Ggra6819.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6819.t1
Unique NameGgra6819.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length556
Homology
BLAST of Ggra6819.t1 vs. uniprot
Match: A0A2V3IPV6 (Transcription termination factor MTERF5, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV6_9FLOR)

HSP 1 Score: 255 bits (651), Expect = 6.790e-75
Identity = 194/456 (42.54%), Postives = 279/456 (61.18%), Query Frame = 0
Query:   50 SFSKAFIGNPLVRT--ATCPTLRLSS-------VQACARFMRSSEHQNQVLDIETRLRSLGARYAADQAQSAFCEQDANIPETWAELLSVLYDHECTNVTLSRIASKLGIISLLRVSPASASKLFHLFDKSLMLSIRQQMRILSTKPDILEMDVSLISATLQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSFPDYKVRSFLYRSPWIFTVDIDTRMAPTVDWLSEFIG---QTSDLAKLVLSAPAVLGTRRASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLRYTLRIGXXXXXXXXXXXXXXXXXXXXXXXXXVVDFFIRRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQKLGLSMDEVLKFPACFSYDLTSRIIPRTRFVQKMGCSMLDFNLRLSIAPSDKQFCEFLQVELHHYASFSEA 493
            +F+    G P  RT  + C T  L         +Q  A+ + S+E ++QV +IET+LR+L A  AADQA  A    +  +P TW + L +L D+  T   LSR+AS+LGI+SLL VSPA A  LF L D ++ LS  Q+ R+L+++PD+L  DV+L++++L++L   G+  R +QR+ +I+P +L+ HP+ + RV RFLQ SPL  P + +R  L R+PWI   DID++MAP   WL E++    +  D  + +LSAP VL   R+SL+ VM  L     L +  ++S++ + P ILT S ++ L+P +++    L            XXXXXXXXXXXXXXXX   F + R    XXXXXXXXXXXXXXXXXXXXXX       +LGL++ ++LKFP  FSYDL +RIIPRT+F Q+ G S+    L   ++ SD+ FC+ + +    Y  F E+
Sbjct:    4 AFATILSGIPFARTPRSLCRTPDLPHPLRHKHPLQPRAKLIHSAEKEDQVTNIETQLRALDAPSAADQAYVALSTPNTPVPSTWMDTLLLLKDYGITGELLSRMASRLGILSLLNVSPARAGSLFKLLDTAISLSASQKRRVLTSRPDLLLSDVNLVNSSLESLQEAGLRRRDLQRLVVIWPRMLLLHPAYVNRVTRFLQHSPLWIPKHMLRPLLRRAPWILVFDIDSQMAPVAYWLDEYVFPFLKRPDRTRFILSAPMVLSRSRSSLNEVMEFLWSNTRLTDTQQVSVLRQFPSILTFSVDEVLQPAVDYFVKDLHFSTSEVSRLIHXXXXXXXXXXXXXXXXXXKFLVSRRISNXXXXXXXXXXXXXXXXXXXXXXKMNYLEHELGLTVHDILKFPGYFSYDLEARIIPRTKFAQENGVSISKVGLSRMLSSSDETFCKLVHMTQESYKLFCES 459          
BLAST of Ggra6819.t1 vs. uniprot
Match: A0A6H5KUV8 (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.790e-12
Identity = 89/320 (27.81%), Postives = 142/320 (44.38%), Query Frame = 0
Query:  176 IRQQMRILSTKPDILEMDVSLISATLQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSFPDYKVRSFLYRSPWIFTVDIDTRMAPTVDWLSEFIGQTSDLAKLVLSAPAVLGTR-RASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLRYTLRIGXXXXXXXXXXXXXXXXXXXXXXXXXVVDFFIRRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQKLGLSMDEVLKFPACFSYDLTSRIIPRTRFVQKMGCSMLDFNLRLSIAPSDKQFC-EFLQVELHHYASFSEA 493
            IR+   +L+ +P     D S  +  +  L  LG+  RH++  A+ +P +LV  P S  ++A FL S  +      + S + ++PW+    ID +M P V +L   I   +D+ +++ + P VL    R  L   +R L  +V + EED   ++   P +    P  +++  + F        XXXXXXXXXXXXX            VV +  R G                               +K+GLS+ +VL FPA FSY L + I PRT F+   G  +    L +++   D  F  +  +V+   Y  F +A
Sbjct:  755 IRKAPEVLAPRP-----DGSTAAEAVDVLRTLGLRRRHLKMEAMRWPQLLVVPPGSFFQLAAFLASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLR--IAGVADVERVLRAYPKVLSASIRGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFAL-PLSRMKDVMAFXXXXXXXXXXXXXXXXXXXXXLLGLERERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKA 1066          
BLAST of Ggra6819.t1 vs. uniprot
Match: D7FXW7 (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW7_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.460e-11
Identity = 87/320 (27.19%), Postives = 140/320 (43.75%), Query Frame = 0
Query:  176 IRQQMRILSTKPDILEMDVSLISATLQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSFPDYKVRSFLYRSPWIFTVDIDTRMAPTVDWLSEFIGQTSDLAKLVLSAPAVL-GTRRASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLRYTLRIGXXXXXXXXXXXXXXXXXXXXXXXXXVVDFFIRRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQKLGLSMDEVLKFPACFSYDLTSRIIPRTRFVQKMGCSMLDFNLRLSIAPSDKQFC-EFLQVELHHYASFSEA 493
            IR+   +L+ +P     D S  +  +  L  LG+  RH++  A+ +P +L   P S  ++A FL S  +      + S + ++PW+    ID +M P V +L   I    D+ +++ + P VL  + R  L   +R L  +V + EED   ++   P +    P  +++  + F        XXXXXXXXXXXX             VV +  R G                               +K+GLS+ +VL FPA FSY L + I PRT F+   G  +    L +++   D  F  +  +V+   Y  F +A
Sbjct:  295 IRKAPEVLAPRP-----DGSTAAEAVDVLRTLGLRRRHLKMEAMRWPQLLAVPPGSFFQLAAFLASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLR--IAGVVDVERVLRAYPKVLCASIRGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFAL-PLSRMKDVMAFXXXXXXXXXXXXXXXXXXXXSLLGLERERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKA 606          
BLAST of Ggra6819.t1 vs. uniprot
Match: A0A835Z724 (mTERF-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z724_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.840e-8
Identity = 104/380 (27.37%), Postives = 162/380 (42.63%), Query Frame = 0
Query:  181 RILSTKPDIL--EMDVSLISATLQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSF----PDYKVRSF--LYRSPWIFTVDIDTRMAPTVDWLSEFIGQTSDLAKLVLSAPAVLGTR-RASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLRYTLRIGXXXXXXXXXXXXXXXXXXXXXXXXXVVDFFIRRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQKLGLSMDEVLKFPACFSYDLTSRIIPRTRFVQKMGCSMLDFNLRLSIAPSDKQFCEFL-QVELHHYASFSEACMKEIHDSSLADKAGTGEEHQKRGRCKERMSGFSSLSAEDY-SLRGRHTRSHNRGMT 549
            R+L   P +L    D S    T+ AL  LG+  + V    + +P +L   P+S+  +A +L S+ +       D    S   L ++PW+   D++T++ P   +L E +G   D+ +++ + P +L       L   +  L  EV + EED   ++   P +L   P +++R     L   L I  XXXXXXXXXXX             VV +    G                                 +GLS+ +VL FPA FSY L S I PRT F++     +    L +++   D  F + + +V    YASF  A MK  H + +  +AGT      +G     M G   L  +   SL G  T S+ + +T
Sbjct:   37 RVLRRAPQVLLPRQDGSTPVDTIAALQALGLKPKMVSMEVIRWPRLLTYSPASLMELATWLGSAEVGMRAASDDSSAVSLNVLRQAPWLAEHDLETQLRPVARYLQESLG-IRDMQRVLRAYPQILCCSITKDLEPRVWFLTEEVGINEEDVPRVVQTFP-LLFAVPVERMRGVYGLLASELLITRXXXXXXXXXXXSLLGLEPEKHVRAVVAYMRSLGIQNIGRFVSRLPPVLGYDVSNNLMPKMDYLVAMMGLSVYDVLTFPAYFSYPLESIIEPRTEFLKLRRRPIAVVGLNMALTSGDADFAKKIAKVRPELYASFKAAYMK--HRAEV--QAGT-----MKGEDLLEMLGLDMLGGKPLGSLGGLSTSSNVQEVT 405          
BLAST of Ggra6819.t1 vs. uniprot
Match: A0A7S4UNY4 (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UNY4_GUITH)

HSP 1 Score: 62.0 bits (149), Expect = 1.760e-6
Identity = 101/334 (30.24%), Postives = 146/334 (43.71%), Query Frame = 0
Query:  153 LLRVSPASASKLFHLFDKSLMLSIRQQMRILSTKPDILEMDV---SLISATLQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSFPDYKVRSFL---YRSPWIFTVDIDTRMAPTVDWLSEFIGQTSDLAKLVLSAPAVLGTR--RASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLRYTLRIGXXXXXXXXXXXXXXXXXXXXXXXXXVVDFFIRRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQKLGLSMDEVLKFPACFSYDLTSRIIPRTRFVQKMGCSMLDFNLRLSIAPSDKQFCE 478
            LL V+P     L  L    + LS+++   ILS +P +L  +V       AT+Q L  LG+  +H+Q + + FP +L   P +I  V   L        D + + FL    ++PW+   D    + P V+ L        DL K+V + P VLG +     L S+  L E     +  +   +I  HP IL           L + ++ L I                           VDF    G         XXXXXXXXXXXXXXXXXXXXX     L++ +V +FP  F+Y L   + PR  F++ +   +    L   IAP+D+ FCE
Sbjct:  123 LLAVNPQRIDDLKALLTDRMELSLKEVRYILSRRPSLLSYEVWGERGFEATVQELLKLGIKKKHLQIVLMNFPGVLTVKPKTIMSVVDVLCDEDSGGLDIE-KDFLPLVRKAPWVLLFDPSREIEPVVECLFSL---ELDLRKVVSAYPMVLGLKVDEQILESIAILQEFG--FENYEIAYMIESHPAILGTEIVGGTFKMLQYFQHELEIDQQSLQKMIRAFPPLLHLDMQRHVLPCVDFLGEIGISNVGRILAXXXXXXXXXXXXXXXXXXXXXXXXX-LTVFDVARFPQVFAYPLDRILRPRLLFMRYLEIPVTSKPLEWIIAPTDQSFCE 449          
The following BLAST results are available for this feature:
BLAST of Ggra6819.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IPV66.790e-7542.54Transcription termination factor MTERF5, chloropla... [more]
A0A6H5KUV87.790e-1227.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXW75.460e-1127.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7242.840e-827.37mTERF-domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S4UNY41.760e-630.24Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 324..356
e-value: 6.2E-4
score: 29.1
coord: 288..319
e-value: 640.0
score: 5.4
coord: 252..284
e-value: 25.0
score: 13.8
coord: 180..210
e-value: 950.0
score: 4.1
coord: 428..459
e-value: 5.0E-4
score: 29.4
coord: 395..427
e-value: 0.042
score: 23.0
coord: 361..392
e-value: 1.9E-4
score: 30.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 315..476
e-value: 5.4E-25
score: 88.0
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 250..497
coord: 201..351
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 250..493
e-value: 1.3E-41
score: 144.5
NoneNo IPR availablePANTHERPTHR13068:SF151TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTICcoord: 250..497
coord: 201..351

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:612428..614095 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6819.t1Ggra6819.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 612428..614095 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6819.t1 ID=Ggra6819.t1|Name=Ggra6819.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MTLGRRSKGGNSGYEATLFETTKCKVFEICCSSFSRSAYLAFSSPFPRRS
FSKAFIGNPLVRTATCPTLRLSSVQACARFMRSSEHQNQVLDIETRLRSL
GARYAADQAQSAFCEQDANIPETWAELLSVLYDHECTNVTLSRIASKLGI
ISLLRVSPASASKLFHLFDKSLMLSIRQQMRILSTKPDILEMDVSLISAT
LQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSFPDYK
VRSFLYRSPWIFTVDIDTRMAPTVDWLSEFIGQTSDLAKLVLSAPAVLGT
RRASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLR
YTLRIGRSERRKIVRAFPHILTLDIDQQIMPVVDFFIRRGASDVSRLVRL
FPPILSNDLHTDTIPKVEYFTQKLGLSMDEVLKFPACFSYDLTSRIIPRT
RFVQKMGCSMLDFNLRLSIAPSDKQFCEFLQVELHHYASFSEACMKEIHD
SSLADKAGTGEEHQKRGRCKERMSGFSSLSAEDYSLRGRHTRSHNRGMTP
FSVYP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf