Ggra6783.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6783.t1
Unique Name	Ggra6783.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	473

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:499027..500445 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6783	Ggra6783	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 499027..500445 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6783.t1.start1	Ggra6783.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 499027..499029 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6783.t1.CDS1	Ggra6783.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 499027..500445 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6783.t1.exon1	Ggra6783.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 499027..500445 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6783.t1.stop1	Ggra6783.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 500443..500445 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6783.t1	Ggra6783.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 499027..500445 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:499027..500445+
coding sequence from alignment at tig00000056_pilon:499027..500445+

mRNA sequence

>Ggra6783.t1 ID=Ggra6783.t1|Name=Ggra6783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=473bp
MCTQKESSIIDANPREAPSPSPFIPKVTPIPDEAATGESFLLPEPSEMPK
IEYSSTVLEESMEPMSSLESEGYETDIPFPDSSFYPPAEETNESESFVID
NLQRLSDPFQNFERKQRSDPSVKQADILDKLTMRTVLDNILRRKKQEPFY
DEDKVDKGKYDSESNDVLSDYHEEKSKKTTIHAYPKIIRVGEPSVVKMSL
RIQEEDQIDGLECFRAHHLDSTTQNRTGLYVELADDGTAIYSDDTQQDGV
FAGILAITSEALNERIGFEVVPVIDGIENKSHPLSFKAEHLISSYGTRNP
NADAIGGGLLKSPRISIVENLRDLQLKVHFIQFGDAVLMSSARFLHDVVG
ADCDEMGNSNELMEFKDEETVQTVVVDLDRAAEKGLLQDSSSIQLRAAYK
EIGNKTPILIMSVLENKATKTELIHTRLSVPVNVGVENECPEAVVGTISV
FVGEKTAIVLKGDSMQKLVSAE*

spliced messenger RNA

>Ggra6783.t1 ID=Ggra6783.t1|Name=Ggra6783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000056_pilon:499027..500445+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTACTCAAAAAGAGTCCTCTATAATCGACGCCAATCCTCGTGAAGC
TCCGTCTCCATCCCCATTCATTCCGAAAGTGACTCCAATACCTGATGAAG
CGGCAACTGGAGAATCCTTTTTGTTGCCGGAGCCGAGCGAGATGCCCAAG
ATTGAGTACTCCTCAACTGTTTTAGAGGAATCGATGGAACCAATGAGTTC
TTTAGAGTCCGAGGGTTATGAAACTGATATTCCATTTCCTGATTCCTCAT
TCTATCCACCAGCAGAAGAGACAAATGAAAGCGAATCGTTTGTTATCGAC
AATCTACAACGTCTCTCTGATCCTTTTCAAAACTTTGAAAGAAAACAGAG
GTCAGACCCATCCGTGAAACAGGCCGATATACTTGACAAGCTAACAATGC
GTACCGTACTTGACAACATTCTTAGAAGAAAGAAGCAAGAGCCTTTCTAT
GATGAAGACAAAGTTGACAAGGGAAAATATGATTCAGAATCTAACGACGT
GCTGTCCGATTATCATGAAGAGAAGAGCAAGAAAACCACAATTCATGCAT
ATCCAAAAATCATTAGAGTGGGAGAACCGAGCGTTGTAAAAATGTCTCTA
CGTATCCAAGAAGAAGATCAAATTGACGGCTTGGAGTGTTTTAGGGCTCA
TCACTTAGACTCAACTACACAGAACAGGACTGGGTTGTATGTCGAGCTTG
CGGATGATGGAACAGCTATTTACTCCGATGATACTCAGCAAGATGGTGTA
TTCGCTGGTATCTTAGCAATCACGAGCGAGGCGTTAAACGAACGAATCGG
TTTTGAGGTTGTACCCGTCATTGATGGAATCGAAAACAAATCACATCCTC
TTTCTTTCAAAGCAGAGCACTTAATCTCGTCTTACGGAACCCGAAACCCA
AATGCAGATGCAATTGGAGGAGGATTGCTGAAGAGCCCTCGCATATCCAT
TGTTGAAAACTTGAGAGACCTTCAGCTGAAGGTTCATTTCATACAGTTTG
GAGATGCAGTGCTCATGAGCAGTGCCAGGTTTCTGCACGATGTGGTCGGA
GCTGATTGTGATGAAATGGGAAACTCTAACGAACTAATGGAATTCAAAGA
CGAAGAAACTGTTCAGACTGTGGTGGTCGATCTGGATAGGGCTGCGGAAA
AGGGGTTGCTTCAAGATTCATCTTCAATACAACTTCGAGCAGCCTACAAA
GAAATAGGGAACAAGACTCCCATTCTTATCATGTCCGTTCTAGAAAACAA
GGCAACCAAAACTGAACTCATCCACACCCGCCTCTCAGTGCCCGTCAATG
TGGGTGTAGAGAATGAGTGCCCGGAAGCTGTTGTTGGAACGATTTCTGTT
TTCGTTGGAGAGAAAACAGCTATCGTTCTAAAAGGGGATTCGATGCAGAA
GCTGGTCTCTGCAGAATAA

protein sequence of Ggra6783.t1

>Ggra6783.t1 ID=Ggra6783.t1|Name=Ggra6783.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=473bp
MCTQKESSIIDANPREAPSPSPFIPKVTPIPDEAATGESFLLPEPSEMPK
IEYSSTVLEESMEPMSSLESEGYETDIPFPDSSFYPPAEETNESESFVID
NLQRLSDPFQNFERKQRSDPSVKQADILDKLTMRTVLDNILRRKKQEPFY
DEDKVDKGKYDSESNDVLSDYHEEKSKKTTIHAYPKIIRVGEPSVVKMSL
RIQEEDQIDGLECFRAHHLDSTTQNRTGLYVELADDGTAIYSDDTQQDGV
FAGILAITSEALNERIGFEVVPVIDGIENKSHPLSFKAEHLISSYGTRNP
NADAIGGGLLKSPRISIVENLRDLQLKVHFIQFGDAVLMSSARFLHDVVG
ADCDEMGNSNELMEFKDEETVQTVVVDLDRAAEKGLLQDSSSIQLRAAYK
EIGNKTPILIMSVLENKATKTELIHTRLSVPVNVGVENECPEAVVGTISV
FVGEKTAIVLKGDSMQKLVSAE*

mRNA from alignment at tig00000056_pilon:499027..500445+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6783.t1 ID=Ggra6783.t1|Name=Ggra6783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000056_pilon:499027..500445+ (Gracilaria gracilis GNS1m male)
ATGTGTACTCAAAAAGAGTCCTCTATAATCGACGCCAATCCTCGTGAAGC
TCCGTCTCCATCCCCATTCATTCCGAAAGTGACTCCAATACCTGATGAAG
CGGCAACTGGAGAATCCTTTTTGTTGCCGGAGCCGAGCGAGATGCCCAAG
ATTGAGTACTCCTCAACTGTTTTAGAGGAATCGATGGAACCAATGAGTTC
TTTAGAGTCCGAGGGTTATGAAACTGATATTCCATTTCCTGATTCCTCAT
TCTATCCACCAGCAGAAGAGACAAATGAAAGCGAATCGTTTGTTATCGAC
AATCTACAACGTCTCTCTGATCCTTTTCAAAACTTTGAAAGAAAACAGAG
GTCAGACCCATCCGTGAAACAGGCCGATATACTTGACAAGCTAACAATGC
GTACCGTACTTGACAACATTCTTAGAAGAAAGAAGCAAGAGCCTTTCTAT
GATGAAGACAAAGTTGACAAGGGAAAATATGATTCAGAATCTAACGACGT
GCTGTCCGATTATCATGAAGAGAAGAGCAAGAAAACCACAATTCATGCAT
ATCCAAAAATCATTAGAGTGGGAGAACCGAGCGTTGTAAAAATGTCTCTA
CGTATCCAAGAAGAAGATCAAATTGACGGCTTGGAGTGTTTTAGGGCTCA
TCACTTAGACTCAACTACACAGAACAGGACTGGGTTGTATGTCGAGCTTG
CGGATGATGGAACAGCTATTTACTCCGATGATACTCAGCAAGATGGTGTA
TTCGCTGGTATCTTAGCAATCACGAGCGAGGCGTTAAACGAACGAATCGG
TTTTGAGGTTGTACCCGTCATTGATGGAATCGAAAACAAATCACATCCTC
TTTCTTTCAAAGCAGAGCACTTAATCTCGTCTTACGGAACCCGAAACCCA
AATGCAGATGCAATTGGAGGAGGATTGCTGAAGAGCCCTCGCATATCCAT
TGTTGAAAACTTGAGAGACCTTCAGCTGAAGGTTCATTTCATACAGTTTG
GAGATGCAGTGCTCATGAGCAGTGCCAGGTTTCTGCACGATGTGGTCGGA
GCTGATTGTGATGAAATGGGAAACTCTAACGAACTAATGGAATTCAAAGA
CGAAGAAACTGTTCAGACTGTGGTGGTCGATCTGGATAGGGCTGCGGAAA
AGGGGTTGCTTCAAGATTCATCTTCAATACAACTTCGAGCAGCCTACAAA
GAAATAGGGAACAAGACTCCCATTCTTATCATGTCCGTTCTAGAAAACAA
GGCAACCAAAACTGAACTCATCCACACCCGCCTCTCAGTGCCCGTCAATG
TGGGTGTAGAGAATGAGTGCCCGGAAGCTGTTGTTGGAACGATTTCTGTT
TTCGTTGGAGAGAAAACAGCTATCGTTCTAAAAGGGGATTCGATGCAGAA
GCTGGTCTCTGCAGAATAA

Coding sequence (CDS) from alignment at tig00000056_pilon:499027..500445+

>Ggra6783.t1 ID=Ggra6783.t1|Name=Ggra6783.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1419bp|location=Sequence derived from alignment at tig00000056_pilon:499027..500445+ (Gracilaria gracilis GNS1m male)
ATGTGTACTCAAAAAGAGTCCTCTATAATCGACGCCAATCCTCGTGAAGC
TCCGTCTCCATCCCCATTCATTCCGAAAGTGACTCCAATACCTGATGAAG
CGGCAACTGGAGAATCCTTTTTGTTGCCGGAGCCGAGCGAGATGCCCAAG
ATTGAGTACTCCTCAACTGTTTTAGAGGAATCGATGGAACCAATGAGTTC
TTTAGAGTCCGAGGGTTATGAAACTGATATTCCATTTCCTGATTCCTCAT
TCTATCCACCAGCAGAAGAGACAAATGAAAGCGAATCGTTTGTTATCGAC
AATCTACAACGTCTCTCTGATCCTTTTCAAAACTTTGAAAGAAAACAGAG
GTCAGACCCATCCGTGAAACAGGCCGATATACTTGACAAGCTAACAATGC
GTACCGTACTTGACAACATTCTTAGAAGAAAGAAGCAAGAGCCTTTCTAT
GATGAAGACAAAGTTGACAAGGGAAAATATGATTCAGAATCTAACGACGT
GCTGTCCGATTATCATGAAGAGAAGAGCAAGAAAACCACAATTCATGCAT
ATCCAAAAATCATTAGAGTGGGAGAACCGAGCGTTGTAAAAATGTCTCTA
CGTATCCAAGAAGAAGATCAAATTGACGGCTTGGAGTGTTTTAGGGCTCA
TCACTTAGACTCAACTACACAGAACAGGACTGGGTTGTATGTCGAGCTTG
CGGATGATGGAACAGCTATTTACTCCGATGATACTCAGCAAGATGGTGTA
TTCGCTGGTATCTTAGCAATCACGAGCGAGGCGTTAAACGAACGAATCGG
TTTTGAGGTTGTACCCGTCATTGATGGAATCGAAAACAAATCACATCCTC
TTTCTTTCAAAGCAGAGCACTTAATCTCGTCTTACGGAACCCGAAACCCA
AATGCAGATGCAATTGGAGGAGGATTGCTGAAGAGCCCTCGCATATCCAT
TGTTGAAAACTTGAGAGACCTTCAGCTGAAGGTTCATTTCATACAGTTTG
GAGATGCAGTGCTCATGAGCAGTGCCAGGTTTCTGCACGATGTGGTCGGA
GCTGATTGTGATGAAATGGGAAACTCTAACGAACTAATGGAATTCAAAGA
CGAAGAAACTGTTCAGACTGTGGTGGTCGATCTGGATAGGGCTGCGGAAA
AGGGGTTGCTTCAAGATTCATCTTCAATACAACTTCGAGCAGCCTACAAA
GAAATAGGGAACAAGACTCCCATTCTTATCATGTCCGTTCTAGAAAACAA
GGCAACCAAAACTGAACTCATCCACACCCGCCTCTCAGTGCCCGTCAATG
TGGGTGTAGAGAATGAGTGCCCGGAAGCTGTTGTTGGAACGATTTCTGTT
TTCGTTGGAGAGAAAACAGCTATCGTTCTAAAAGGGGATTCGATGCAGAA
GCTGGTCTCTGCAGAATAA