Ggra6819.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6819.t1
Unique Name	Ggra6819.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:612428..614095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FXW7
PFAMs	mTERF
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15032
Evalue	3.01e-12
EggNOG OGs	KOG1267@1\|root,KOG1267@2759\|Eukaryota
Description	termination of mitochondrial transcription
COG category	S
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6819	Ggra6819	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 612428..614095 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6819.t1.start1	Ggra6819.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 612428..612430 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6819.t1.CDS1	Ggra6819.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 612428..614095 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6819.t1.exon1	Ggra6819.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 612428..614095 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6819.t1.stop1	Ggra6819.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 614093..614095 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6819.t1	Ggra6819.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 612428..614095 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:612428..614095+
coding sequence from alignment at tig00000056_pilon:612428..614095+

mRNA sequence

>Ggra6819.t1 ID=Ggra6819.t1|Name=Ggra6819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp
MTLGRRSKGGNSGYEATLFETTKCKVFEICCSSFSRSAYLAFSSPFPRRS
FSKAFIGNPLVRTATCPTLRLSSVQACARFMRSSEHQNQVLDIETRLRSL
GARYAADQAQSAFCEQDANIPETWAELLSVLYDHECTNVTLSRIASKLGI
ISLLRVSPASASKLFHLFDKSLMLSIRQQMRILSTKPDILEMDVSLISAT
LQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSFPDYK
VRSFLYRSPWIFTVDIDTRMAPTVDWLSEFIGQTSDLAKLVLSAPAVLGT
RRASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLR
YTLRIGRSERRKIVRAFPHILTLDIDQQIMPVVDFFIRRGASDVSRLVRL
FPPILSNDLHTDTIPKVEYFTQKLGLSMDEVLKFPACFSYDLTSRIIPRT
RFVQKMGCSMLDFNLRLSIAPSDKQFCEFLQVELHHYASFSEACMKEIHD
SSLADKAGTGEEHQKRGRCKERMSGFSSLSAEDYSLRGRHTRSHNRGMTP
FSVYP*

spliced messenger RNA

>Ggra6819.t1 ID=Ggra6819.t1|Name=Ggra6819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000056_pilon:612428..614095+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTTGGGAGACGATCTAAAGGTGGAAATAGTGGCTATGAGGCGAC
ACTTTTCGAAACCACGAAGTGCAAGGTTTTTGAAATATGTTGCAGCTCCT
TTTCAAGATCCGCTTATCTGGCATTTTCTTCTCCGTTTCCGAGGAGGTCA
TTCTCCAAAGCGTTTATTGGCAACCCACTGGTTCGAACTGCGACATGTCC
CACACTTCGTTTGTCGTCGGTTCAGGCGTGCGCGCGATTTATGAGGAGTT
CCGAGCATCAGAATCAAGTTTTGGATATCGAAACCAGATTACGGTCTCTG
GGCGCCCGTTATGCAGCAGATCAAGCTCAAAGCGCATTTTGTGAGCAAGA
TGCTAACATCCCTGAGACGTGGGCAGAGTTGTTATCCGTTCTATACGACC
ATGAGTGCACCAATGTGACACTATCGCGGATTGCATCGAAGCTTGGAATC
ATATCGCTTCTTAGAGTCTCGCCTGCCTCAGCTTCAAAGCTATTCCACCT
CTTTGACAAGTCTTTAATGCTGAGCATTCGACAACAAATGCGGATCCTCT
CCACCAAGCCGGACATTCTCGAGATGGACGTGAGTCTAATTTCTGCTACA
TTGCAAGCCCTTTTCAATCTTGGGATGCCGCTCAGGCATGTTCAACGTAT
TGCACTGATATTCCCTTACATTCTTGTGCAACACCCCTCCTCAATAGCAC
GTGTAGCAAGATTCTTACAAAGTTCGCCGTTATCCTTTCCAGATTACAAA
GTTCGTTCGTTTCTTTATCGCTCTCCATGGATTTTCACTGTTGATATCGA
CACCCGCATGGCTCCAACGGTTGACTGGCTGTCAGAATTTATCGGGCAGA
CATCTGATCTCGCTAAGCTCGTTCTATCTGCACCAGCCGTTCTCGGAACG
AGACGGGCAAGTCTCCACTCTGTAATGCGACTCTTAGAAGTTGAGGTGCA
CCTGAAAGAGGAAGATCGAATATCTATCATAAACCGACATCCCCGAATTC
TCACTTGCTCTCCTGAGAAGCAGCTGAGACCAACTCTCAATTTCTTACGA
TACACGCTAAGAATCGGACGTTCTGAACGGCGTAAAATTGTGCGAGCGTT
TCCACACATACTAACTCTGGATATAGATCAACAAATAATGCCAGTCGTGG
ACTTTTTCATACGTAGGGGTGCTTCTGATGTCTCTCGGTTGGTCAGACTG
TTTCCGCCAATACTTAGCAACGATCTTCATACCGATACAATTCCCAAGGT
AGAATATTTCACTCAGAAACTTGGACTCTCTATGGATGAAGTTTTGAAGT
TCCCAGCGTGCTTCTCATACGACTTGACATCTCGAATTATACCTAGAACA
CGGTTTGTTCAGAAAATGGGTTGCTCCATGCTGGATTTTAATCTCCGTCT
TAGTATAGCTCCATCAGATAAGCAGTTTTGCGAGTTTCTTCAAGTAGAGC
TCCACCACTATGCATCATTTTCAGAAGCATGTATGAAAGAAATCCATGAT
TCCTCGCTTGCAGATAAGGCTGGGACCGGCGAAGAGCACCAGAAGAGAGG
AAGATGTAAAGAGAGGATGTCAGGATTCTCAAGCCTCTCGGCAGAGGATT
ACAGCCTCCGCGGAAGGCATACAAGATCACACAACCGTGGAATGACTCCT
TTTTCGGTATACCCGTAA

protein sequence of Ggra6819.t1

>Ggra6819.t1 ID=Ggra6819.t1|Name=Ggra6819.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MTLGRRSKGGNSGYEATLFETTKCKVFEICCSSFSRSAYLAFSSPFPRRS
FSKAFIGNPLVRTATCPTLRLSSVQACARFMRSSEHQNQVLDIETRLRSL
GARYAADQAQSAFCEQDANIPETWAELLSVLYDHECTNVTLSRIASKLGI
ISLLRVSPASASKLFHLFDKSLMLSIRQQMRILSTKPDILEMDVSLISAT
LQALFNLGMPLRHVQRIALIFPYILVQHPSSIARVARFLQSSPLSFPDYK
VRSFLYRSPWIFTVDIDTRMAPTVDWLSEFIGQTSDLAKLVLSAPAVLGT
RRASLHSVMRLLEVEVHLKEEDRISIINRHPRILTCSPEKQLRPTLNFLR
YTLRIGRSERRKIVRAFPHILTLDIDQQIMPVVDFFIRRGASDVSRLVRL
FPPILSNDLHTDTIPKVEYFTQKLGLSMDEVLKFPACFSYDLTSRIIPRT
RFVQKMGCSMLDFNLRLSIAPSDKQFCEFLQVELHHYASFSEACMKEIHD
SSLADKAGTGEEHQKRGRCKERMSGFSSLSAEDYSLRGRHTRSHNRGMTP
FSVYP*

mRNA from alignment at tig00000056_pilon:612428..614095+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6819.t1 ID=Ggra6819.t1|Name=Ggra6819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000056_pilon:612428..614095+ (Gracilaria gracilis GNS1m male)
ATGACTCTTGGGAGACGATCTAAAGGTGGAAATAGTGGCTATGAGGCGAC
ACTTTTCGAAACCACGAAGTGCAAGGTTTTTGAAATATGTTGCAGCTCCT
TTTCAAGATCCGCTTATCTGGCATTTTCTTCTCCGTTTCCGAGGAGGTCA
TTCTCCAAAGCGTTTATTGGCAACCCACTGGTTCGAACTGCGACATGTCC
CACACTTCGTTTGTCGTCGGTTCAGGCGTGCGCGCGATTTATGAGGAGTT
CCGAGCATCAGAATCAAGTTTTGGATATCGAAACCAGATTACGGTCTCTG
GGCGCCCGTTATGCAGCAGATCAAGCTCAAAGCGCATTTTGTGAGCAAGA
TGCTAACATCCCTGAGACGTGGGCAGAGTTGTTATCCGTTCTATACGACC
ATGAGTGCACCAATGTGACACTATCGCGGATTGCATCGAAGCTTGGAATC
ATATCGCTTCTTAGAGTCTCGCCTGCCTCAGCTTCAAAGCTATTCCACCT
CTTTGACAAGTCTTTAATGCTGAGCATTCGACAACAAATGCGGATCCTCT
CCACCAAGCCGGACATTCTCGAGATGGACGTGAGTCTAATTTCTGCTACA
TTGCAAGCCCTTTTCAATCTTGGGATGCCGCTCAGGCATGTTCAACGTAT
TGCACTGATATTCCCTTACATTCTTGTGCAACACCCCTCCTCAATAGCAC
GTGTAGCAAGATTCTTACAAAGTTCGCCGTTATCCTTTCCAGATTACAAA
GTTCGTTCGTTTCTTTATCGCTCTCCATGGATTTTCACTGTTGATATCGA
CACCCGCATGGCTCCAACGGTTGACTGGCTGTCAGAATTTATCGGGCAGA
CATCTGATCTCGCTAAGCTCGTTCTATCTGCACCAGCCGTTCTCGGAACG
AGACGGGCAAGTCTCCACTCTGTAATGCGACTCTTAGAAGTTGAGGTGCA
CCTGAAAGAGGAAGATCGAATATCTATCATAAACCGACATCCCCGAATTC
TCACTTGCTCTCCTGAGAAGCAGCTGAGACCAACTCTCAATTTCTTACGA
TACACGCTAAGAATCGGACGTTCTGAACGGCGTAAAATTGTGCGAGCGTT
TCCACACATACTAACTCTGGATATAGATCAACAAATAATGCCAGTCGTGG
ACTTTTTCATACGTAGGGGTGCTTCTGATGTCTCTCGGTTGGTCAGACTG
TTTCCGCCAATACTTAGCAACGATCTTCATACCGATACAATTCCCAAGGT
AGAATATTTCACTCAGAAACTTGGACTCTCTATGGATGAAGTTTTGAAGT
TCCCAGCGTGCTTCTCATACGACTTGACATCTCGAATTATACCTAGAACA
CGGTTTGTTCAGAAAATGGGTTGCTCCATGCTGGATTTTAATCTCCGTCT
TAGTATAGCTCCATCAGATAAGCAGTTTTGCGAGTTTCTTCAAGTAGAGC
TCCACCACTATGCATCATTTTCAGAAGCATGTATGAAAGAAATCCATGAT
TCCTCGCTTGCAGATAAGGCTGGGACCGGCGAAGAGCACCAGAAGAGAGG
AAGATGTAAAGAGAGGATGTCAGGATTCTCAAGCCTCTCGGCAGAGGATT
ACAGCCTCCGCGGAAGGCATACAAGATCACACAACCGTGGAATGACTCCT
TTTTCGGTATACCCGTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:612428..614095+

>Ggra6819.t1 ID=Ggra6819.t1|Name=Ggra6819.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000056_pilon:612428..614095+ (Gracilaria gracilis GNS1m male)
ATGACTCTTGGGAGACGATCTAAAGGTGGAAATAGTGGCTATGAGGCGAC
ACTTTTCGAAACCACGAAGTGCAAGGTTTTTGAAATATGTTGCAGCTCCT
TTTCAAGATCCGCTTATCTGGCATTTTCTTCTCCGTTTCCGAGGAGGTCA
TTCTCCAAAGCGTTTATTGGCAACCCACTGGTTCGAACTGCGACATGTCC
CACACTTCGTTTGTCGTCGGTTCAGGCGTGCGCGCGATTTATGAGGAGTT
CCGAGCATCAGAATCAAGTTTTGGATATCGAAACCAGATTACGGTCTCTG
GGCGCCCGTTATGCAGCAGATCAAGCTCAAAGCGCATTTTGTGAGCAAGA
TGCTAACATCCCTGAGACGTGGGCAGAGTTGTTATCCGTTCTATACGACC
ATGAGTGCACCAATGTGACACTATCGCGGATTGCATCGAAGCTTGGAATC
ATATCGCTTCTTAGAGTCTCGCCTGCCTCAGCTTCAAAGCTATTCCACCT
CTTTGACAAGTCTTTAATGCTGAGCATTCGACAACAAATGCGGATCCTCT
CCACCAAGCCGGACATTCTCGAGATGGACGTGAGTCTAATTTCTGCTACA
TTGCAAGCCCTTTTCAATCTTGGGATGCCGCTCAGGCATGTTCAACGTAT
TGCACTGATATTCCCTTACATTCTTGTGCAACACCCCTCCTCAATAGCAC
GTGTAGCAAGATTCTTACAAAGTTCGCCGTTATCCTTTCCAGATTACAAA
GTTCGTTCGTTTCTTTATCGCTCTCCATGGATTTTCACTGTTGATATCGA
CACCCGCATGGCTCCAACGGTTGACTGGCTGTCAGAATTTATCGGGCAGA
CATCTGATCTCGCTAAGCTCGTTCTATCTGCACCAGCCGTTCTCGGAACG
AGACGGGCAAGTCTCCACTCTGTAATGCGACTCTTAGAAGTTGAGGTGCA
CCTGAAAGAGGAAGATCGAATATCTATCATAAACCGACATCCCCGAATTC
TCACTTGCTCTCCTGAGAAGCAGCTGAGACCAACTCTCAATTTCTTACGA
TACACGCTAAGAATCGGACGTTCTGAACGGCGTAAAATTGTGCGAGCGTT
TCCACACATACTAACTCTGGATATAGATCAACAAATAATGCCAGTCGTGG
ACTTTTTCATACGTAGGGGTGCTTCTGATGTCTCTCGGTTGGTCAGACTG
TTTCCGCCAATACTTAGCAACGATCTTCATACCGATACAATTCCCAAGGT
AGAATATTTCACTCAGAAACTTGGACTCTCTATGGATGAAGTTTTGAAGT
TCCCAGCGTGCTTCTCATACGACTTGACATCTCGAATTATACCTAGAACA
CGGTTTGTTCAGAAAATGGGTTGCTCCATGCTGGATTTTAATCTCCGTCT
TAGTATAGCTCCATCAGATAAGCAGTTTTGCGAGTTTCTTCAAGTAGAGC
TCCACCACTATGCATCATTTTCAGAAGCATGTATGAAAGAAATCCATGAT
TCCTCGCTTGCAGATAAGGCTGGGACCGGCGAAGAGCACCAGAAGAGAGG
AAGATGTAAAGAGAGGATGTCAGGATTCTCAAGCCTCTCGGCAGAGGATT
ACAGCCTCCGCGGAAGGCATACAAGATCACACAACCGTGGAATGACTCCT
TTTTCGGTATACCCGTAA