGTGGAGCGCCCTATTGCCTCAAGCGCTGTG
GAACAGCAAATGTCAAATCTACTTGGAATCAAGCTCCCGGGCATGCTGTT
TGATTCAAACAGCCTTCGTCTTTGTTTCGCTCCAAAACGCCTCAATGTAT
CCACCGATGCGCAGCATTCGTTCGAGCTGTCCTTCACAACACTTGAAGCA
TTAAAAATGGTTGGCGACGCAGATCCCTCTGTTAGGGTTCGTGCTGCTGC
GTGTTGGGAAGGAAAGAATCGTCGTGACGATGTACAAGTAACTAAAATCG
AACATGCCAGTGACTGGACGTTTTCCACTAAGTACAAGGGTACAATGAAC
CCATCTCTATCCGTCACTTCAATTGAGACAACATCTGCAGCGGCAGAATG
TCAGGTTCAAGAACTTGCCACTTCAAACTCGCTTGTTCCCGTTGACTATA
ATGCATTGAGAAACACTCAGCTTCCGATACTTTATTCATCGCATATTATT
CTCTTTGAAGACGAGTTGGACGATAATGGAACCGCTTCATACAAGGTCCG
CATCAGGGTAATGCCTGATTTCTTCTTCATTCTCGCACGATTTTTCCTGC
GCGTGGATGGTGTGCTTCTACGCGTGTACGATACTCGTTATTACCACCAG
TTTGGTAGTGGTGTATTAGTGCGCGAGACGTCGACAAAGGAAGCAAGACT
CGATTCTTCGTGGGCAGGCGTTCATCCGTCAGTTCTGCGAGACCCGGACC
TTGCCTCTCAAAGACTGCCAAAGATATCGTCAACATTAGAAAATCTACTA
CTCGTTTCGTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:539629..540540+

>Ggra6797.t1 ID=Ggra6797.t1|Name=Ggra6797.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000056_pilon:539629..540540+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCACAACCGAAGCCCCAACGAGCCCGGATCGGGCTCCGCCTTC
TGCTGCTGCTCCATTTTCTCTCCACGAGGATGGAAACGGTATAGATATCA
AGCAATGGTCCATTCAAGCAGTGGAGCGCCCTATTGCCTCAAGCGCTGTG
GAACAGCAAATGTCAAATCTACTTGGAATCAAGCTCCCGGGCATGCTGTT
TGATTCAAACAGCCTTCGTCTTTGTTTCGCTCCAAAACGCCTCAATGTAT
CCACCGATGCGCAGCATTCGTTCGAGCTGTCCTTCACAACACTTGAAGCA
TTAAAAATGGTTGGCGACGCAGATCCCTCTGTTAGGGTTCGTGCTGCTGC
GTGTTGGGAAGGAAAGAATCGTCGTGACGATGTACAAGTAACTAAAATCG
AACATGCCAGTGACTGGACGTTTTCCACTAAGTACAAGGGTACAATGAAC
CCATCTCTATCCGTCACTTCAATTGAGACAACATCTGCAGCGGCAGAATG
TCAGGTTCAAGAACTTGCCACTTCAAACTCGCTTGTTCCCGTTGACTATA
ATGCATTGAGAAACACTCAGCTTCCGATACTTTATTCATCGCATATTATT
CTCTTTGAAGACGAGTTGGACGATAATGGAACCGCTTCATACAAGGTCCG
CATCAGGGTAATGCCTGATTTCTTCTTCATTCTCGCACGATTTTTCCTGC
GCGTGGATGGTGTGCTTCTACGCGTGTACGATACTCGTTATTACCACCAG
TTTGGTAGTGGTGTATTAGTGCGCGAGACGTCGACAAAGGAAGCAAGACT
CGATTCTTCGTGGGCAGGCGTTCATCCGTCAGTTCTGCGAGACCCGGACC
TTGCCTCTCAAAGACTGCCAAAGATATCGTCAACATTAGAAAATCTACTA
CTCGTTTCGTGA
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