Ggra6824.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6824.t1
Unique NameGgra6824.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:624239..624790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709156.1
Preferred namePSBP3
PFAMsPsbP
Max annot lvl2759|Eukaryota
KEGG koko:K02717
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Evalue9.68e-48
EggNOG OGsCOG0459@1|root,2QU2U@2759|Eukaryota
Descriptionphotosynthesis
COG categoryO
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6824Ggra6824Gracilaria gracilis GNS1m malegenetig00000056_pilon 624239..624790 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6824.t1.start1Ggra6824.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 624239..624241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6824.t1.CDS1Ggra6824.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 624239..624790 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6824.t1.exon1Ggra6824.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 624239..624790 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6824.t1.stop1Ggra6824.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 624788..624790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6824.t1Ggra6824.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 624239..624790 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6824.t1 ID=Ggra6824.t1|Name=Ggra6824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MTADAGLSARRVSRRAFSAWLSALPLLPLLPANAADISGLVTPYRDLPKG
FTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLG
SAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNK
QKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL*
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spliced messenger RNA

>Ggra6824.t1 ID=Ggra6824.t1|Name=Ggra6824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000056_pilon:624239..624790+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGGACGCTGgcttgtcggcgcgtcgcgtgtctcgtcgcgcgtt
ctctgcgtgGCTTTCCGCGCTGCCGTTGCTGCCGCTGCTGCCCGCGAACG
CGGCCGATATCTCGGGGCTGGTCACGCCGTACAGGGACTTACCGAAGGGC
TTCACAATTCTGCGGCCCAATGGGTGGAACGAGTTCGAGGCGATGCAGGA
TAACTACGACATCAAGTGGCAGGATGTGATCCAGTCGCTGGAGTTTGTCA
CCGTGTTGACGTCGCCGGTGGCTAGCAATAAGACTTTGGGCGATCTTGGT
TCTGCCGAGTCTGTGGGTGACAAGCTTGCACAAGCCAGAGGTGGCAAGCT
GGTTCGCGCCGTGGAGAAGGATATCGAAGGCATTCCCGCGTACTTGTTGG
AGATTAAGCGTGAAAGTGCTCATCAACTAACACTACTCACAGTCAACAAG
CAAAAGTTGTATTCGGTAAACGCCAGTTGTTCGGAAAAGCGCTGGGGCAA
GAGAGAGAAGCTGCTCCGCGGTGTGGTAGATTCGTTCCGACCAAAGCTTT
GA
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protein sequence of Ggra6824.t1

>Ggra6824.t1 ID=Ggra6824.t1|Name=Ggra6824.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MTADAGLSARRVSRRAFSAWLSALPLLPLLPANAADISGLVTPYRDLPKG
FTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLG
SAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNK
QKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL*
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mRNA from alignment at tig00000056_pilon:624239..624790+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6824.t1 ID=Ggra6824.t1|Name=Ggra6824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000056_pilon:624239..624790+ (Gracilaria gracilis GNS1m male)
ATGACGGCGGACGCTGgcttgtcggcgcgtcgcgtgtctcgtcgcgcgtt
ctctgcgtgGCTTTCCGCGCTGCCGTTGCTGCCGCTGCTGCCCGCGAACG
CGGCCGATATCTCGGGGCTGGTCACGCCGTACAGGGACTTACCGAAGGGC
TTCACAATTCTGCGGCCCAATGGGTGGAACGAGTTCGAGGCGATGCAGGA
TAACTACGACATCAAGTGGCAGGATGTGATCCAGTCGCTGGAGTTTGTCA
CCGTGTTGACGTCGCCGGTGGCTAGCAATAAGACTTTGGGCGATCTTGGT
TCTGCCGAGTCTGTGGGTGACAAGCTTGCACAAGCCAGAGGTGGCAAGCT
GGTTCGCGCCGTGGAGAAGGATATCGAAGGCATTCCCGCGTACTTGTTGG
AGATTAAGCGTGAAAGTGCTCATCAACTAACACTACTCACAGTCAACAAG
CAAAAGTTGTATTCGGTAAACGCCAGTTGTTCGGAAAAGCGCTGGGGCAA
GAGAGAGAAGCTGCTCCGCGGTGTGGTAGATTCGTTCCGACCAAAGCTTT
GA
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Coding sequence (CDS) from alignment at tig00000056_pilon:624239..624790+

>Ggra6824.t1 ID=Ggra6824.t1|Name=Ggra6824.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000056_pilon:624239..624790+ (Gracilaria gracilis GNS1m male)
ATGACGGCGGACGCTGgcttgtcggcgcgtcgcgtgtctcgtcgcgcgtt
ctctgcgtgGCTTTCCGCGCTGCCGTTGCTGCCGCTGCTGCCCGCGAACG
CGGCCGATATCTCGGGGCTGGTCACGCCGTACAGGGACTTACCGAAGGGC
TTCACAATTCTGCGGCCCAATGGGTGGAACGAGTTCGAGGCGATGCAGGA
TAACTACGACATCAAGTGGCAGGATGTGATCCAGTCGCTGGAGTTTGTCA
CCGTGTTGACGTCGCCGGTGGCTAGCAATAAGACTTTGGGCGATCTTGGT
TCTGCCGAGTCTGTGGGTGACAAGCTTGCACAAGCCAGAGGTGGCAAGCT
GGTTCGCGCCGTGGAGAAGGATATCGAAGGCATTCCCGCGTACTTGTTGG
AGATTAAGCGTGAAAGTGCTCATCAACTAACACTACTCACAGTCAACAAG
CAAAAGTTGTATTCGGTAAACGCCAGTTGTTCGGAAAAGCGCTGGGGCAA
GAGAGAGAAGCTGCTCCGCGGTGTGGTAGATTCGTTCCGACCAAAGCTTT
GA
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